Contig 003103:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF048C11+                                             TCAGACCCGAGGGGGGACTGCTGCTG
                      ____________________________________________________________
consensus                                               TCAGACCCGAGGGGGGACTGCTGCTG
 
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JMSF048C11+           CAACAGATGATCACTTGGATAGCAGTCAAAACCGGTTTTATTTCCCATGCTTACATTCAT
JMFF025D20+                                                      CCCATGCTTACATTCAT
                      ____________________________________________________________
consensus             CAACAGATGATCACTTGGATAGCAGTCAAAACCGGTTTTATTTCCCATGCTTACATTCAT
 
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JMSF048C11+           AATTAGATCATCCACCGGGGATGAGGTAGCTACTGGAAACGAATCAAACGATTGAATGAC
JMFF025D20+           AATTAGATCATCCACCGGGGATGAGGTAGCTACTGGAAACGAATCAAACGATTGAATGAC
                      ____________________________________________________________
consensus             AATTAGATCATCCACCGGGGATGAGGTAGCTACTGGAAACGAATCAAACGATTGAATGAC
 
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JMSF048C11+           ATCCATAAGAAGATTTCCATTGATAAGATCTTCAACATCTAGACATGGAAGGATATCGGG
JMFF025D20+           ATCCATAAGAAGATTTCCATTGATAAGATCTTCAACATCTAGACATGGAAGGATATCGGG
JMFF010I24+                                               ATCTAGACATGGAAGGATATCGGG
                      ____________________________________________________________
consensus             ATCCATAAGAAGATTTCCATTGATAAGATCTTCAACATCTAGACATGGAAGGATATCGGG
 
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JMSF048C11+           ACTCATAAAGCTAGAAATATTGCTGATTTCTGAACCAAATGACCAAGCAGGATCACAAAA
JMFF025D20+           ACTCATAAAGCTAGAAATATTGCTGATTTCTGAACCAAATGACCAAGCAGGATCACAAAA
JMFF010I24+           ACTCATAAAGCTAGAAATATTGCTGATTTCTGAACCAAATGACCAAGCAGGATCACAAAA
                      ____________________________________________________________
consensus             ACTCATAAAGCTAGAAATATTGCTGATTTCTGAACCAAATGACCAAGCAGGATCACAAAA
 
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JMSF048C11+           TTCACTATTTAAGAAAGACGACGATGAAGTTCCTGGTAGAATTGTCTCCTGTTCCATTTC
JMFF025D20+           TTCACTATTTAAGAAAGACGACGATGAAGTTCCTGGTAGAATTGTCTCCTGTTCCATTTC
JMFF010I24+           TTCACTATTTAAGAAAGACGACGATGAAGTTCCTGGTAGAATTGTCTCCTGTTCCATTTC
                      ____________________________________________________________
consensus             TTCACTATTTAAGAAAGACGACGATGAAGTTCCTGGTAGAATTGTCTCCTGTTCCATTTC
 
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JMSF048C11+           CTTAAAGTGTTGTTTCATTTCATCCACAAATTCAATCCTCCAATGAATTTCAGTGATCAG
JMFF025D20+           CTTAAAGTGTTGTTTCATTTCATCCACAAATTCAATCCTCCAATGAATTTCAGTGATCAG
JMFF010I24+           CTTAAAGTGTTGTTTCATTTCATCCACAAATTCAATCCTCCAATGAATTTCAGTGATCAG
                      ____________________________________________________________
consensus             CTTAAAGTGTTGTTTCATTTCATCCACAAATTCAATCCTCCAATGAATTTCAGTGATCAG
 
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JMSF048C11+           AAAACAGCATGAAACAGGCTATTGAAGATTGATGCAGTCACTGGGAGTAACCCAAAGAAG
JMFF025D20+           AAAACAGCATGAAACAGG--GTTGAAGATTGATGCAGTCACTGGGAGTAACCCAAAGAAG
JMFF010I24+           AAAACAGCATGAAACAGG--GTTGAAGATTGATGCAGTCACTGGGAGTAACCCAAAGAAG
                      ____________________________________________________________
consensus             AAAACAGCATGAAACAGG--GTTGAAGATTGATGCAGTCACTGGGAGTAACCCAAAGAAG
 
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JMSF048C11+           AAATGCAGCTATGTATGTATGGCTTCCCTAACCAAACGGCCAAACCCCAGAACTGAACTG
JMFF025D20+           AAATGCAGCTATGTATGTATGGCTTCCCTAACCAAACGGCCAAACCCCAGAACTGAACTG
JMFF010I24+           AAATGCAGCTATGTATGTATGGCTTCCCTAACCAAACGGCCAAACCCCAGAACTGAACTG
                      ____________________________________________________________
consensus             AAATGCAGCTATGTATGTATGGCTTCCCTAACCAAACGGCCAAACCCCAGAACTGAACTG
 
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JMSF048C11+           TTCTAATCTCAGTGGTTTTGAAGGAGTGAACAGATGAAGAGGTATGGGAAATCTTGTGAA
JMFF025D20+           TTCTAATCTCAGTGGTTTTGAAGGAGTGAACAGATGAAGAGGTATGGGAAATCTTGTGAA
JMFF010I24+           TTCTAATCTCAGTGGTTTTGAAGGAGTGAACAGATGAAGAGGTATGGGAAATCTTGTGAA
                      ____________________________________________________________
consensus             TTCTAATCTCAGTGGTTTTGAAGGAGTGAACAGATGAAGAGGTATGGGAAATCTTGTGAA
 
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JMSF048C11+           AAGCAAGATGTTCAGAAAAAAGACGAAATGGGAAACAGAAGGGATCAGGATTCAGGAGAG
JMFF025D20+           AAGCAAGATGTTCAGAAAAAAGACGAAATGGGAAACAGAAGGGATCAGGATTCAGGAGAG
JMFF010I24+           AAGCAAGATGTTCAGAAAAAAGACGAAATGGGAAACAGAAGGGATCAGGATTCAGGAGAG
                      ____________________________________________________________
consensus             AAGCAAGATGTTCAGAAAAAAGACGAAATGGGAAACAGAAGGGATCAGGATTCAGGAGAG
 
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JMSF048C11+           AGAGCTAAAGAAAACAGAAAGATGGAGAGGAATTATAAAGTGGGATTTTAA         
JMFF025D20+           AGAGCTAAAGAAAACAGAAAGATGGAGAGGAATTATAAAGTGGGATTTTAA         
JMFF010I24+           AGAGCTAAAGAAAACAGAAAGATGGAGAGGAATTATAAAGTGGGATTTTAATATAGAGAG
                      ____________________________________________________________
consensus             AGAGCTAAAGAAAACAGAAAGATGGAGAGGAATTATAAAGTGGGATTTTAATATAGAGAG