Contig 003178:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012K08Sequence451010697 (12)emb|CDY35861.1|1e-80BnaC09g37930D [Brassica napus]735003178 (11)ref|XP_008384431.1|3e-118PREDICTED: tubulin alpha-3 chain-like [Malus domestica]
JMFF013K13Sequence720003178 (11)ref|XP_008384431.1|1e-117PREDICTED: tubulin alpha-3 chain-like [Malus domestica]
JMFF024F11Sequence497010697 (12)gb|KJB83376.1|3e-91hypothetical protein B456_013G244600 [Gossypium raimondii]738003178 (11)ref|XP_008384431.1|3e-118PREDICTED: tubulin alpha-3 chain-like [Malus domestica]
JMFF025F17Sequence282003178 (11)257003178 (11)
JMFF027B08Sequence525010697 (12)gb|KJB83376.1|1e-91hypothetical protein B456_013G244600 [Gossypium raimondii]722003178 (11)ref|XP_008384431.1|2e-117PREDICTED: tubulin alpha-3 chain-like [Malus domestica]
JMFF039G11Sequence583010697 (12)gb|KJB83376.1|8e-102hypothetical protein B456_013G244600 [Gossypium raimondii]719003178 (11)ref|XP_008384431.1|1e-116PREDICTED: tubulin alpha-3 chain-like [Malus domestica]
JMFF050H07Sequence630010697 (12)gb|KJB83376.1|6e-113hypothetical protein B456_013G244600 [Gossypium raimondii]520003178 (11)ref|XP_008384431.1|5e-59PREDICTED: tubulin alpha-3 chain-like [Malus domestica]
JMSF005E13Sequence411010697 (12)emb|CDY35861.1|7e-74BnaC09g37930D [Brassica napus]483003178 (11)ref|XP_008384431.1|2e-62PREDICTED: tubulin alpha-3 chain-like [Malus domestica]
JMSF022O19Sequence631010697 (12)gb|KJB83376.1|1e-102hypothetical protein B456_013G244600 [Gossypium raimondii]759003178 (11)ref|XP_008384431.1|1e-135PREDICTED: tubulin alpha-3 chain-like [Malus domestica]
JMSF042F06Sequence741010697 (12)gb|KJB83376.1|8e-131hypothetical protein B456_013G244600 [Gossypium raimondii]791003178 (11)ref|XP_008384431.1|9e-126PREDICTED: tubulin alpha-3 chain-like [Malus domestica]

Alignment

This contig is upended


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rJMSF022O19+                      TCTTTGAGGTTTGATGGAGCCATTAATGTTGACATCACCGAG-NTCCA
rJMSF042F06+           CTTTGACAACTTCTTTGAGGTTTGATGGAGCCATTAATGTTGACATCACCGAGTTTCCA
                      ____________________________________________________________
consensus              CTTTGACAACTTCTTTGAGGTTTGATGGAGCCATTAATGTTGACATCACCGAGTTTCCA
 
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rJMSF022O19+          AACTAACCTTGTACCTTATCCACGTATCCATTTCATGCTTTCTTCTTATGCTCCTGTTAT
rJMSF042F06+          AACTAACCTTGTACCTTATCCACGTATCCATTTCATGCTTTCTTCTTATGCTCCTGTTAT
rJMFF027B08+                                 GTATCCATTTCATGCTTTCTTCTTATGCTCCTGTTAT
rJMFF039G11+                                   ATCCATTTCATGCNTTCTTCTTATGCTCCTGTTAT
rJMFF013K13+                                  TATCCATTTCATGCTTTCTTCTTATGCTCCTGTTAT
rJMFF012K08+                                CGTATCCATTTCATGCTTTCTTCTTATGCTCCTGTTAT
rJMFF024F11+                                CGTATCCATTTCATGCTTTCTTCTTATGCTCCTGTTAT
                      ____________________________________________________________
consensus             AACTAACCTTGTACCTTATCCACGTATCCATTTCATGCTTTCTTCTTATGCTCCTGTTAT
 
