Contig 003079:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP007D08Sequence330003079 (7)
JMFF006N04Sequence562003079 (7)762003079 (7)ref|XP_002527602.1|1e-84nucleic acid binding protein, putative [Ricinus communis] gb|EEF34783.1| nucleic
JMFF026B14Sequence561003079 (7)705003079 (7)ref|XP_011029461.1|4e-82PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Populus euphrat
JMFF034O17Sequence485003079 (7)793003079 (7)ref|XP_002527602.1|5e-86nucleic acid binding protein, putative [Ricinus communis] gb|EEF34783.1| nucleic

Alignment

This contig is upended


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rJMFF006N04-             ATGAATCATTGAATATTCTTCTCACCGGTATGCTGGGGAACACACAAAAATATAGGA
rJMFF026B14-                      TGAATATTCTTCTCACCGGTATGCTGGGGAACACACAAAAATATAGGA
rJMFF034O17-                      TGAATATTCTTCTCACCGGTATGCTGGGGAACACACAAAAATATAGGA
                      ____________________________________________________________
consensus                ATGAATCATTGAATATTCTTCTCACCGGTATGCTGGGGAACACACAAAAATATAGGA
 
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rJMFF006N04-          CAATGGAATAGAATAGTTCACTTTGCGACGATCCAAGCAAGAATGCTATAGTTCCGGTTC
rJMFF026B14-          CAATGGAATAGAATAGTTCACTTTGCGACGATCCAAGCAAGAATGCTATAGTTCCGGTTC
rJMFF034O17-          CAATGGAATAGAATAGTTCACTTTGCGACGATCCAAGCAAGAATGCTATAGTTCCGGTTC
                      ____________________________________________________________
consensus             CAATGGAATAGAATAGTTCACTTTGCGACGATCCAAGCAAGAATGCTATAGTTCCGGTTC
 
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rJMFF006N04-          CTTACACATCTTCAGGTCAGAATAAGATTCTAAAATGGATAATTGTTGAAGCCCTACCAG
rJMFF026B14-          CTTACACATTTTCAGGTCAGAATAAGATTCTAAAATGGATAATTGTTGAAGCCCTACCAG
rJMFF034O17-          CTTACACATTTTCAGGTCAGAATAAGATTCTAAAATGGATAATTGTTGAAGCCCTACCAG
                      ____________________________________________________________
consensus             CTTACACATTTTCAGGTCAGAATAAGATTCTAAAATGGATAATTGTTGAAGCCCTACCAG
 
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rJMFF006N04-          TTCATGTGCTCAGCCATCCAAGTCAAACTAAGATTATGCAACCAGCTTTACATAGCAACA
rJMFF026B14-          TTCATGTGCTCAGCCATCCAAGTCAAACTAAGATTATGCAACCAGCTTTACATAGCAACA
rJMFF034O17-          TTCATGTGCTCAGCCATCCAAGTCAAACTAAGATTATGCAACCAGCTTTACATAGCAACA
                      ____________________________________________________________
consensus             TTCATGTGCTCAGCCATCCAAGTCAAACTAAGATTATGCAACCAGCTTTACATAGCAACA
 
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rJMFF006N04-          TCTGGATCCAACCGTCGCTGAATAGCAGCCGCAGCCTCAAAGTTGCCAAGCTTGTACTGG
rJMFF026B14-          TCTGGATCCAACCGTCGCTGAATAGCAGCCGCAGCCTCAAAGTTGCCAAGCTTGTACTGG
rJMFF034O17-          TCTGGATCCAACCGTCGCTGAATAGCAGCCGCAGCCTCAAAGTTGCCAAGCTTGTACTGG
                      ____________________________________________________________
consensus             TCTGGATCCAACCGTCGCTGAATAGCAGCCGCAGCCTCAAAGTTGCCAAGCTTGTACTGG
 
