Contig 003054:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003E12Sequence523003054 (10)ref|XP_008370564.1|9e-05PREDICTED: cell wall / vacuolar inhibitor of fructosidase 1-like [Malus domesti
JMFF013L13Sequence530003054 (10)ref|XP_008370564.1|7e-05PREDICTED: cell wall / vacuolar inhibitor of fructosidase 1-like [Malus domesti485003054 (10)ref|XP_008370564.1|7e-05PREDICTED: cell wall / vacuolar inhibitor of fructosidase 1-like [Malus domesti
JMFF049G18Sequence513003054 (10)ref|XP_008370564.1|9e-05PREDICTED: cell wall / vacuolar inhibitor of fructosidase 1-like [Malus domesti513003054 (10)ref|XP_008370564.1|9e-05PREDICTED: cell wall / vacuolar inhibitor of fructosidase 1-like [Malus domesti
JMFF051D12Sequence492003054 (10)ref|XP_008370564.1|8e-05PREDICTED: cell wall / vacuolar inhibitor of fructosidase 1-like [Malus domesti544003054 (10)ref|XP_008370564.1|2e-04PREDICTED: cell wall / vacuolar inhibitor of fructosidase 1-like [Malus domesti
JMFS007B09Sequence501003054 (10)ref|XP_008370564.1|1e-04PREDICTED: cell wall / vacuolar inhibitor of fructosidase 1-like [Malus domesti
JMFS018E05Sequence501003054 (10)ref|XP_008370564.1|1e-04PREDICTED: cell wall / vacuolar inhibitor of fructosidase 1-like [Malus domesti
JMFS043H05Sequence494003054 (10)ref|XP_008370564.1|9e-05PREDICTED: cell wall / vacuolar inhibitor of fructosidase 1-like [Malus domesti

Alignment

This contig is upended


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rJMFF051D12- CCTTATGGCGGATCACCCTGG
                      ____________________________________________________________
consensus CCTTATGGCGGATCACCCTGG
 
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rJMFF051D12- AGAGTTTTTTTTTTTTTTTTGATGTTAAGAACACAAGCTTAATCACATTTTATTGGATTT
JMFF013L13+ TTAAGAACACAAGCTTAATCACATTTTATTGGATTT
rJMFF049G18- AAGAACACAAGCTTAATCACATTTTATTGGATTT
JMFF049G18+ AAGAACACAAGCTTAATCACATTTTATTGGATTT
JMFS018E05+ AAGAACACAAGCTTAATCACATTTTATTGGATTT
JMFS043H05+ AGAACACAAGCTTAATCACATTTTATTGGATTT
JMFS007B09+ AAGAACACAAGCTTAATCACATTTTATTGGATTT
rJMFF013L13- GGATTT
JMFF003E12+ TTAAGAACACAAGCTTAATCACATTTTATTGGATTT
                      ____________________________________________________________
consensus AGAGTTTTTTTTTTTTTTTTGATGTTAAGAACACAAGCTTAATCACATTTTATTGGATTT
 
. : . : . : . : . : . :
rJMFF051D12- ATTAAAGCATTATTCCAGTTCTAATCAGTCCTTAATGACGTTAAGAACATCCACAG-AAA
JMFF013L13+ ATTAAAGCATTATTCCAGTTCTAATCAGTCCTTAATGACGTTAAGAACATCCACAGAAAA
rJMFF049G18- ATTAAAGCATTATTCCAGTTCTAATCAGTCCTTAATGACGTTAAGAACATCCACAG-AAA
JMFF049G18+ ATTAAAGCATTATTCCAGTTCTAATCAGTCCTTAATGACGTTAAGAACATCCACAG-AAA
JMFS018E05+ ATTAAAGCATTATTCCAGTTCTAATCAGTCCTTAATGACGTTAAGAACATCCACAG-AAA
JMFS043H05+ ATTAAAGCATTATTCCAGTTCTAATCAGTCCTTAATGACGTTAAGAACATCCACAG-AAA
JMFS007B09+ ATTAAAGCATTATTCCAGTTCTAATCAGTCCTTAATGACGTTAAGAACATCCACAG-AAA
rJMFF013L13- ATTAAAGCATTATTCCAGTTCTAATCAGTCCTTAATGACGTTAAGAACATCCACAG-AAA
JMFF051D12+ CATTATTCCAGTTCTAATCAGTCCTTAATGACGTTAAGAACATCCACAG-AAA
JMFF003E12+ ATTAAAGCATTATTCCAGTTCTAATCAGTCCTTAATGACGTTAAGAACATCCACAG-AAA
                      ____________________________________________________________
consensus ATTAAAGCATTATTCCAGTTCTAATCAGTCCTTAATGACGTTAAGAACATCCACAG-AAA
 