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rJMSF022O19+          CTCGTCTGCCAAGGCTTATCACGAACAGTTGTCTGTTCCTGAGATTACGAATGCTGTTTT
rJMSF042F06+          CTCGTCTGCCAAGGCTTATCACGAACAGTTGTCTGTTCCTGAGGTTACGAATGCTGTTTT
rJMFF027B08+          CTCGTCTGCCAAGGCTTATCACGAACAGTTGTCTGTTCCTGAGATTACGAATGCTGTTTT
rJMFF039G11+          CTCGTCTGCCAAGGCTTATCACGAACAGTTGTCTGTTCCTGAGATTACGAATGCTGTTTT
rJMFF013K13+          CTCGTCTGCCAAGGCTTATCACGAACAGTTGTCTGTTCCTGAGATTACGAATGCTGTTTT
rJMFF012K08+          CTCGTCTGCCAAGGCTTATCACGAACAGTTGTCTGTTCCTGAGATTACGAATGCTGTTTT
rJMFF024F11+          CTCGTCTGCCAAGGCTTATCACGAACAGTTGTCTGTTCCTGAGATTACGAATGCTGTTTT
                      ____________________________________________________________
consensus             CTCGTCTGCCAAGGCTTATCACGAACAGTTGTCTGTTCCTGAGATTACGAATGCTGTTTT
 
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rJMSF022O19+          TGAACCGTCAAGCATGATGGCAAAGTGTGATCCAAGACATGGTAAATACATGGCATGTTG
rJMSF042F06+          TGAACCGTCAAGCATGATGGCAAAGTGTGATCCAAGACATGGTAAATACATGGCATGTTG
rJMFF027B08+          TGAACCGTCAAGCATGATGGCAAAGTGTGATCCAAGACATGGTAAATACATGGCATGTTG
rJMFF039G11+          TGAACCGTCAAGCATGATGGCAAAGTGTGATCCAAGACATGGTAAATACATGGCATGTTG
rJMFF013K13+          TGAACCGTCAAGCATGATGGCAAAGTGTGATCCAAGACATGGTAAATACATGGCATGTTG
rJMFF012K08+          TGAACCGTCAAGCATGATGGCAAAGTGTGATCCAAGACATGGTAAATACATGGCATGTTG
rJMFF024F11+          TGAACCGTCAAGCATGATGGCAAAGTGTGATCCAAGACATGGTAAATACATGGCATGTTG
                      ____________________________________________________________
consensus             TGAACCGTCAAGCATGATGGCAAAGTGTGATCCAAGACATGGTAAATACATGGCATGTTG
 
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rJMSF022O19+          TTTGATGTACCGTGGAGATGTTGTCCCAAAGGATGTCAATTCTGCTGTTGCTACCATTAA
rJMSF042F06+          TTTGATGTACCGTGGAGATGTTGTCCCAAAGGATGTCAATTCTGCTGTTGCTACCATTAA
rJMFF027B08+          TTTGATGTACCGTGGAGATGTTGTCCCAAAGGATGTCAATTCTGCTGTTGCTACCATTAA
rJMFF039G11+          TTTGATGTACCGTGGAGATGTTGTCCCAAAGGATGTCAATTCTGCTGTTGCTACCATTAA
rJMFF013K13+          TTTGATGTACCGTGGAGATGTTGTCCCAAAGGATGTCAATTCTGCTGTTGCTACCATTAA
rJMSF005E13+                                                                   TAA
rJMFF012K08+          TTTGATGTACCGTGGAGATGTTGTCCCAAAGGATGTCAATTCTGCTGTTGCTACCATTAA
rJMFF024F11+          TTTGATGTACCGTGGAGATGTTGTCCCAAAGGATGTCAATTCTGCTGTTGCTACCATTAA
                      ____________________________________________________________
consensus             TTTGATGTACCGTGGAGATGTTGTCCCAAAGGATGTCAATTCTGCTGTTGCTACCATTAA
 
