Contig 003142:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018A09Sequence377003142 (4)ref|XP_004230322.1|1e-24PREDICTED: importin subunit alpha-1 [Solanum lycopersicum]715012493 (5)gb|AAK38726.1|AF369706_12e-92importin alpha 1 [Capsicum annuum]
JMFF018E13Sequence113003142 (4)720012493 (5)gb|AAK38726.1|AF369706_15e-83importin alpha 1 [Capsicum annuum]
JMFF032H16Sequence113003142 (4)725012493 (5)gb|AAK38726.1|AF369706_12e-84importin alpha 1 [Capsicum annuum]
JMFS065G04Sequence458003142 (4)ref|XP_002512528.1|3e-23importin alpha, putative [Ricinus communis] gb|EEF49980.1| importin alpha, putat

Alignment

This contig is upended


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JMFF018A09+                                                     CCATNCCCCTTGGNCCAT
                      ____________________________________________________________
consensus                                                       CCATNCCCCTTGGNCCAT
 
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JMFF018A09+           CAATGGTATNCTTTCCAGCCGTTTTTTTATAGCGGCGGCGGATTGAGTAGCGTCGGGGGG
                      ____________________________________________________________
consensus             CAATGGTATNCTTTCCAGCCGTTTTTTTATAGCGGCGGCGGATTGAGTAGCGTCGGGGGG
 
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JMFS065G04-                                           CCTCGCGGCGCTTCTTAAGCAGGTTGTC
JMFF018A09+           GAGTTGTTGTTGTTGGGACTGAAGGAGAAGGCCCTCGCGGNGCTTTTTAAGCAGGTTGTC
                      ____________________________________________________________
consensus             GAGTTGTTGTTGTTGGGACTGAAGGAGAAGGCCCTCGCGGCGCTTTTTAAGCAGGTTGTC
 
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JMFS065G04-           CTCGCGCTTGCTCTTCCTGATCTCCACCATGTTGTCTTCCCTCCGCCGCCGCGCCTTGTC
JMFF018A09+           CTCGCGCTTGCTTTTCCTGATNTCCNCCANGTTGTTTTCCCTCCGCCGCCGCGCCTTGTC
                      ____________________________________________________________
consensus             CTCGCGCTTGCTTTTCCTGATCTCCACCATGTTGTTTTCCCTCCGCCGCCGCGCCTTGTC
 
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JMFS065G04-           CGCATCCACCCCAGTTTTGTACGACTTTTTCCGGGCATCCGCCCGGGTGCTTGGCCGCAA
JMFF018A09+           CGCATCCNCCCCAGTTTTGTNCGACTTTTTCCGGGCATCCNCCCGGGTGCTTGGCCGCAA
                      ____________________________________________________________
consensus             CGCATCCACCCCAGTTTTGTACGACTTTTTCCGGGCATCCGCCCGGGTGCTTGGCCGCAA
 
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JMFS065G04-           AGACATTTTTTTTTTTTGTTTTCACACCCGCCGTGCAAGTGTTCGACGAAATGTCGAAGA
JMFF018E13+                  TTTTTTTTTTGTTTTCACACCCGCCGTGCAAGTGTTCGACGAAATGTCGAAGA
JMFF032H16+                  TTTTTTTTTTGTTTTCACACCCGCCGTGCAAGTGTTCGACGAAATGTCGAAGA
JMFF018A09+           AGACA-TTTTTTTTTTTGTTTTCACACCCGCCGTGCAAGTGTTCGACGAAATGTCGAAGA
                      ____________________________________________________________
consensus             AGACATTTTTTTTTTTTGTTTTCACACCCGCCGTGCAAGTGTTCGACGAAATGTCGAAGA
 
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JMFS065G04-           TAGATAGAGTGAGTGA                                            
JMFF018E13+           TAGATAGAGTGAGTGAGAGGGCAGAGTTTGTGTTACGAGATTTGGTTGACTGAAAAACGT
JMFF032H16+           TAGATAGAGTGAGTGAGAGGGCAGAGTTTGTGTTACGAGATTTGGTTGACTGAAAAACGT
JMFF018A09+           TAGATAGAGTGAGTGAGAGGGCAGAGTTTGTGTTACGAGATTTGGTTGACTGAAAAACGT
                      ____________________________________________________________
consensus             TAGATAGAGTGAGTGAGAGGGCAGAGTTTGTGTTACGAGATTTGGTTGACTGAAAAACGT