Contig 003071:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002H13Sequence491003071 (8)ref|XP_009599355.1|9e-50PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Nicotiana tomento674005404 (11)gb|AAL16927.1|AF420477_13e-603-hydroxy-3-methylglutaryl CoA reductase, partial [Solanum lycopersicum]
JMFF005J16Sequence471003071 (8)ref|XP_009599355.1|1e-40PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Nicotiana tomento483005404 (11)gb|AAY22199.1|7e-12HMG CoA reductase, partial [Datura inoxia]
JMFF011F20Sequence428003071 (8)ref|XP_009599355.1|5e-40PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Nicotiana tomento675005404 (11)gb|AAL16927.1|AF420477_13e-603-hydroxy-3-methylglutaryl CoA reductase, partial [Solanum lycopersicum]
JMFF022F12Sequence427003071 (8)ref|XP_009599355.1|5e-40PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Nicotiana tomento765005404 (11)ref|XP_004170310.1|4e-83PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like, partial [Cucum
JMFF024A20Sequence421003071 (8)ref|XP_009599355.1|8e-40PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Nicotiana tomento742005404 (11)ref|XP_004170310.1|3e-76PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like, partial [Cucum
JMFF038A22Sequence435003071 (8)ref|XP_009599355.1|1e-40PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Nicotiana tomento685005404 (11)gb|AAL16927.1|AF420477_16e-613-hydroxy-3-methylglutaryl CoA reductase, partial [Solanum lycopersicum]
JMSF034M17Sequence673003071 (8)ref|XP_009599355.1|6e-45PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Nicotiana tomento698005404 (11)ref|XP_004170310.1|2e-69PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like, partial [Cucum
JMSF043J23Sequence710003071 (8)ref|XP_009599355.1|2e-59PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Nicotiana tomento734005404 (11)ref|XP_004170310.1|1e-79PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like, partial [Cucum

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF034M17+ ACGGAGCTGATAATCTC
JMSF043J23+ CGATTCCAACAAATAGGACGGAGTTTTCCCCGCCACAACGGAGNTGATAATCTC
                      ____________________________________________________________
consensus CGATTCCAACAAATAGGACGGAGTTTTCCCCGCCACAACGGAGCTGATAATCTC
 
. : . : . : . : . : . :
JMSF034M17+ CTCGTCCTCNTCAGACCCGTCCGGTGCAATTAAGAGAGCTGGTTTTTCAGCCACGCCGTT
JMSF043J23+ CTCGTCCTCCTCAGACCCGTCCGGTGCAATTAAGAGAGCTGGTTTCTCAGCCACGCCGTT
                      ____________________________________________________________
consensus CTCGTCCTCCTCAGACCCGTCCGGTGCAATTAAGAGAGCTGGTTTTTCAGCCACGCCGTT
 
. : . : . : . : . : . :
JMSF034M17+ GGAGATCTTCGCAGGTTGCTCAGGAACCANTGAGGCAATTCGTCGAACAGGTGGTGTGGG
JMSF043J23+ GGAGATCTTCGCAGGTTGCTCAGGAACCACTGAGGCAATTCGTCGAACAGGTGGTGTGGG
                      ____________________________________________________________
consensus GGAGATCTTCGCAGGTTGCTCAGGAACCACTGAGGCAATTCGTCGAACAGGTGGTGTGGG
 
. : . : . : . : . : . :
JMSF034M17+ TGGGGGAATAGCGCAGCCCAGAGTAGTTGCCGCCGCCGCAGCCGAACAAGCCCCACGCCG
JMFF002H13+ GAACAAGCCCCACGCCG
JMSF043J23+ TGGGGGAATAGCGCAGCCCAGAGTAGTTGCCGCCGCCGCAGCCGAACAAGCCCCACGCCG
                      ____________________________________________________________
consensus TGGGGGAATAGCGCAGCCCAGAGTAGTTGCCGCCGCCGCAGCCGAACAAGCCCCACGCCG
 
. : . : . : . : . : . :
JMSF034M17+ GCTATCCTCTTCCAACAAATACTGCTCATTGCTCTCATCCTCCCCCATCCCACCCCTCCT
JMFF002H13+ GCTATCCTCTTCCAACAAATACTGCTCATTGCTNTCATCCT-CCCCATCCCACCCCTCCT
JMFF022F12+ CCCACCCCTCCT
JMFF011F20+ TCCCACCCCTCCT
JMSF043J23+ GCTATCCTCTTCCAACAAATACTGCTCATTGCTCTCATCCT-CCCCATCCCACCCCTCCT
JMFF038A22+ CCCATCCCACCCCTCNT
JMFF024A20+ T
JMFF005J16+ TTCCAACAAATACTGCTCATTGCTNTCATCCTCCCCCATCCCACCCCTCCT
                      ____________________________________________________________
consensus GCTATCCTCTTCCAACAAATACTGCTCATTGCTCTCATCCTCCCCCATCCCACCCCTCCT
 