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rJMSF022O19+          GACAAAGAGGACTGTTCAGTTTGTTGATTGGTGCCCTACGGGTTTCAAGTGTGGCATCAA
rJMSF042F06+          GACAAAGAGGACTGTTCAGTTTGTTGATTGGTGCCCTACGGGTTTCAAGTGTGGCATCAA
rJMFF027B08+          GACAAAGAGGACTGTTCAGTTTGTTGATTGGTGCCCTACGGGTTTCAAGTGTGGCATCAA
rJMFF039G11+          GACAAAGAGGACTGTTCAGTTTGTTGATTGGTGCCCTACGGGTTTCAAGTGTGGCATCAA
rJMFF013K13+          GACAAAGAGGACTGTTCAGTTTGTTGATTGGTGCCCTACGGGTTTCAAGTGTGGCATCAA
rJMSF005E13+          GACAAAGAGGACTGTTCAGTTTGTTGATTGGTGCCCTACGGGTTTCAAGTGTGGCATCAA
rJMFF012K08+          GACAAAGAGGACTGTTCAGTTTGTTGATTGGTGCCCTACGGGTTTCAAGTGTGGCATCAA
rJMFF024F11+          GACAAAGAGGACTGTTCAGTTTGTTGATTGGTGCCCTACGGGTTTCAAGTGTGGCATCAA
rJMFF050H07+                    ACTGTTCAGTTTGTTGATTGGTGCCCTACGGGTTTCAAGTGTGGCATCAA
                      ____________________________________________________________
consensus             GACAAAGAGGACTGTTCAGTTTGTTGATTGGTGCCCTACGGGTTTCAAGTGTGGCATCAA
 
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rJMSF022O19+          CTATCAGCCCCCGACAGTGGTTCCTGGAGGTGACCTTGCCCGTGTGCAGCGTGCAGTGTG
rJMSF042F06+          CTATCAGCCCCCGACAGTGGTTCCTGGAGGTGACCTTGCCCGTGTGCAGCGTGCAGTGTG
rJMFF027B08+          CTATCAGCCCCCGACAGTGGTTCCTGGAGGTGACCTTGCCCGTGTGCAGCGTGCAGTGTG
rJMFF039G11+          CTATCAGCCCCCGACAGTGGTTCCTGGAGGTGACCTTGCCCGTGTGCAGCGTGCAGTGTG
rJMFF013K13+          CTATCAGCCCCCGACAGTGGTTCCTGGAGGTGACCTTGCCCGTGTGCAGCGTGCAGTGTG
rJMSF005E13+          CTATCAGCCCCCGACAGTGGTTCCTGGAGGTGACCTTGCCCGTGTGCAGCGTGCAGTGTG
rJMFF012K08+          CTATCAGCCCCCGACAGTGGTTCCTGGAGGTGACCTTGCCCGTGTGCAGCGTGCAGTGTG
rJMFF024F11+          CTATCAGCCCCCGACAGTGGTTCCTGGAGGTGACCTTGCCCGTGTGCAGCGTGCAGTGTG
rJMFF050H07+          CTATCAGCCCCCGACAGTGGTTCCTGGAGGTGACCTTGCCCGTGTGCAGCGTGCAGTGTG
                      ____________________________________________________________
consensus             CTATCAGCCCCCGACAGTGGTTCCTGGAGGTGACCTTGCCCGTGTGCAGCGTGCAGTGTG
 
