Contig 003063:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004H04Sequence605003063 (5)767015889ref|XP_009779606.1|1e-25PREDICTED: putative late blight resistance protein homolog R1B-16 isoform X1 [N
JMFS012H04Sequence642003063 (5)
JMSF044F04Sequence761003063 (5)758003063 (5)
JMSF051I12Sequence610003063 (5)692022675

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF044F04- AAGAGACAAATATTTTTTAGACGAACAAGAAGGGCATTATNTCTATAG
                      ____________________________________________________________
consensus AAGAGACAAATATTTTTTAGACGAACAAGAAGGGCATTATNTCTATAG
 
. : . : . : . : . : . :
rJMSF044F04- ATTGTGTTGCTCATCTTGAATCCACTTTGCAGAAGCCACAAGCTAGCTAGGGAATCCCTA
                      ____________________________________________________________
consensus ATTGTGTTGCTCATCTTGAATCCACTTTGCAGAAGCCACAAGCTAGCTAGGGAATCCCTA
 
. : . : . : . : . : . :
rJMSF044F04- CATTCACTTAATTGAATCCCATCAGCTTAGTCACTCCTTTTTGTTGAATAGCAGTTGTAA
                      ____________________________________________________________
consensus CATTCACTTAATTGAATCCCATCAGCTTAGTCACTCCTTTTTGTTGAATAGCAGTTGTAA
 
. : . : . : . : . : . :
rJMSF044F04- TCATTTGCTCTACAATTGAAGATACTTGAGACTTTTGTGGTCAATTTTGATGGTGAAATG
                      ____________________________________________________________
consensus TCATTTGCTCTACAATTGAAGATACTTGAGACTTTTGTGGTCAATTTTGATGGTGAAATG
 
. : . : . : . : . : . :
rJMSF044F04- TCCATCGTCCCCCTTCCAAGCAAATATGGTCTCCATATTTTCACTTAAGAAATGAGTGAA
JMSF044F04+ CCCTTCCAAGCAAATATGGTCTCCATATTTTCACTTAAGAAATGAGTGAA
                      ____________________________________________________________
consensus TCCATCGTCCCCCTTCCAAGCAAATATGGTCTCCATATTTTCACTTAAGAAATGAGTGAA
 
. : . : . : . : . : . :
rJMSF044F04- ATGGCATCATCCATCAGATCTCTAATCATCCCAGAAGCAGAAACCAAAATATATAACAGA
JMSF044F04+ ATGGCATCATCCATCAGATCTCTAATCATCCCAGAAGCAGAAACCAAAATATATAACAGA
                      ____________________________________________________________
consensus ATGGCATCATCCATCAGATCTCTAATCATCCCAGAAGCAGAAACCAAAATATATAACAGA
 
. : . : . : . : . : . :
rJMSF044F04- GTAGTCACCCTGAACATAGCCTTCAAAATTTGTCTTCAAACAATTTCTCCTTCACCTCTC
JMSF044F04+ GTAGTCACCCTGAACATAGCCTTCAAAATTTGTCTTCAAACAATTTCTCCTTCACCTCTC
                      ____________________________________________________________
consensus GTAGTCACCCTGAACATAGCCTTCAAAATTTGTCTTCAAACAATTTCTCCTTCACCTCTC
 
. : . : . : . : . : . :
rJMSF044F04- TCTTCCACATTCTTTCTCAGATATTTACTCTTTCTGGCTGGAAACAGTAAATTAAGTTAA
JMSF044F04+ TCTTCCACATTCTTTCTCAGATATTTACTCTTTCTGGCTGGAAACAGTAAATTAAGTTAA
JMFS012H04+ GTTAA
                      ____________________________________________________________
consensus TCTTCCACATTCTTTCTCAGATATTTACTCTTTCTGGCTGGAAACAGTAAATTAAGTTAA
 
. : . : . : . : . : . :
rJMSF044F04- AAATTGGTGAATAGACAGCAGGTAGATAGGTAAGGAAATTGTTAGATATGTGAAGAGTCA
JMSF044F04+ AAATTGGTGAATAGACAGCAGGTAGATAGGTAAGGAAATTGTTAGATATGTGAAGAGTCA
JMFS012H04+ AAATTGGTGAATAGACAGCAGGTAGATAGGTAAGGAAATTGTTAGATATGTGAAGAGTCA
JMSF051I12+ GATATGTGAAGAGTCA
JMFF004H04+ GAGTCA
                      ____________________________________________________________
consensus AAATTGGTGAATAGACAGCAGGTAGATAGGTAAGGAAATTGTTAGATATGTGAAGAGTCA
 