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rJMFF051D12- TACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGGAACTACATCATTCACTC
JMFF013L13+ TACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGGAACTACATCATTCACTC
rJMFF049G18- TACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGGAACTACATCATTCACTC
JMFF049G18+ TACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGGAACTACATCATTCACTC
JMFS018E05+ TACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGGAACTACATCATTCACTC
JMFS043H05+ TACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGGAACTACATCATTCACTC
JMFS007B09+ TACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGGAACTACATCATTCACTC
rJMFF013L13- TACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGGAACTACATCATTCACTC
JMFF051D12+ TACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGGAACTACATCATTCACTC
JMFF003E12+ TACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGGAACTACATCATTCACTC
                      ____________________________________________________________
consensus TACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGGAACTACATCATTCACTC
 
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rJMFF051D12- TATATTTAACCGACGGCGCATGATGTTTGGTCGTCAACTTCTCTATGGCATCTTCACCGC
JMFF013L13+ TATATTTAACCGACGGCGCATGATGTTTGGTCGTCAACTTCTCTATGGCATCTTCACCGC
rJMFF049G18- TATATTTAACCGACGGCGCATGATGTTTGGTCGTCAACTTCTCTATGGCATCTTCACCGC
JMFF049G18+ TATATTTAACCGACGGCGCATGATGTTTGGTCGTCAACTTCTCTATGGCATCTTCACCGC
JMFS018E05+ TATATTTAACCGACGGCGCATGATGTTTGGTCGTCAACTTCTCTATGGCATCTTCACCGC
JMFS043H05+ TATATTTAACCGACGGCGCATGATGTTTGGTCGTCAACTTCTCTATGGCATCTTCACCGC
JMFS007B09+ TATATTTAACCGACGGCGCATGATGTTTGGTCGTCAACTTCTCTATGGCATCTTCACCGC
rJMFF013L13- TATATTTAACCGACGGCGCATGATGTTTGGTCGTCAACTTCTCTATGGCATCTTCACCGC
JMFF051D12+ TATATTTAACCGACGGCGCATGATGTTTGGTCGTCAACTTCTCTATGGCATCTTCACCGC
JMFF003E12+ TATATTTAACCGACGGCGCATGATGTTTGGTCGTCAACTTCTCTATGGCATCTTCACCGC
                      ____________________________________________________________
consensus TATATTTAACCGACGGCGCATGATGTTTGGTCGTCAACTTCTCTATGGCATCTTCACCGC
 
. : . : . : . : . : . :
rJMFF051D12- CGCCGCCGCCGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCACCTTTCCTTCAGATCAT
JMFF013L13+ CGCCGCCGCCGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCACCTTTCCTTCAGATCAT
rJMFF049G18- CGCCGCCGCCGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCACCTTTCCTTCAGATCAT
JMFF049G18+ CGCCGCCGCCGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCACCTTTCCTTCAGATCAT
JMFS018E05+ CGCCGCCGCCGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCACCTTTCCTTCAGATCAT
JMFS043H05+ CGCCGCCGCCGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCACCTTTCCTTCAGATCAT
JMFS007B09+ CGCCGCCGCCGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCACCTTTCCTTCAGATCAT
rJMFF013L13- CGCCGCCGCCGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCACCTTTCCTTCAGATCAT
JMFF051D12+ CGCCGCCGCCGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCACCTTTCCTTCAGATCAT
JMFF003E12+ CGCCGCCGCCGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCACCTTTCCTTCAGATCAT
                      ____________________________________________________________
consensus CGCCGCCGCCGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCACCTTTCCTTCAGATCAT
 
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rJMFF051D12- CAATCACTGAAACTGCTTTTTCGAGGACGATTATGCTAAACACTTTCACGTCGCCATCGG
JMFF013L13+ CAATCACTGAAACTGCTTTTTCGAGGACGATTATGCTAAACACTTTCACGTCGCCATCGG
rJMFF049G18- CAATCACTGAAACTGCTTTTTCGAGGACGATTATGCTAAACACTTTCACGTCGCCATCGG
JMFF049G18+ CAATCACTGAAACTGCTTTTTCGAGGACGATTATGCTAAACACTTTCACGTCGCCATCGG
JMFS018E05+ CAATCACTGAAACTGCTTTTTCGAGGACGATTATGCTAAACACTTTCACGTCGCCATCGG
JMFS043H05+ CAATCACTGAAACTGCTTTTTCGAGGACGATTATGCTAAACACTTTCACGTCGCCATCGG
JMFS007B09+ CAATCACTGAAACTGCTTTTTCGAGGACGATTATGCTAAACACTTTCACGTCGCCATCGG
rJMFF013L13- CAATCACTGAAACTGCTTTTTCGAGGACGATTATGCTAAACACTTTCACGTCGCCATCGG
JMFF051D12+ CAATCACTGAAACTGCTTTTTCGAGGACGATTATGCTAAACACTTTCACGTCGCCATCGG
JMFF003E12+ CAATCACTGAAACTGCTTTTTCGAGGACGATTATGCTAAACACTTTCACGTCGCCATCGG
                      ____________________________________________________________
consensus CAATCACTGAAACTGCTTTTTCGAGGACGATTATGCTAAACACTTTCACGTCGCCATCGG
 