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rJMFF006N04-          TAGGCCATCTCTTCCCGTAGTTGAGCTTGCCCTTTCATTGCCTGTGCCATTCCAGTTCGC
rJMFF026B14-          TAGGCCATCTCTTCCCGTAGTTGAGCTTGCTCTTTCATTGCCTGTGCCATTCCAGTTCGC
rJMFF034O17-          TAGGCCATCTCTTCCCGTAGTTGAGCTTGCTCTTTCATTGCCTGTGCCATTCCAGTTCGC
                      ____________________________________________________________
consensus             TAGGCCATCTCTTCCCGTAGTTGAGCTTGCTCTTTCATTGCCTGTGCCATTCCAGTTCGC
 
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rJMFF006N04-          ATGGAGTGTTGCATTGATTGCAATTGTTCTTCTTTCTGCCTTTCACGTTCTCGAAGCAGT
rJMFF026B14-          ATGGAGTGTTGCATTGATTGCAATTGTTCTTCTTTCTGCCTTTCACGTTCTCGAAGCAGT
rJMFF034O17-          ATGGAGTGTTGCATTGATTGCAATTGTTCTTCTTTCTGCCTTTCACGTTCTCGAAGCAGT
                      ____________________________________________________________
consensus             ATGGAGTGTTGCATTGATTGCAATTGTTCTTCTTTCTGCCTTTCACGTTCTCGAAGCAGT
 
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rJMFF006N04-          TCTTGCCGACGCTGTTCTTCATCATTAAACACAGTACGTTCAGTGTCCACAGCCTTATCT
rJMFF026B14-          TCTTGCCGACGCTGTTCTTCATCATTAAACACAGTACGTTCAGTGTCCACAGCCTTATCT
rJMFF034O17-          TCTTGCCGACGCTGTTCTTCATCATTAAACACAGTACGTTCAGTGTCCACAGCCTTATCT
                      ____________________________________________________________
consensus             TCTTGCCGACGCTGTTCTTCATCATTAAACACAGTACGTTCAGTGTCCACAGCCTTATCT
 
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rJMFF006N04-          GGGCCTTTCTTCATTTCCTTTTCCATTTGCCGTTGGTAATAAGCATCAAGGTTATAATAT
rJMFF026B14-          GGGCCTTTCTTCATTTCCTTTTCCATTTGCCGTTGGTAATAAGCATCAAGGTTATAATAT
rJMFF034O17-          GGGCCTTTCTTCATTTCCTTTTCCATTTGCCGTTGGTAATAAGCATCAAGGTTATAATAT
                      ____________________________________________________________
consensus             GGGCCTTTCTTCATTTCCTTTTCCATTTGCCGTTGGTAATAAGCATCAAGGTTATAATAT
 
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rJMFF006N04-          TTCTTAGAAGGGAAGGTAGCTGTGTTATGATCCTCCATGAATTCTTTGAATAACTGTTTC
rJMFF026B14-          TTCTTAGAAGGGAAGGTTGCTGTGTTATGATCCTCCATGAATTCTTTGAATAACTGTTTC
rJMFF034O17-          TTCTTAGAAGGGAAGGTTGCTGTGTTATGATCCTCCATGAATTCTTTGAATAACTGTTTC
                      ____________________________________________________________
consensus             TTCTTAGAAGGGAAGGTTGCTGTGTTATGATCCTCCATGAATTCTTTGAATAACTGTTTC
 
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rJMFF006N04-          TCCTCCCAGTTGGGCAGGCTTTCCAGGTTCACCTGTTTTACTTCTGCCAGCCATGCAGTA
rJMFF026B14-          TCCTCCCAGTTGGGCAGGCTTTCCAGGTTCACCTGTTTTACTTCTGCCAGCCATGCAGTA
rJMFF034O17-          TCCTCCCAGTTGGGCAGGCTTTCCAGGTTCACCTGTTTTACTTCTGCCAGCCATGCAGTA
                      ____________________________________________________________
consensus             TCCTCCCAGTTGGGCAGGCTTTCCAGGTTCACCTGTTTTACTTCTGCCAGCCATGCAGTA
 