. : . : . : . : . : . :
rJMSF044F04- TAGGTATGTGAAGAGTCATAGGAATGTGAAGAGGCATGATAACAGTAGCCTAGCATGTAT
JMSF044F04+ TAGGTATGTGAAGAGTCATAGGAATGTGAAGAGGCATGATAACAGTAGCCTAGCATGTAT
JMFS012H04+ TAGGTATGTGAAGAGTCATAGGAATGTGAAGAGGCATGATAACAGTAGCCTAGCATGTAT
JMSF051I12+ TAGGTANGTGAAGAGTCATAGGAATGTGAAGAGGCATGATAACAGTAGCCTAGCATGTAT
JMFF004H04+ TAGGTATGTGAAGAGTCATAGGAATGTGAAGAGGCATGATAACAGTAGCCTAGCATGTAT
                      ____________________________________________________________
consensus TAGGTATGTGAAGAGTCATAGGAATGTGAAGAGGCATGATAACAGTAGCCTAGCATGTAT
 
. : . : . : . : . : . :
rJMSF044F04- ATATATGCCAGTGTGGTTGTGAAGTTAAAAAGGAAGAAGTAATAGATATATAGAGAGTTT
JMSF044F04+ ATATATGCCAGTGTGGTTGTGAAGTTAAAAAGGAAGAAGTAATAGATATATAGAGAGTTT
JMFS012H04+ ATATATGCCAGTGTGGTTGTGAAGTTAAAAAGGAAGAAGTAATAGATATATAGAGAGTTT
JMSF051I12+ ATATATGCCAGTGTGGTTGTGAAGTTAAAAAGGAAGAAGTAATAGATATATAGAGAGTTT
JMFF004H04+ ATATATGCCAGTGTGGTTGTGAAGTTAAAAAGGAAGAAGTAATAGATATATAGAGAGTTT
                      ____________________________________________________________
consensus ATATATGCCAGTGTGGTTGTGAAGTTAAAAAGGAAGAAGTAATAGATATATAGAGAGTTT
 
. : . : . : . : . : . :
rJMSF044F04- TTCTTGATTAACACGGTATCAGAGCCCAGTGGGCATTGATCGGCGCGAGGCGACTTCACT
JMSF044F04+ TTCTTGATTAACACGGTATCAGAGCCCAGTGGGCATTGATCGGCGCGAGGCGACTTCACT
JMFS012H04+ TTCTTGATTAACACGGTATCAGAGCCCAGTGGGCATTGATCGGCGCGAGGCGACTTCACT
JMSF051I12+ TTCTTGATTAACACGGTATCAGAGCCCAGTGGGCATTGATCGGCGCGAGGCGACTTCACT
JMFF004H04+ TTCTTGATTAACACGGTATCAGAGCCCAGTGGGCATTGATCGGCGCGAGGCGACTTCACT
                      ____________________________________________________________
consensus TTCTTGATTAACACGGTATCAGAGCCCAGTGGGCATTGATCGGCGCGAGGCGACTTCACT
 
. : . : . : . : . : . :
rJMSF044F04- GGCAGGAGTTTCGCGGCGAAACGGAGCCTCCACGCGTCGCCGCAATCCAG
JMSF044F04+ GGCAGGAGTTTCGCGGCG-AACGGAGCCTCCACGCGTCGCCGCAATCCAGAGGTCCCGAC
JMFS012H04+ GGCAGGAGTTTCGCGGCG-AACGGAGCCTCCACGCGTCGCCGCAATCCAGAGGTCCCGAC
JMSF051I12+ GGCAGGAGTTTCGCGGCG-AACGGAGCCTCCACGCGTCGCCGCAATCCAGAGGTCCCGAC
JMFF004H04+ GGCAGGAGTTTCGCGGCG-AACGGAGCCTCCACGCGTCGCCGCAATCCAGAGGTCCCGAC
                      ____________________________________________________________
consensus GGCAGGAGTTTCGCGGCG-AACGGAGCCTCCACGCGTCGCCGCAATCCAGAGGTCCCGAC
 
