Contig 003120:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014M16Sequence587003120 (4)ref|XP_007016496.1|3e-91Actin depolymerizing factor 4 [Theobroma cacao] gb|EOY34115.1| Actin depolymeriz699003120 (4)ref|XP_007016496.1|1e-90Actin depolymerizing factor 4 [Theobroma cacao] gb|EOY34115.1| Actin depolymeriz
JMFN001B08Sequence599003120 (4)ref|XP_007016496.1|4e-91Actin depolymerizing factor 4 [Theobroma cacao] gb|EOY34115.1| Actin depolymeriz
JMFN001C01Sequence523003120 (4)ref|XP_007016496.1|1e-91Actin depolymerizing factor 4 [Theobroma cacao] gb|EOY34115.1| Actin depolymeriz

Alignment

This contig is upended


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rJMFF014M16-                               GTATGCTTAAAAATCATTTAAGTTTCTCATCGGAGATGA
                      ____________________________________________________________
consensus                                  GTATGCTTAAAAATCATTTAAGTTTCTCATCGGAGATGA
 
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JMFN001B08+                                                         TCCCAGCATAATAT
rJMFF014M16-          AGCTTTAAAAGGTTTGACCGAACAGCATATCTTAACCAATTCTACTTCCCAGCATAATAT
                      ____________________________________________________________
consensus             AGCTTTAAAAGGTTTGACCGAACAGCATATCTTAACCAATTCTACTTCCCAGCATAATAT
 
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JMFN001B08+           AAACATTAGACATAACCAAAGAAACTTTTATGGATAGCTCTCCATTCCAGTGCACAGCAA
rJMFF014M16-          AAACATTAGACATAACCAAAGAAAACTTTATGGATAGCTCTCCATTCCAGGGAACAGCAA
JMFN001C01+                                                                 CAGCAA
JMFF014M16+                        AACCAAAGAAAACTTTATGGATAGCTCTCCATTCCAGGGAACAGCAA
                      ____________________________________________________________
consensus             AAACATTAGACATAACCAAAGAAAACTTTATGGATAGCTCTCCATTCCAGGGAACAGCAA
 
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JMFN001B08+           TTCAACTGCAGCCGGCTCGGCTTCTGATGACATCAAGGCCCATTTCAGTAGGGTCAGTGG
rJMFF014M16-          TTCAACTGCAGCCGGCTCGGCTTCTGATGACATCAAGGCCCATTTCAGTAGGGTCAGTGG
JMFN001C01+           TTCAACTGCAGCCGGCTCGGCTTCTGATGACATCAAGGCCCATTTCAGTAGGATCAGTGG
JMFF014M16+           TTCAACTGCAGCCGGCTCGGCTTCTGATGACATCAAGGCCCATTTCAGTAGGGTCAGTGG
                      ____________________________________________________________
consensus             TTCAACTGCAGCCGGCTCGGCTTCTGATGACATCAAGGCCCATTTCAGTAGGGTCAGTGG
 
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JMFN001B08+           CTTGCAACTCTATCTGGATGCCATCAAGCTCTCTCTTGAACCTATCTTTGGAGCTTGCAT
rJMFF014M16-          CTTGCAACTCTATCTGGATGCCATCAAGCTCTCTCTTGAACCTATCTTTGGAGCTTGCAT
JMFN001C01+           CTTGCAACTCTATCTGGATGCCATCAAGCTCTCTCTTGAACCTATCTTTGGAGCTTGCAT
JMFF014M16+           CTTGCAACTCTATCTGGATGCCATCAAGCTCTCTCTTGAACCTATCTTTGGAGCTTGCAT
                      ____________________________________________________________
consensus             CTTGCAACTCTATCTGGATGCCATCAAGCTCTCTCTTGAACCTATCTTTGGAGCTTGCAT
 
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JMFN001B08+           AGATCATCTTGCTTCTCACCCTAGCTGTATCCGGTGACCAAGCAATGAAGAAAATTCTGC
rJMFF014M16-          AGATCATCTTGCTTCTCACCCTAGCTGTATCGGGTGACCAAGCAATGAAGAAAATTCTGC
JMFN001C01+           AGATCATCTTGCTTCTCACCCTAGCTGTATCGGGTGACCAAGCAATGAAGAAAATTCTGC
JMFF014M16+           AGATCATCTTGCTTCTCACCCTAGCTGTATCGGGTGACCAAGCAATGAAGAAAATTCTGC
                      ____________________________________________________________
consensus             AGATCATCTTGCTTCTCACCCTAGCTGTATCGGGTGACCAAGCAATGAAGAAAATTCTGC
 