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rJMFF006N04-          AACTCTGGTCGNTTGGTCCACATATCAGTTTCTCTGATAATTCCATATTTTCCCCAGGAA
rJMFF026B14-          AACTCTGGTCGTTTGGTCCACATATCAGTTTCTCTGATAATTCCATATTTTCCCCAG   
rJMFF034O17-          AACTCTGGTCGTTTGGTCCACATATCAGTTTCTCTGATAATTCCATATTTTCCCCAGGAA
JMFF026B14+                                                  ATTCCATATTTTCCCCAGGAA
JMFF006N04+                                                  ATTCCATATTTTCCCCAGGAA
                      ____________________________________________________________
consensus             AACTCTGGTCGTTTGGTCCACATATCAGTTTCTCTGATAATTCCATATTTTCCCCAGGAA
 
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rJMFF006N04-          TCGGTGACAGCACTAGTTTTGCCCCTATCTTTCTCTTTCTTTTTA               
rJMFF034O17-          TCGGTGACAGCACTAGTTTTGCCCCTATCTTTCTCTTTCTTTTTATCCTTCTTTTTCNTC
JMFF026B14+           TCGGTGACAGCACTAGTTTTGCCCCTATCTTTCTCTTTCTTTTTATCCTTCTTTTTCTTC
JMFF034O17+                                                                  TCTTC
JMCP007D08+                                                        TCCTTCTTTTTCTTC
JMFF006N04+           TCGGTGACAGCACTAGTTTTGCCCCTATCTTTCTCTTTCTTTTTATCCTTCTTTTTCTTC
                      ____________________________________________________________
consensus             TCGGTGACAGCACTAGTTTTGCCCCTATCTTTCTCTTTCTTTTTATCCTTCTTTTTCTTC
 
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rJMFF034O17-          TTTCTCTTCTCCTTCTTCTTCCTC                                    
JMFF026B14+           TTTCTCTTCTCCTTCTTCTTCCTCTCCTCTCTTTCTTTCTCCTTTCTCCTCCTCCTCTCC
JMFF034O17+           TTTCTCTTCTCCTTCTTCTTCCTCTCCTCTCTTTCTTTCTCCTTTCTCCTCCTCCTCTCC
JMCP007D08+           TTTCTCTTCTCCTTCTTCTTCCTCTCCTCTCTTTCTTTCTCCTTTCTCCTCCTCCTCTCC
JMFF006N04+           TTTCTCTTCTCCTTCTTCTTCCTCTCCTCTCTTTCTTTCTCCTTTCTCCTCCTCCTCTCC
                      ____________________________________________________________
consensus             TTTCTCTTCTCCTTCTTCTTCCTCTCCTCTCTTTCTTTCTCCTTTCTCCTCCTCCTCTCC
 
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JMFF026B14+           TTTTCCTTCTCTCTCCTTCGCTTGCGTTCCTTCTCCTTATCTCCCCCATCTTTCCTCTTT
JMFF034O17+           TTTTCCTTCTCTCTCCTTCGCTTGCGTTCCTTCTCCTTATCTCCCCCATCTTTCCTCTTT
JMCP007D08+           TTTTCCTTCTCTCTCCTTCGCTTGCGTTCCTTCTCCTTATCTCCCCCATCTTTCCTCTTT
JMFF006N04+           TTTTCCTTCTCTCTCCTTCGCTTGCGTTCCTTCTCCTTATCTCCCCCATCTTTCCTCTTT
                      ____________________________________________________________
consensus             TTTTCCTTCTCTCTCCTTCGCTTGCGTTCCTTCTCCTTATCTCCCCCATCTTTCCTCTTT
 
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JMFF026B14+           CTCTCTTTCCGCCGTCGCCTCCTCTCCTCCTCCCCCTCCGTCGACTCAGAAGCATAAGAA
JMFF034O17+           CTCTCTTTCCGCCGTCGCCTCCTCTCCTCCTCCCCCTCCGTCGACTCAGAAGCATAAGAA
JMCP007D08+           CTCTCTTTCCGCCGTCGCCTCCTCTCCTCCTCCCCCTCCGTCGACTCAGAAGCATAAGAA
JMFF006N04+           CTCTCTTTCCGCCGTCGCCTCCTCTCCTCCTCCCCCTCCGTCGACTCAGAAGCATAAGAA
                      ____________________________________________________________
consensus             CTCTCTTTCCGCCGTCGCCTCCTCTCCTCCTCCCCCTCCGTCGACTCAGAAGCATAAGAA
 