. : . : . : . : . : . :
JMSF044F04+ GCCACGCGCCGGCACGTGTGCTCTGTTCCAGCGTCCTCTCCGGTCAAGGCGAGTACTGGC
JMFS012H04+ GCCACGCGCCGGCACGTGTGCTCTGTTCCAGCGTCCTCTCCGGTCAAGGCGAGTACTGGC
JMSF051I12+ GCCACGCGCCGGCACGTGTGCTCTGTTCCAGCGTCCTCTCCGGTCAAGGCGAGTACTGGC
JMFF004H04+ GCCACGCGCCGGCACGTGTGCTCTGTTCCAGCGTCCTCTCCGGTCAAGGCGAGTACTGGC
                      ____________________________________________________________
consensus GCCACGCGCCGGCACGTGTGCTCTGTTCCAGCGTCCTCTCCGGTCAAGGCGAGTACTGGC
 
. : . : . : . : . : . :
JMSF044F04+ AGGCTCGTCTCTGTGAGCCCAGTAGGTCTAGGGTGGTGGTGGAGGCGCATGAGGCCATTT
JMFS012H04+ AGGCTCGTCTCTGTGAGCCCAGTAGGTCTAGGGTGGTGGTGGAGGCGCATGAGGCCATTT
JMSF051I12+ AGGCTCGTCTCTGTGAGCCCAGTAGGTCTAGGGTGGTGGTGGAGGCGCATGAGGCCATTT
JMFF004H04+ AGGCTCGTCTCTGTGAGCCCAGTAGGTCTAGGGTGGTGGTGGAGGCGCATGAGGCCATTT
                      ____________________________________________________________
consensus AGGCTCGTCTCTGTGAGCCCAGTAGGTCTAGGGTGGTGGTGGAGGCGCATGAGGCCATTT
 
. : . : . : . : . : . :
JMSF044F04+ CCGGCAAAATATTGTCTTTTTCGTCTCGTTTTGGTGAGCCCATTTCGTCAAGGTATGGTT
JMFS012H04+ CCGGCAAAATATTGTCTTTTTCGTCTCGTTTTGGTGAGCCCATTTCGTCAAGGTATGGTT
JMSF051I12+ CCGGCAAAATATNGTCTTTTTCGTCTCGTTTTGGTGAGCCCATTTNGTCAAGGTATGGTT
JMFF004H04+ CCGGCAAAATATTGTCTTTTTCGTCTCGTTTTGGTGAGCCCATTTCGTCAAGGTATGGTT
                      ____________________________________________________________
consensus CCGGCAAAATATTGTCTTTTTCGTCTCGTTTTGGTGAGCCCATTTCGTCAAGGTATGGTT
 
. : . : . : . : . : . :
JMSF044F04+ TATGATGTGTTGGAGTATAGATTGTTGGTGGCATGTTGTTTTAGCTCGGTT
JMFS012H04+ TATGATGTGTTGGAGTATAGATTGTTGGTGGCATGTTGTTTTAGCTCGGTTGAGGACCCG
JMSF051I12+ TATGATGTGTTGGANTATAGATTGTTGGTGGCATGTTGTTTTAGCTCGGTTGAGGACCCG
JMFF004H04+ TATGATGTGTTGGAGTATAGATTGTTGGTGGCATGTTGTTTTAGCTCGGTTGAGGACCCG
                      ____________________________________________________________
consensus TATGATGTGTTGGAGTATAGATTGTTGGTGGCATGTTGTTTTAGCTCGGTTGAGGACCCG
 
. : . : . : . : . : . :
JMFS012H04+ GCAGTGGGTATTTTCCAGCAGCTGATAACGACGACGCCGGGTTAAGTGGTTAGTGACGGC
JMSF051I12+ GCAGTGGGTATTTTCCAGCAGCTGATAACGACGACGCCGGGTTAAGTGG---GTGACGGC
JMFF004H04+ GCAGTGGGTATTTTCCAGCAGCTGATAACGACGACGCCGGGTTAAGTGGTTAGTGACGGC
                      ____________________________________________________________
consensus GCAGTGGGTATTTTCCAGCAGCTGATAACGACGACGCCGGGTTAAGTGGTTAGTGACGGC
 
. : . : . : . : . : . :
JMFS012H04+ CGCCAGCGACTATGGTCAGTAGGTGTGTGTTGCTGTTG
JMSF051I12+ CGCCAGCGACTATGGTCAGTAGGTGTGTGTTGCTGTTGGGATGGTCAGTAGGTTTGT
JMFF004H04+ CGCCAGCGACTATGGTCAGTAGGTGTGTGTTGCTGTTGGGATGGTCAGTAGGTTTGTGTT
                      ____________________________________________________________
consensus CGCCAGCGACTATGGTCAGTAGGTGTGTGTTGCTGTTGGGATGGTCAGTAGGTTTGTGTT