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rJMSF022O19+          CATGATCAGCAACAACACTGCTGTGGCTGAGGTCTTCTCCCGAATTGACCACAAATTTGA
rJMSF042F06+          CATGATCAGCAACAACACTGCTGTGGCTGAGGTCTTCTCCCGAATTGACCACAAATTTGA
rJMFF027B08+          CATGATCAGCAACAACACTGCTGTGGCTGAGGTCTTCTCCCGAATTGACCACAAATTTGA
rJMFF039G11+          CATGATCAGCAACAACACTGCTGTGGCTGAGGTCTTCTCCCGAATTGACCACAAATTTGA
rJMFF013K13+          CATGATCAGCAACAACACTGCTGTGGCTGAGGTCTTCTCCCGAATTGACCACAAATTTGA
rJMSF005E13+          CATGATCAGCAACAACACTGCTGTGGCTGAGGTCTTCTCCCGAATTGACCACAAATTTGA
rJMFF012K08+          CATGATCAGCAACAACACTGCTGTGGCTGAGGTCTTCTCCCGAATTGACCACAAATTTGA
rJMFF024F11+          CATGATCAGCAACAACACTGCTGTGGCTGAGGTCTTCTCCCGAATTGACCACAAATTTGA
rJMFF050H07+          CATGATCAGCAACAACACTGCTGTGGCTGAGGTCTTCTCCCGAATTGACCACAAATTTGA
                      ____________________________________________________________
consensus             CATGATCAGCAACAACACTGCTGTGGCTGAGGTCTTCTCCCGAATTGACCACAAATTTGA
 
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rJMSF022O19+          CCTTATGTATTCCAAGCGTGCCTTTGTCCATTGGTATGTGGGTGAGGGTATGGAGGAAGG
rJMSF042F06+          CCTTATGTATTCCAAGCGTGCCTTTGTCCATTGGTATGTGGGTGAGGGTATGGAGGAAGG
rJMFF027B08+          CCTTATGTATTCCAAGCGTGCCTTTGTCCATTGGTATGTGGGTGAGGGTATGGAGGAAGG
rJMFF039G11+          CCTTATGTATTCCAAGCGTGCCTTTGTCCATTGGTATGTGGGTGAGGGTATGGAGGAAGG
rJMFF013K13+          CCTTATGTATTCCAAGCGTGCCTTTGTCCATTGGTATGTGGGTGAGGGTATGGAGGAAGG
rJMSF005E13+          CCTTATGTATTCCAAGCGTGCCTTTGTCCATTGGTATGTGGGTGAGGGTATGGAGGAAGG
rJMFF012K08+          CCTTATGTATTCCAAGCGTGCCTTTGTCCATTGGTATGTGGGTGAGGGTATGGAGGAAGG
rJMFF024F11+          CCTTATGTATTCCAAGCGTGCCTTTGTCCATTGGTATGTGGGTGAGGGTATGGAGGAAGG
rJMFF050H07+          CCTTATGTATTCCAAGCGTGCCTTTGTCCATTGGTATGTGGGTGAGGGTATGGAGGAAGG
                      ____________________________________________________________
consensus             CCTTATGTATTCCAAGCGTGCCTTTGTCCATTGGTATGTGGGTGAGGGTATGGAGGAAGG
 
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rJMSF022O19+          CGAGTTCTCAGAAGCCCGTGAAGATCTTGCTGCCCTTGAGAAGGACTACGAGGAAGTTGG
rJMSF042F06+          CGAGTTCTCAGAAGCCCGTGAAGATCTTGCTGCCCTTGAGAAGGACTACGAGGAAGTTGG
rJMFF027B08+          CGAGTTCTCAGAAGCCCGTGAAGATCTTGCTGCCCTTGAGAAGGACTACGAGGAAGTTGG
rJMFF039G11+          CGAGTTCTCAGAAGCCCGTGAAGATCTTGCTGCCCTTGAGAAGGACTACGAGGAAGTTGG
rJMFF013K13+          CGAGTTCTCAGAAGCCCGTGAAGATCTTGCTGCCCTTGAGAAGGACTACGAGGAAGTTGG
rJMSF005E13+          CGAGTTCTCAGAAGCCCGTGAAGATCTTGCTGCCCTTGAGAAGGACTACGAGGAAGTTGG
rJMFF012K08+          CGAGTTCTCAGAAGCCCGTGAAGATCTTGCTGCCCTTGAGAAGGACTACGAGGAAGTTGG
rJMFF024F11+          CGAGTTCTCAGAAGCCCGTGAAGATCTTGCTGCCCTTGAGAAGGACTACGAGGAAGTTGG
rJMFF025F17+                                     TGCTGCCCTTGAGAAGGACTACGAGGAAGTTGG
rJMFF050H07+          CGAGTTCTCAGAAGCCCGTGAAGATCTTGCTGCCCTTGAGAAGGACTACGAGGAAGTTGG
JMFF025F17-                                      TGCTGCCCTTGAGAAGGACTACGAGGAAGTTGG
                      ____________________________________________________________
consensus             CGAGTTCTCAGAAGCCCGTGAAGATCTTGCTGCCCTTGAGAAGGACTACGAGGAAGTTGG
 
