Contig 003092:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009D21Sequence487003092 (6)emb|CDP18583.1|2e-48unnamed protein product [Coffea canephora]617005556 (8)ref|XP_009597827.1|5e-77PREDICTED: chaperonin 60 subunit beta 2, chloroplastic [Nicotiana tomentosiform
JMFF048L08Sequence463003092 (6)emb|CDP18583.1|2e-44unnamed protein product [Coffea canephora]294005556 (8)
JMFF049M05Sequence475003092 (6)emb|CDP18583.1|5e-45unnamed protein product [Coffea canephora]401005556 (8)dbj|BAH20275.1|3e-24AT1G55490 [Arabidopsis thaliana]
JMFS025A09Sequence602003092 (6)emb|CDP18583.1|2e-90unnamed protein product [Coffea canephora]
JMSF022E04Sequence664003092 (6)emb|CDP18583.1|2e-99unnamed protein product [Coffea canephora]774005556 (8)ref|XP_009597827.1|2e-114PREDICTED: chaperonin 60 subunit beta 2, chloroplastic [Nicotiana tomentosiform
JMSF051A10Sequence675003092 (6)emb|CDP18583.1|3e-102unnamed protein product [Coffea canephora]729005556 (8)ref|XP_009597827.1|9e-102PREDICTED: chaperonin 60 subunit beta 2, chloroplastic [Nicotiana tomentosiform

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF051A10+ TT
                      ____________________________________________________________
consensus TT
 
. : . : . : . : . : . :
JMSF051A10+ GACATGTTTTTCAGCTCAGACACTAAAGCTTTTGTGGTCTTCTCAATTCCTCTAGTGATC
JMFS025A09+ AGTGATC
JMSF022E04+ AGCTCAGACACTAAAGCTTTTGTGGTCTTCTCAATTCCTCTAGTGATC
                      ____________________________________________________________
consensus GACATGTTTTTCAGCTCAGACACTAAAGCTTTTGTGGTCTTCTCAATTCCTCTAGTGATC
 
. : . : . : . : . : . :
JMSF051A10+ AAGACAGGGTTTGCACCAGCTGCAACAACCTTGACACCTTCAGCAATTAGGCCTTGTGCA
JMFS025A09+ AAGACAGGGTTTGCACCAGCTGCAACAACCTTGACACCTTCAGCAATTAGGCCTTGTGCA
JMSF022E04+ AAGACAGGGTTTGCACCAGCTGCAACAACCTTGACACCTTCAGCAATTAGGCCTTGTGCA
                      ____________________________________________________________
consensus AAGACAGGGTTTGCACCAGCTGCAACAACCTTGACACCTTCAGCAATTAGGCCTTGTGCA
 
. : . : . : . : . : . :
JMSF051A10+ AGAACAACAGATGTTGTTGTCCCATCACCTGCCAAGTCATTGGTTTTGGCTGCAGCTTGT
JMFS025A09+ AGAACAACAGATGTTGTTGTCCCATCACCTGCCAAGTCATTGGTTTTGGCTGCAGCTTGT
JMSF022E04+ AGAACAACAGATGTTGTTGTCCCATCACCTGCCAAGTCATTGGTTTTGGCTGCAGCTTGT
                      ____________________________________________________________
consensus AGAACAACAGATGTTGTTGTCCCATCACCTGCCAAGTCATTGGTTTTGGCTGCAGCTTGT
 
. : . : . : . : . : . :
JMSF051A10+ CTCACCAGCTTAGCACCTATGTTCTCCACAGGATCCTCCAGCTCAACCTCTCTGGCCACA
JMFS025A09+ CTCACCAGCTTAGCACCTATGTTCTCCACAGGATCCTCCAGCTCAACCTCTCTGGCCACA
JMSF022E04+ CTCACCAGCTTAGCACCTATGTTCTCCACAGGATCCTCCAGCTCAACCTCTCTGGCCACA
JMFF009D21+ GGCCACA
                      ____________________________________________________________
consensus CTCACCAGCTTAGCACCTATGTTCTCCACAGGATCCTCCAGCTCAACCTCTCTGGCCACA
 