. : . : . : . : . : . :
JMSF034M17+ GATTCGCCCTGTACAGAAAAGACTGCACGAACCCGATCCCAAAGAACCCCAGCAGGTAAA
JMFF002H13+ GATTCGCCCTGTACAGAAAAGACTGCACGAACCCGATCCCAAAGAACCCCAGCAGGTAAA
JMFF022F12+ GATTCGCCCTGTACAGAAAAGACTGCACGAACCCGATCCCAAAGAACCCCAGCAGGTAAA
JMFF011F20+ GATTCGCCCTGTACAGAAAAGACTGCACGAACCCGATCCCAAAGAACCCCAGCAGGTAAA
JMSF043J23+ GATTCGCCCTGTACAGAAAAGACTGCACGAACCCGATCCCAAAGAACCCCAGCAGGTAAA
JMFF038A22+ GATTCGCCCTGTACAGAAAAGACTGCACGAACCCGATCCCAAAGAACCCCAGCAGGTAAA
JMFF024A20+ GATTCGCCCTGTACAGAAAAGACTGCACGAACCCGATCCCAAAGAACCCCAGCAGGTAAA
JMFF005J16+ GATTCGCCCTGTACAGAAAAGACTGCACGAACCCGATCCCAAAGAACCCCAGCAGGTAAA
                      ____________________________________________________________
consensus GATTCGCCCTGTACAGAAAAGACTGCACGAACCCGATCCCAAAGAACCCCAGCAGGTAAA
 
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JMSF034M17+ TCACCGAGGCGATCAACGACGCCAACGCAGCCAGCTCCGACAACGTCACCACATGGAGAG
JMFF002H13+ TCACCGAGGCGATCAACGACGCCAACGCAGCCAGCTCCGACAACGTCACCACATGGAGAG
JMFF022F12+ TCACCGAGGCGATCAACGACGCCAACGCAGCCAGCTCCGACAATGTCACCACATGGAGAG
JMFF011F20+ TCACCGAGGCGATCAACGACGCCAACGCAGCCAGCTCCGACAATGTCACCACATGGAGAG
JMSF043J23+ TCACCGAGGCGATCAACGACGCCAACGCAGCCAGCTCCGACAACGTCACCACATGGAGAG
JMFF038A22+ TCACCGAGGCGATCAACGACGCCAACGCAGCCAGCTCCGACAACGTCACCACATGGAGAG
JMFF024A20+ TCACCGAGGCGATCAACGACGCCAACGCAGCCAGCTCCGACAACGTCACCACATGGAGAG
JMFF005J16+ TCACCGAGGCGATCAACGACGCCAACGCAGCCAGCTCCGACAACGTCACCACATGGAGAG
                      ____________________________________________________________
consensus TCACCGAGGCGATCAACGACGCCAACGCAGCCAGCTCCGACAACGTCACCACATGGAGAG
 
. : . : . : . : . : . :
JMSF034M17+ GCGTAGAGTTCCGGATCTTCTCCCTCCACCTCACCAGCAGAAAATACATCACCGTAAAGA
JMFF002H13+ GCGTAGAGTTCCGGATCTTCTCCCTCCACCTCACCAGCAGAAAATACATCACCGTAAAGN
JMFF022F12+ GCGTAGAGTTCCGGATCTTCTCCCTCCACCTCACCAGCAGAAAATACATCACCGTAAAGA
JMFF011F20+ GCGTAGAGTTCCGGATCTTCTCCCTCCACCTCACCAGCAGAAAATACATCACCGTAAAGA
JMSF043J23+ GCGTAGAGTTCCGGATCTTCTCCCTCCACCTCACCAGCAGAAAATACATCACCGTAAAGA
JMFF038A22+ GCGTAGAGTTCCGGATCTTCTCCCTCCACCTCACCAGCAGAAAATACATCACCGTAAAGA
JMFF024A20+ GCGTAGAGTTCCGGATCTTCTCCCTCCACCTCACCAGCAGAAAATACATCACCGTAAAGA
JMFF005J16+ GCGTAGAGTTCCGGATCTTCTCCCTCCACCTCACCAGCAGAAAATACATCACCGTAAAGA
                      ____________________________________________________________
consensus GCGTAGAGTTCCGGATCTTCTCCCTCCACCTCACCAGCAGAAAATACATCACCGTAAAGA
 
. : . : . : . : . : . :
JMSF034M17+ ACATGGTGAAAAACAACCCATTTGTCAAATACAACGGCAGGGGAAGGGCATCCGACGCCT
JMFF002H13+ ACATGGTGAAAAACAACCCATTTGTCAAATACAACGGCAGGGGAAGGGCATCCGACGCCT
JMFF022F12+ ACATGGTGAAAAACAACCCATTTGTCAAATACAACGGCAGGGGAAGGGCATCCGACGCCT
JMFF011F20+ ACATGGTGAAAAACAACCCATTTGTCAAATACAACGGCAGGGGAAGGGCATCCGACGCCT
JMSF043J23+ ACATGGTGAAAAACAACCCATTTGTCAAATACAACGGCAGGGGAAGGGCATCCGACGCCT
JMFF038A22+ ACATGGTGAAAAACAACCCATTTGTCAAATACAACGGCAGGGGAAGGGCATCCGACGCCT
JMFF024A20+ ACATGGTGAAAAACAACCCATTTGTCAAATACAACGGCAGGGGAAGGGCATCCGACGCCT
JMFF005J16+ ACATGGTGAAAAACAACCCATTTGTCAAATACAACGGCAGGGGAAGGGCATCCGACGCCT
                      ____________________________________________________________
consensus ACATGGTGAAAAACAACCCATTTGTCAAATACAACGGCAGGGGAAGGGCATCCGACGCCT
 