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rJMSF022O19+          AGCAGAGGGTGTCGATGAAGAAGAAGAAGGGGAAGACTACTAAAGTATTGCAAGTCGAGG
rJMSF042F06+          AGCAGAGGGTGTCGATGAAGAAGAAGAAGGGGAAGACTACTAAAGTATTGCAAGTCGAGG
rJMFF027B08+          AGCAGAGGGTGTCGATGAAGAAGAAGAAGGGGAAGACTACTAAAGTATTGCAAGTCGAGG
rJMFF039G11+          AGCAGAGGGTGTCGATGAAGAAGAAGAAGGGGAAGACTACTAAAGTATTGCAAGTCGAGG
rJMFF013K13+          AGCAGAGGGTGTCGATGAAGAAGAAGAAGGGGAAGACTACTAAAGTATTGCAAGTCGAGG
rJMSF005E13+          AGCAGAGGGTGTCGATGAAGAAGAAGAAGGGGAAGACTACTAAAGTATTGCAAGTCGAGG
rJMFF012K08+          AGCAGAGGGTGTCGATGAAGAAGAAGAAGGGGAAGACTACTAAAGTATTGCAAGTCGAGG
rJMFF024F11+          AGCAGAGGGTGTCGATGAAGAAGAAGAAGGGGAAGACTACTAAAGTATTGCAAGTCGAGG
rJMFF025F17+          AGCAGAGGGTGTCGATGAAGAAGAAGAAGGGGAAGACTACTAAAGTATTGCAAGTCGAGG
rJMFF050H07+          AGCAGAGGGTGTCGATGAAGAAGAAGAAGGGGAAGACTACTAAAGTATTGCAAGTCGAGG
JMFF025F17-           AGCAGAGGGTGTCGATGAAGAAGAAGAAGGGGAAGACTACTAAAGTATTGCAAGTCGAGG
                      ____________________________________________________________
consensus             AGCAGAGGGTGTCGATGAAGAAGAAGAAGGGGAAGACTACTAAAGTATTGCAAGTCGAGG
 
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rJMSF022O19+          ACAGTGACAACAACAAATCTGTCTTGTCTATTGTACCATGTTGCAAATTATTACTCGGTA
rJMSF042F06+          ACAGTGACAACAACAAATCTGTCTTGTCTATTGTACCATGTTGCAAATTATTACTCGGTA
rJMFF027B08+          ACAGTGACAACAACAAATCTGTCTTGTCTATTGTACCATGTTGCAAATTATTACTCGGTA
rJMFF039G11+          ACAGTGACAACAACAAATCTGTCTTGTCTATTGTACCATGTTGCAAATTATTACTCGGTA
rJMFF013K13+          ACAGTGACAACAACAAATCTGTCTTGTCTATTGTACCATGTTGCAAATTATTACTCGGTA
rJMSF005E13+          ACAGTGACAACAACAAATCTGTCTTGTCTATTGTACCATGTTGCAAATTATTACTCGGTA
rJMFF012K08+          ACAGTGACAACAACAAATCTGTCTTGTCTATTGTACCATGTTGCAAATTATTACTCGGTA
rJMFF024F11+          ACAGTGACAACAACAAATCTGTCTTGTCTATTGTACCATGTTGCAAATTATTACTCGGTA
rJMFF025F17+          ACAGTGACAACAACAAATCTGTCTTGTCTATTGTACCATGTTGCAAATTATTACTCGGTA
rJMFF050H07+          ACAGTGACAACAACAAATCTGTCTTGTCTATTGTACCATGTTGCAAATTATTACTCGGTA
JMFF025F17-           ACAGTGACAACAACAAATCTGTCTTGTCTATTGTACCATGTTGCAAATTATTACTCGGTA
                      ____________________________________________________________
consensus             ACAGTGACAACAACAAATCTGTCTTGTCTATTGTACCATGTTGCAAATTATTACTCGGTA
 