. : . : . : . : . : . :
JMSF051A10+ GTAACTCCATCATTGACAATTTTTGGAGCACCATACTTGCTCTCAAGAACAACATTCCTT
JMFS025A09+ GTAACTCCATCATTGACAATTTTTGGAGCACCATACTTGCTCTCAAGAACAACATTCCTT
JMSF022E04+ GTAACTCCATCATTGACAATTTTTGGAGCACCATACTTGCTCTCAAGAACAACATTCCTT
JMFF049M05+ TCCATCATTGACAATTTTGGGAGCACCATACTTGCTCTCAAGAACAACATTCCTT
JMFF048L08+ CCATCATTGACATTTTTTGGAGCACCATACTTGCTCTCAAGAACAACATTCCTT
JMFF009D21+ GTAACTCCATCATTGACAATTTTTGGAGCACCATACTTGCTCTCAAGAACAACATTCCTT
                      ____________________________________________________________
consensus GTAACTCCATCATTGACAATTTTTGGAGCACCATACTTGCTCTCAAGAACAACATTCCTT
 
. : . : . : . : . : . :
JMSF051A10+ CCCTTGGGACCAAGTGTGACCCCAACTAGATCAGAAAGCTTATTAACACCGATTTGGAGC
JMFS025A09+ CCCTTGGGACCAAGTGTGACCCCAACTAGATCAGAAAGCTTATTAACACCGATTTGGAGC
JMSF022E04+ CCCTTGGGACCAAGTGTGACCCCAACTAGATCAGAAAGCTTATTAACACCGATTTGGAGC
JMFF049M05+ CCCTTGGGACCAAGTGTGACCCCAACTAGATCAGAAAGCTTATTAACACCGATTTGGAGC
JMFF048L08+ CCCTTGGGACCAAGTGTGACCCCAACTAGATCAGAAAGCTTATTAACACCGATTTGGAGC
JMFF009D21+ CCCTTGGGACCAAGTGTGACCCCAACTAGATCAGAAAGCTTATTAACACCGATTTGGAGC
                      ____________________________________________________________
consensus CCCTTGGGACCAAGTGTGACCCCAACTAGATCAGAAAGCTTATTAACACCGATTTGGAGC
 
. : . : . : . : . : . :
JMSF051A10+ CTCTTAATAGCTGATCCATCCTTATTGAAATACAACTCCTTGGCTGCAGCTGTTATTTGG
JMFS025A09+ CTCTTAATAGCTGATCCATCCTTATTGAAATACAACTCCTTGGCTGCAGCTGTTATTTGG
JMSF022E04+ CTCTTAATAGCTGATCCATCCTTATTGAAATACAACTCCTTGGCTGCAGCTGTTATTTGG
JMFF049M05+ CTCTTAATAGCTGATCCATCCTTATTGAAATACAACTCCTTGGCTGCAGCTGTTATTTGG
JMFF048L08+ CTCTTAATAGCTGATCCATCCTTATTGAAATACAACTCCTTGGCTGCAGCTGTTATTTGG
JMFF009D21+ CTCTTAATAGCTGATCCATCCTTATTGAAATACAACTCCTTGGCTGCAGCTGTTATTTGG
                      ____________________________________________________________
consensus CTCTTAATAGCTGATCCATCCTTATTGAAATACAACTCCTTGGCTGCAGCTGTTATTTGG
 
. : . : . : . : . : . :
JMSF051A10+ CAAGGGCGTGTTTTGCGTAGAACAACATTTTTCCTCCTCCCAAAGGAGCTTGAAGATATA
JMFS025A09+ CAAGGGCGTGTTTTGCGTAGAACAACATTTTTCCTCTTCCCAAAGGAGCTTGAAGATATA
JMSF022E04+ CAAGGGCGTGTTTTGCGTAGAACAACATTTTTCCTCCTCCCAAAGGAGCTTGAAGATATA
JMFF049M05+ CAAGGGCGTGTTTTGGGTAGAACAACATTTTTCCTCCTCCCAAAGGAGCTTGAAGATATA
JMFF048L08+ CAAGGGCGTGTTTTGCGTAGAACAACATTTTTCCTCCTCCCAAAGGAGCTTGAAGATATA
JMFF009D21+ CAAGGGCGTGTTTTGCGTAGAACAACATTTTTCCTCCTCCCAAAGGAGCTTGAAGATATA
                      ____________________________________________________________
consensus CAAGGGCGTGTTTTGCGTAGAACAACATTTTTCCTCCTCCCAAAGGAGCTTGAAGATATA
 