. : . : . : . : . : . :
JMSF034M17+ TAGGCGAGGACACTAGAAGATATTGCTGTTTATGAGCCTTAATAGTCTCACACGCCGCCG
JMFF002H13+ TAGGCGAGGACACTAGAAGATATTGCTGTTTATGAGCCTTAATAGTCTCACACGCCGCCG
JMFF022F12+ TAGGCGAGGACACTAGAAGATATTGCTGTTTATGAGCCTTAATAGTCTCACACGCCGCCG
JMFF011F20+ TAGGCGAGGACACTAGAAGATATTGCTGTTTATGAGCCTTAATAGTCTCACACGCCGCCG
JMSF043J23+ TAGGCGAGGACACTAGAAGATATTGCTGTTTATGAGCCTTAATAGTCTCACACGCCGCCG
JMFF038A22+ TAGGCGAGGACACTAGAAGATATTGCTGTTTATGAGCCTTAATAGTCTCACACGCCGCCG
JMFF024A20+ TAGGCGAGGACACTAGAAGATATTGCTGTTTATGAGCCTTAATAGTCTCACACGCCGCCG
JMFF005J16+ TAGGCGAGGACACTAGAAGATATTGCTGTTTATGAGCCTTAATAGTCTCACACGCCGCCG
                      ____________________________________________________________
consensus TAGGCGAGGACACTAGAAGATATTGCTGTTTATGAGCCTTAATAGTCTCACACGCCGCCG
 
. : . : . : . : . : . :
JMSF034M17+ CAGAGCCCTTATTAGGCCGGCAAAGCTGCTTGCTCAGACGCCGGCGAACGTCCATTCTGA
JMFF002H13+ CAGAGCCCTTATTAGGCCGGCAAAGCTGCTTGCTCAGACGCCGGCGAACGTCCATTCTGA
JMFF022F12+ CAGAGCCCTTATTAGGCCGGCAAAGCTGCTTGCTCAGACGCCGGCGAACGTCCATTCTGA
JMFF011F20+ CAGAGCCCTTATTAGGCCGGCAAAGCTGCTTGCTCAGACGCCGGCGAACGTCCATTCTGA
JMSF043J23+ CAGAGCCCTTATTAGGCCGGCAAAGCTGCTTGCTCAGACGCCGGCGAACGTCCATTCTGA
JMFF038A22+ CAGAGCCCTTATTAGGCCGGCAAAGCTGCTTGCTCAGACGCCGGCGAACGTCCATTCTGA
JMFF024A20+ CAGAGCCCTTATTAGGCCGGCAAAGCTGCTTGCTCAGACGCCGGCGAACGTCCATTCTGA
JMFF005J16+ CAGAGCCCTTATTAGGCCGGCAAAGCTGCTTGCTCAGACGCCGGCGAACGTCCATTCTGA
                      ____________________________________________________________
consensus CAGAGCCCTTATTAGGCCGGCAAAGCTGCTTGCTCAGACGCCGGCGAACGTCCATTCTGA
 
. : . : . : . : . : . :
JMSF034M17+ GTGGAGAAAAGCGTGGCGGTTAGATGCCGCCGTTAGAATCTGAATTTGGTTTTAT
JMFF002H13+ GTGGAGAAAAGCGTGGCGGTTAGATGCCGCCGTTAGAATCTGAATTTGGTTTTAT
JMFF022F12+ GTGGAGAAAAGCGTGGCGGTTAGATGCCGCCGTTAGAATCTGAATTTGGTTTTAT
JMFF011F20+ GTGGAGAAAAGCGTGGCGGTTAGATGCCGCCGTTAGAATCTGAATTTGGTTTTAT
JMSF043J23+ GTGGAGAAAAGCGTGGCGGTTAGATGCCGCCGTTAGAATCTGAATTTGGTTTTAT
JMFF038A22+ GTGGAGAAAAGCGTGGCGGTTAGATGCCGCCGTTAGAATCTGAATTTGGTTTTAT
JMFF024A20+ GTGGAGAAAAGCGTGGCGGTTAGATGCCGCCGTTAGAATCTGAATTTGGTTTTAT
JMFF005J16+ GTGGAGAAAAGCGTGGCGGTTAGATGCCGCCGTTAGAATCTGAATTTGGTTTTATGAGAG
                      ____________________________________________________________
consensus GTGGAGAAAAGCGTGGCGGTTAGATGCCGCCGTTAGAATCTGAATTTGGTTTTATGAGAG