Contig 003061:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004C12Sequence561003061 (2)ref|XP_004235299.1|2e-15PREDICTED: RNA polymerase sigma factor sigA [Solanum lycopersicum]765014804ref|XP_010662046.1|1e-89PREDICTED: RNA polymerase sigma factor sigA isoform X2 [Vitis vinifera]
JMSF005G04Sequence354003061 (2)

Alignment

This contig is upended


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JMFF004C12+                                                  TCTTAGCCATGACAGTACTGT
                      ____________________________________________________________
consensus                                                    TCTTAGCCATGACAGTACTGT
 
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JMFF004C12+           TCACAGACAGAACTTGATGGCATGGTAAGGTGTGATCGCTGCCACATGACAGTTTTTCAC
                      ____________________________________________________________
consensus             TCACAGACAGAACTTGATGGCATGGTAAGGTGTGATCGCTGCCACATGACAGTTTTTCAC
 
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JMFF004C12+           CAAAATCAGAATAATAAAAGGAAGAGCAGAGGAGCCTTTTTCCAGCACTAAGTCCAACAA
                      ____________________________________________________________
consensus             CAAAATCAGAATAATAAAAGGAAGAGCAGAGGAGCCTTTTTCCAGCACTAAGTCCAACAA
 
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JMFF004C12+           TGGTGGCAGTGACCATCATTTAGGCACAGTATCTAAAAAGGAAGCAGAACCACAATCATG
                      ____________________________________________________________
consensus             TGGTGGCAGTGACCATCATTTAGGCACAGTATCTAAAAAGGAAGCAGAACCACAATCATG
 
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JMFF004C12+           CCACTCAATGAGAGGACGAACTTCTCCACTGCCAGAAGAAATTTCTACTTGACCACTATG
                      ____________________________________________________________
consensus             CCACTCAATGAGAGGACGAACTTCTCCACTGCCAGAAGAAATTTCTACTTGACCACTATG
 
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JMFF004C12+           CTAAACTCCTGGTAGACAAGATACCCCTTCAACGGAGACAGAGCAGCAGCAACAACAACA
                      ____________________________________________________________
consensus             CTAAACTCCTGGTAGACAAGATACCCCTTCAACGGAGACAGAGCAGCAGCAACAACAACA
 
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JMSF005G04+                                   CTGAACTTTCCGGCGACGATTGACGACAGAAGAACG
JMFF004C12+           ACAGAAGATGAACTGAAATACAGTCTGAACTTTCCGGCGACGATTGACGACAGAAGAACG
                      ____________________________________________________________
consensus             ACAGAAGATGAACTGAAATACAGTCTGAACTTTCCGGCGACGATTGACGACAGAAGAACG
 
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JMSF005G04+           ATGTGCGAGTGCCAAGTGTGAGCTCCAAATCCAATGCTCTCCCACAGTCCACAGAGTGCA
JMFF004C12+           ATGTGCGAGTGCCAAGTGTGAGCTCCAAATCCAATGCTCTCCCACAGTCCACAGAGTGCA
                      ____________________________________________________________
consensus             ATGTGCGAGTGCCAAGTGTGAGCTCCAAATCCAATGCTCTCCCACAGTCCACAGAGTGCA
 
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JMSF005G04+           GAAAACAAGGCCGTTCGTTGCTTCGCTGAGTCCGTT                        
JMFF004C12+           GAAAACAAGGCCGTTCGTTGCTTCGCTGAGTCCGTTGTAACTGTATCTCTCCTACCATTT
                      ____________________________________________________________
consensus             GAAAACAAGGCCGTTCGTTGCTTCGCTGAGTCCGTTGTAACTGTATCTCTCCTACCATTT
 
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JMFF004C12+           TTTTAAATTTATCTTTTTCTTTATCATATTTTTTGCTTTTTCTTTTCTTTTTTTCTCCCT
                      ____________________________________________________________
consensus             TTTTAAATTTATCTTTTTCTTTATCATATTTTTTGCTTTTTCTTTTCTTTTTTTCTCCCT