| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009K14 | Sequence | 518 | 003138 (4) | ref|XP_006425894.1| | 1e-14 | hypothetical protein CICLE_v10026058mg [Citrus clementina] gb|ESR39134.1| hypoth | 696 | 004121 (9) | ref|XP_009797839.1| | 1e-46 | PREDICTED: heat shock factor protein HSF24 [Nicotiana sylvestris] |
| JMFF017E10 | Sequence | 604 | 003138 (4) | ref|XP_006425894.1| | 6e-36 | hypothetical protein CICLE_v10026058mg [Citrus clementina] gb|ESR39134.1| hypoth | 728 | 004121 (9) | ref|XP_009797839.1| | 1e-53 | PREDICTED: heat shock factor protein HSF24 [Nicotiana sylvestris] |
| JMFF043G11 | Sequence | 645 | 003138 (4) | ref|XP_009589845.1| | 6e-58 | PREDICTED: heat shock factor protein HSF24 [Nicotiana tomentosiformis] | 646 | 004121 (9) | ref|XP_009797839.1| | 2e-21 | PREDICTED: heat shock factor protein HSF24 [Nicotiana sylvestris] |
| JMFF048N01 | Sequence | 431 | 003138 (4) | ref|NP_001119129.1| | 7e-08 | uncharacerized protein [Arabidopsis thaliana] gb|AEE86731.1| uncharacerized prot | 313 | 004121 (9) | |||
This contig is upended
. : . : . : . : . : . :
JMFF043G11+ GGGCTTT
____________________________________________________________
consensus GGGCTTT
. : . : . : . : . : . :
JMFF043G11+ TTGCTGGCACCACCTGAAGTCACAGTCTTCCGACGCTGGATGCTGCTGAGTAGCTCTTTC
____________________________________________________________
consensus TTGCTGGCACCACCTGAAGTCACAGTCTTCCGACGCTGGATGCTGCTGAGTAGCTCTTTC
. : . : . : . : . : . :
JMFF043G11+ TCCCCTCTCTGAAATTTCTCATTCGCGAATTCCCATTTGTCTGGTACAATCTTTCGGAAT
JMFF017E10+ GAAT
____________________________________________________________
consensus TCCCCTCTCTGAAATTTCTCATTCGCGAATTCCCATTTGTCTGGTACAATCTTTCGGAAT
. : . : . : . : . : . :
JMFF043G11+ CCATAGGTGTTGAGCTGGCGAACAAAGCTGGAGAAATTATTGTGCTTGAAATAACTGGGC
JMFF017E10+ CCATAGGTGTTGAGCTGGCGAACAAAACTGGAGAAATTATTGTGCTTGAAATAACTGGGC
____________________________________________________________
consensus CCATAGGTGTTGAGCTGGCGAACAAAGCTGGAGAAATTATTGTGCTTGAAATAACTGGGC
. : . : . : . : . : . :
JMFF043G11+ AGCAAATCCTTAGCGAATTCGGCGGTTTTCCAAACGACGAAGGTGGAGCCGCCGTCGCTC
JMFF009K14+ CGGTTTTCCAAACGACGAAGGTGGAGCCGCCGTCGCTC
JMFF017E10+ AGCAAATCCTTAGCGAATTCGGCGGTTTTCCAAACGACGAAGGTGGAGCCGCCGTCGCTC
____________________________________________________________
consensus AGCAAATCCTTAGCGAATTCGGCGGTTTTCCAAACGACGAAGGTGGAGCCGCCGTCGCTC
. : . : . : . : . : . :
JMFF043G11+ CACGATATCACGTCGTTGGTGGCCGGATCGTCCACCAGCTGGTACGTCTTCATCAGAAAC
JMFF009K14+ CACGATATCACGTCGTTGGTGGCCGGATCGTCCACCAGCTGGTACGTCTTCATCAGAAAC
JMFF048N01+ TCATCAGAAAC
JMFF017E10+ CACGATATCACGTCGTTGGTGGCCGGATCGTCCACCAGCTGGTACGTCTTCATCAGAAAC
____________________________________________________________
consensus CACGATATCACGTCGTTGGTGGCCGGATCGTCCACCAGCTGGTACGTCTTCATCAGAAAC
. : . : . : . : . : . :
JMFF043G11+ GGCGCCGGAACGGTCCTCTGCGACATCCTCTCCTCCTCCGACAACTCTAATCACCAAAAG
JMFF009K14+ GGCGCCGGAACGGTCCTCTGCGACATCCTCTCCTCCTCCGACAACTCTAATCACCAAAAG