. : . : . : . : . : . :
JMSF051A10+ GAAGCAAGAGATGACAACTTATTTGAAGAAATTGCAAGCCTGTTGTCCTTCATGCAGCTG
JMFS025A09+ GAAGCAAGAGATGACAACTTATTTGAAGAAATTGCAAGCCTGTTGTCCTTCATGCAGCTG
JMSF022E04+ GAAGCAAGAGATGACAACTTATTTGAAGAAATTGCAAGCCTGTTGTCCTTCATGCAGCTG
JMFF049M05+ GAAGCAAGAGATGACAACTTATTTGAAGAAATTGCAAGCCTGTTGTCCTTCATGCAGCTG
JMFF048L08+ GAAGCAAGAGATGACAACTTATTTGAAGAAATTGCAAGCCTGTTGTCCTTCATGCAGCTG
JMFF009D21+ GAAGCAAGAGATGACAACTTATTTGAAGAAATTGCAAGCCTGTTGTCCTTCATGCAGCTG
                      ____________________________________________________________
consensus GAAGCAAGAGATGACAACTTATTTGAAGAAATTGCAAGCCTGTTGTCCTTCATGCAGCTG
 
. : . : . : . : . : . :
JMSF051A10+ CTAGGAGCAGCCAATGAACCAGCTGAAGACATGCCAGCAAAGGTAGAAGCCATTTGCACC
JMFS025A09+ CTAGGAGCAGCCAATGAACCAGCTGAAGACATGCCAGCAAAGGTAGAAGCCATTTGCACC
JMSF022E04+ CTAGGAGCAGCCAATGAACCAGCTGAAGACATGCCAGCAAAGGTAGAAGCCATTTGCACC
JMFF049M05+ CTAGGAGCAGCCAATGAACCAGCTGAAGACATGCCAGCAAAGGTAGAAGCCATTTGCACC
JMFF048L08+ CTAGGAGCAGCCAATGAACCAGCTGAAGACATGCCAGCAAAGGTAGAAGCCATTTGCACC
JMFF009D21+ CTAGGAGCAGCCAATGAACCAGCTGAAGACATGCCAGCAAAGGTAGAAGCCATTTGCACC
                      ____________________________________________________________
consensus CTAGGAGCAGCCAATGAACCAGCTGAAGACATGCCAGCAAAGGTAGAAGCCATTTGCACC
 
. : . : . : . : . : . :
JMSF051A10+ GGAAAGCGGAGGCTGAGTTAGGGTTTATCCGATGAGAAGGATGCTAGACAGTAGAGTCGT
JMFS025A09+ GGAAAGCGGAGGCTGAGTTAGGGTTTATCCGATGAGAAGGATGCTAGACAGTAGA
JMSF022E04+ GGAAAGCGGAGGCTGAGTTAGGGTTTATCCGATGAGAAGGATGCTAGACAGTAGAGTCGT
JMFF049M05+ GGAAAGCGGAGGCTGAGTTAGGGTTTATCCGATGAGAAGGATGCTAGACAGTAGAGTCGT
JMFF048L08+ GGAAAGCGGAGGCTGAGTTAGGGTTTATCCGATGAGAAGGATGCTAGACAGTAGAGTCGT
JMFF009D21+ GGAAAGCGGAGGCTGAGTTAGGGTTTATCCGATGAGAAGGATGCTAGACAGTAGAGTCGT
                      ____________________________________________________________
consensus GGAAAGCGGAGGCTGAGTTAGGGTTTATCCGATGAGAAGGATGCTAGACAGTAGAGTCGT
 
. : . : . : . : . : . :
JMSF051A10+ TGAGGCTCGGAG
JMSF022E04+ TGAGGCTCGGAGAGT
JMFF049M05+ TGAGGCTCGGAGAGTGAGTAGAGGATACGATTAGGTTTATTATATAATCTGGAGTGCCAA
JMFF048L08+ TGAGGCTCGGAGAGTGAGTAGAGGATACGATTAGGTTTATTATATAATC
JMFF009D21+ TGAGGCTCGGAGAGTGAGTAGAGGATACGATTAGGTTTATTATATAATCTGGAGTGCCAA
                      ____________________________________________________________
consensus TGAGGCTCGGAGAGTGAGTAGAGGATACGATTAGGTTTATTATATAATCTGGAGTGCCAA