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JMFF026B14+           TCTTTGTCCGAATACGAGTCATCAGACTCCGACGACGATGAATACGAATCTTCGTCGTAA
JMFF034O17+           TCTTTGTCCGAATACGAGTCATCAGACTCCGACGACGATGAATACGAATCTTCGTCGTAA
JMCP007D08+           TCTTTGTCCGAATACGAGTCATCAGACTCCGACGACGATGAATACGAAagTTCGTCGTAA
JMFF006N04+           TCTTTGTCCGAATACGAGTCATCAGACTCCGACGACGATGAATACGAATCTTCGTCGTAA
                      ____________________________________________________________
consensus             TCTTTGTCCGAATACGAGTCATCAGACTCCGACGACGATGAATACGAATCTTCGTCGTAA
 
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JMFF026B14+           TCATCCCGTGACCTTTTCCTCGAACTTCGGCTTCGGCTGCGGCTTCGCTTTCGCTTGCCC
JMFF034O17+           TCATCCCGTGACCTTTTCCTCGAACTTCGGCTTCGGCTGCGGCTTCGCTTTCGCTTGCCC
JMCP007D08+           TCATCCCGTGACCTTTTCCTCGAACTTCGGCTTCGGCTGCGGCTTCGCTTTCGCTTGCCC
JMFF006N04+           TCATCCCGTGACCTTTTCCTCGAACTTCGGCTTCGGCTGCGGCTTCGCTTTCGCTTGCCC
                      ____________________________________________________________
consensus             TCATCCCGTGACCTTTTCCTCGAACTTCGGCTTCGGCTGCGGCTTCGCTTTCGCTTGCCC
 
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JMFF026B14+           TTCTTGCTGTGCCTGCGTCCCTCGGATCGTTTCAACCCGTTTTCATTGTCGGGTTTGGAA
JMFF034O17+           TTCTTGCTGTGCCTGCGTCCCTCGGATCGTTTCAACCCGTTTTCATTGTCGGGTTTGGAA
JMCP007D08+           TTCTTGC                                                     
JMFF006N04+           TTCTTGCTGTGCCTGCGTCCCTCGGATCGTTTCAACCCGTTTTCATTGTCGGGTTTGGAA
                      ____________________________________________________________
consensus             TTCTTGCTGTGCCTGCGTCCCTCGGATCGTTTCAACCCGTTTTCATTGTCGGGTTTGGAA
 
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JMFF026B14+           TCTGAGCTGGTTTCGGACTCGGATTTATCATCAGTCCTGGATTTCGAAGATTTGAGGTCC
JMFF034O17+           TCTGAGCTGGTTTCGGACTCGGATTTATCATCAGTCCTGGATTTCGAAGATTTGAGGTCC
JMFF006N04+           TCTGAGCTGGTTTCGGACTCGGATTTATCATCAGTCCTGGATTTCGAAGATTTGAGGTCC
                      ____________________________________________________________
consensus             TCTGAGCTGGTTTCGGACTCGGATTTATCATCAGTCCTGGATTTCGAAGATTTGAGGTCC
 
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JMFF026B14+           CGCTTAGACGGAGTTCCGTCTTCGTATTCCGGAGTTCTATTTCTATCTCTCGCCATTCCT
JMFF034O17+           CGCTTAGACGGAGTTCCGTCTTCGTATTCCGGAGTTCTATTTCTATCTCTCGCCATTCCT
JMFF006N04+           CGCTTAGACGGAGTTCCGTCTTCGTATTCCGGAGTTCTATTTCTATCTCTCGCCACTCCT
                      ____________________________________________________________
consensus             CGCTTAGACGGAGTTCCGTCTTCGTATTCCGGAGTTCTATTTCTATCTCTCGCCATTCCT