JMFF048N01+ GGCGCCGGAACGGTCCTTTGCGACATCCTCTCCTCCTCCGACAACTCTAATCACCAAAAG
JMFF017E10+ GGCGCCGGAACGGTCCTCTGCGACATCCTCTCCTCCTCCGACAACTCTAATCACCAAAAG
____________________________________________________________
consensus GGCGCCGGAACGGTCCTCTGCGACATCCTCTCCTCCTCCGACAACTCTAATCACCAAAAG
. : . : . : . : . : . :
JMFF043G11+ AGCAACTCGAAAAAACACCAAAAAAATCTAAAAGCGCTAAACTAAGAACACAAGAAAAAT
JMFF009K14+ AGCAACTCGAAAAAACACCAAAAAAATCTAAAAGCGCTAAACTAAGAACACAAGAAAAAT
JMFF048N01+ AGCAACTCGAAAAAACACCAAAAAAATCTAAAAGCGCTAAACTAAGAACACAAGAAAAAT
JMFF017E10+ AGCAACTCGAAAAAACACCAAAAAAATCTAAAAGCGCTAAACTAAGAACACAAGAAAAAT
____________________________________________________________
consensus AGCAACTCGAAAAAACACCAAAAAAATCTAAAAGCGCTAAACTAAGAACACAAGAAAAAT
. : . : . : . : . : . :
JMFF043G11+ AAAAAAGCGAGATTGGGGGGACGTTTAGATGGAACAACTAAAGAGGAGGAGAGCGGTGAG
JMFF009K14+ AAAAAAGCGAGATTGGGGGGACGTTTAGATGGAACAACTAAAGAGGAGGAGAGCGGTGAG
JMFF048N01+ GAAAAAGCGAGATTGGGGGGACGTTTAGATGGAACAACTAAAGAGGAGGAGAGCGGTGAG
JMFF017E10+ AAAAAAGCGAGATTGGGGGGACGTTTAGATGGAACAACTAAAGAGGAGGAGAGCGGTGAG
____________________________________________________________
consensus AAAAAAGCGAGATTGGGGGGACGTTTAGATGGAACAACTAAAGAGGAGGAGAGCGGTGAG
. : . : . : . : . : . :
JMFF043G11+ GAATTCCCAATCCCAGCAGTAGAATCCGTAGAGGAAAACGCGAGAGCGTAAAACGTTGTT
JMFF009K14+ GAATTCCCAATCCCAGCAGTAGAATCCGTAGAGGAAAACGCGAGAGCGTAAAACGTTGTT
JMFF048N01+ GAATTCCCAATCCCAGCAGTAGAATCCGTAGAGGAAAACGCGAGAGCGTAAAACGTTGTT
JMFF017E10+ GAATTCCCAATCCCAGCAGTAGAATCCGTAGAGGAAAACGCGAGAGCGTAAAACGTTGTT
____________________________________________________________
consensus GAATTCCCAATCCCAGCAGTAGAATCCGTAGAGGAAAACGCGAGAGCGTAAAACGTTGTT
. : . : . : . : . : . :
JMFF043G11+ CTTATCGGGGACGATGATCTTAGTTTCTTCCATTTCCAGCTACGACCATAACTATTCTTC
JMFF009K14+ CTTATCGGGGACGATGATCTTAGTTTCTTCCATTTCCAGCTACGACCATAACTACTCTTC
JMFF048N01+ CTTATCGGGGACGATGATCTTAGTTTCTTCCATTTCCAGCTAGGACCATAACTATTCTTC
JMFF017E10+ CTTATCGGGGACGATGATCTTAGTTTCTTCCATTTCCAGCTACGACCATAACTACTCTTC
____________________________________________________________
consensus CTTATCGGGGACGATGATCTTAGTTTCTTCCATTTCCAGCTACGACCATAACTATTCTTC
. : . : . : . : . : . :
JMFF043G11+ TTCTTCCTCTTCGTCTTCTGTGTGCAATTAATCCCTTC
JMFF009K14+ TTCTTCCTCTTCGTCTTCTGTGTGCAATTAATCTCTTCCCTTCTTGAACGCCAAAAAGCG
JMFF048N01+ TTCTTCCTCTTCGTCTTCTGTGTGCAATTAATCTCTTCCCTTCTTGAACGCCAAAAAGCG
JMFF017E10+ TTCTTCCTCTTCGTCTTCTGTGTGCAATTAATCTCTTCCCTTCTTGAACGCCAAAAAGCG
____________________________________________________________
consensus TTCTTCCTCTTCGTCTTCTGTGTGCAATTAATCTCTTCCCTTCTTGAACGCCAAAAAGCG
. : . : . : . : . : . :
JMFF009K14+ GACAGTATATATACTGCAACTACCACTTTCCAAAGCAGAATAGAAAGGTCAAAGAAATCT
JMFF048N01+ GACAGTATATATACTGCAACTACCACTTTCCAAAGCAGAATAGAAAGGTCAAAGAAATCT
JMFF017E10+ GACAGTATATATACTGCAACTACCACTTTCCAAAGCAGAATAGAAAGGTCAAAGAAATCT
____________________________________________________________
consensus GACAGTATATATACTGCAACTACCACTTTCCAAAGCAGAATAGAAAGGTCAAAGAAATCT