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rJMSF022O19+          TATCCTTGTATTCATACTTGTATTCTTGTGTGTTCCAGTAGTCAATTTGAAT        
rJMSF042F06+          TATCCTTGTATTCATACTTGTATTCTTGTGTGTTCCAGTAGTCAATTTGAATTACCATGA
rJMFF027B08+          TATCCTTGTATTCATACTTGTATTCTTGTGTGTTCCAGTAGTCAATTTGAATTACCATGA
rJMFF039G11+          TATCCTTGTATTCATACTTGTATTCTTGTGTGTTCCAGTAGTCAATTTGAATTACCATGA
rJMFF013K13+          TATCCTTGTATTCATACTTGTATTCTTGTGTGTTCCAGTAGTCAATTTGAATTACCATGA
rJMSF005E13+          TATCCTTGTATTCATACNTGTATTCTTGTGTGTTCCAGTAGTCAATTTGAATTACCATGA
rJMFF012K08+          TATCCTTGTATTCATACTTGTATTCTTGTGTGTTCCAGTAGTCAATTTGAATTACCATGA
rJMFF024F11+          TATCCTTGTATTCATACTTGTATTCTTGTGTGTTCCAGTAGTCAATTTGAATTACCATGA
rJMFF025F17+          TATCCTTGTATTCATACTTGTATTCTTGTGTGTTCCAGTAGTCAATTTGAATTACCATGA
rJMFF050H07+          TATCCTTGTATTCATACTTGTATTCTTGTGTGTTCCAGTAGTCAATTTGAATTACCATGA
JMFF025F17-           TATCCTTGTATTCATACTTGTATTCTTGTGTGTTCCAGTAGTCAATTTGAATTACCATGA
                      ____________________________________________________________
consensus             TATCCTTGTATTCATACTTGTATTCTTGTGTGTTCCAGTAGTCAATTTGAATTACCATGA
 
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rJMSF042F06+          TTTGAATTACCA                                                
rJMFF027B08+          TTTGAATTACCATGATGGTTCGTAT                                   
rJMFF039G11+          TTTGAATTACCATGATGGTTCGTA                                    
rJMFF013K13+          -TTGAATTACCATGATGGTTCGTAT                                   
rJMFF012K08+          TTTGAATTACCATGATGGTTCGTATTAGTAATTAAAT                       
rJMFF024F11+          TTTGAATTACCATGATGGTTCGTATTAGTAATTAAAT                       
rJMFF025F17+          TTTGAATTACCATGATGGTTCGTATTAGTAATTAA                         
rJMFF050H07+          TTTGAATTACCATGATGGTTCGTATTAGTAATTAAATGACTTTATGAATG          
JMFF025F17-           TTTGAATTACCATGATGGTTCGTATTAGTAATTAAATGACTTTATGAATGAAAAAAAAAA
                      ____________________________________________________________
consensus             TTTGAATTACCATGATGGTTCGTATTAGTAATTAAATGACTTTATGAATGAAAAAAAAAA