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JMFN001B08+           TCTTCTGGCAATTTTCCTTGGTTACAAAATCAAAGTCGTAGACAGCATAGCGACACTCAT
rJMFF014M16-          TCTTCTGGCAATTTTCCTTGGTTACAAAATCAAAGTCGTAGACAGCATAGCGACACTCAT
JMFN001C01+           TCTTCTGGCAATTTTCCTTGGTTACAAAATCAAAGTCGTAGACAGCATAGCGACACTCAT
JMFF014M16+           TCTTCTGGCAATTTTCCTTGGTTACAAAATCAAAGTCGTAGACAGCATAGCGACACTCAT
                      ____________________________________________________________
consensus             TCTTCTGGCAATTTTCCTTGGTTACAAAATCAAAGTCGTAGACAGCATAGCGACACTCAT
 
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JMFN001B08+           CTGCAGGAAGGCTGGCAGCGAAGTCCTCATAGCTTTGTGCGGGCTCACCAAGTTTTTCTA
rJMFF014M16-          CTGCAGGAAGGCTGGCAGCGAAGTCCTCATAGCTTTGTGCGGGCTCACCAAGTTTTTCTA
JMFN001C01+           CTGCAGGAAGGCTGGCAGCGAAGTCCTCATAGCTTTGTGCGGGCTCACCAAGTTTTTCTA
JMFF014M16+           CTGCAGGAAGGCTGGCAGCGAAGTCCTCATAGCTTTGTGCGGGCTCACCAAGTTTTTCTA
                      ____________________________________________________________
consensus             CTGCAGGAAGGCTGGCAGCGAAGTCCTCATAGCTTTGTGCGGGCTCACCAAGTTTTTCTA
 
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JMFN001B08+           CAATCACCTGCTTCTGCTTCTCTTCAATCTTGAAAACTACGAAGCGGAAACTTCTTTTTG
rJMFF014M16-          CAATCACCTGCTTCTGCTTCTCTTCAATCTTGAAAACTACGAAGCGGAAACTTCTTTTTG
JMFN001C01+           CAATCACCTGCTTCTGCTTCTCTTCAATCTTGAAAACTACGAAGCGGAAACTTCTTTTTG
JMFF014M16+           CAATCACCTGCTTCTGCTTCTCTTCAATCTTGAAAACTACGAAGCGGAAACTTCTTTTTG
                      ____________________________________________________________
consensus             CAATCACCTGCTTCTGCTTCTCTTCAATCTTGAAAACTACGAAGCGGAAACTTCTTTTTG
 
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JMFN001B08+           CCTTCAGTTCTAAAAACTTCAGCTTGCAGTCATCATGAACAGCCATCCCAGATGCTGCAT
rJMFF014M16-          CCTTCAGTTCTAAAAACTTCAGCTTGCAGTCATCATGAACAGCCATCCCAGATGCTGCAT
JMFN001C01+           CCTTCAGTTCTAAAAACTTCAGCTTGCAGTCATCATGAACAGCCATCCCAGATGCTGCAT
JMFF014M16+           CCTTCAGTTCTAAAAACTTCAGCTTGCAGTCATCATGAACAGCCATCCCAGATGCTGCAT
                      ____________________________________________________________
consensus             CCTTCAGTTCTAAAAACTTCAGCTTGCAGTCATCATGAACAGCCATCCCAGATGCTGCAT
 
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JMFN001B08+           TAGCCATGACTTCAGAAGGAGCAGAGAGATCGATCGATCGATTGAGGAAATCTAGGGTTG
rJMFF014M16-          TAGCCATGACTTCAGAAGGAGCAGAGAGATCGATCGATCGATTGAGGAAATCTAGGGTTG
JMFN001C01+           TAGCCATGACTTCAGAAGGAGCAGAGAGATCGATCGATCGATTGAGGAAATCTAGGGTTG
JMFF014M16+           TAGCCATGACTTCAGAAGGAGCAGAGAGATCGATCGATCGATTGAGGAAATCTAGGGTTG
                      ____________________________________________________________
consensus             TAGCCATGACTTCAGAAGGAGCAGAGAGATCGATCGATCGATTGAGGAAATCTAGGGTTG
 
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JMFN001B08+           AGATAAAGGCGTGGAGAAGATTGCAATTCCGATGACGAGACCAGA               
rJMFF014M16-          AGATAAAGGCGTGGAGAAGATTGCAATTCCGATGACGAGACCAGAGATATAGAGATAAAT
JMFN001C01+           AGATAAAGGCGTGGAGAAGATTGCAATTCCGATGACG                       
JMFF014M16+           AGATAAAGGCGTGGAGAAGATTGCAATTCCGATGACGAGACCAGAGATATAGAGATAAAT
                      ____________________________________________________________
consensus             AGATAAAGGCGTGGAGAAGATTGCAATTCCGATGACGAGACCAGAGATATAGAGATAAAT