. : . : . : . : . : . :
rJMFF051D12- TGCTGCGGGGATCGGATTCTATGACGGAAACGCAGAGATCCGGCGCTTGGGTCTCCGCGC
JMFF013L13+ TGCTGCGGGGATCGGATTCTATGACGGAAACGCAGAGATCCGGCGCTTGGGTCTCCGCGC
rJMFF049G18- TGCTGCGGGGATCGGATTCTATGACGGAAACGCAGAGATCCGGCGCTTGGGTCTCCGCGC
JMFF049G18+ TGCTGCGGGGATCGGATTCTATGACGGAAACGCAGAGATCCGGCGCTTGGGTCTCCGCGC
JMFS018E05+ TGCTGCGGGGATCGGATTCTATGACGGAAACGCAGAGATCCGGCGCTTGGGTCTCCGCGC
JMFS043H05+ TGCTGCGGGGATCGGATTCTATGACGGAAACGCAGAGATCCGGCGCTTGGGTCTCCGCGC
JMFS007B09+ TGCTGCGGGGATCGGATTCTATGACGGAAACGCAGAGATCCGGCGCTTGGGTCTCCGCGC
rJMFF013L13- TGCTGCGGGGATCGGATTCTATGACGGAAACGCAGAGATCCGGCGCTTGGGTCTCCGCGC
JMFF051D12+ TGCTGCGGGGATCGGATTCTATGACGGAAACGCAGAGATCCGGCGCTTGGGTCTCCGCGC
JMFF003E12+ TGCTGCGGGGATCGGATTCTATGACGGAAACGCAGAGATCCGGCGCTTGGGTCTCCGCGC
                      ____________________________________________________________
consensus TGCTGCGGGGATCGGATTCTATGACGGAAACGCAGAGATCCGGCGCTTGGGTCTCCGCGC
 
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rJMFF051D12- AAGCGGTCTGGATTACTTGGTTGCGGTCGTCTGCGGCGGCGAACAGAACGGTGGTGTATA
JMFF013L13+ AAGCGGTCTGGATTACTTGGTTGCGGTCGTCTGCGGCGGCGAACAGAACGGTGGTGTATA
rJMFF049G18- AAGCGGTCTGGATTACTTGGTTGCGGTCGTCTGCGGCGGCGAACAGAACGGTGGTGTATA
JMFF049G18+ AAGCGGTCTGGATTACTTGGTTGCGGTCGTCTGCGGCGGCGAACAGAACGGTGGTGTATA
JMFS018E05+ AAGCGGTCTGGATTACTTGGTTGCGGTCGTCTGCGGCGGCGAACAGAACGGTGGTGTATA
JMFS043H05+ AAGCGGTCTGGATTACTTGGTTGCGGTCGTCTGCGGCGGCGAACAGAACGGTGGTGTATA
JMFS007B09+ AAGCGGTCTGGATTACTTGGTTGCGGTCGTCTGCGGCGGCGAACAGAACGGTGGTGTATA
rJMFF013L13- AAGCGGTCTGGATTACTTGGTTGCGGTCGTCTGCGGCGGCGAACAGAACGGTGGTGTATA
JMFF051D12+ AAGCGGTCTGGATTACTTGGTTGCGGTCGTCTGCGGCGGCGAACAGAACGGTGGTGTATA
JMFF003E12+ AAGCGGTCTGGATTACTTGGTTGCGGTCGTCTGCGGCGGCGAACAGAACGGTGGTGTATA
                      ____________________________________________________________
consensus AAGCGGTCTGGATTACTTGGTTGCGGTCGTCTGCGGCGGCGAACAGAACGGTGGTGTATA
 
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rJMFF051D12- GGAGGAAGGAGAGAAGAAGCAAAACGGAAGGCTTCATTTTGGTT
JMFF013L13+ GGAGGAAGGAGAGAAGAGCAAAAACGGAAGGCTTCATTTTGGTTGTGTGTTTGGAGTGGC
rJMFF049G18- GGAGGAAGGAGAGAAGAGCAAAAACGGAAGGCTTCATTTTGGTTGTGTGTTTGGAGTGGC
JMFF049G18+ GGAGGAAGGAGAGAAGAGCAAAAACGGAAGGCTTCATTTTGGTTGTGTGTTTGGAGTGGC
JMFS018E05+ GGAGGAAGGAGAGAAGAGCAAAAACGGAAGGCTTCATTTTGGTTGTGT
JMFS043H05+ GGAGGAAGGAGAGAAGAGCAAAAACGGAAGGCTTCATTTTGG
JMFS007B09+ GGAGGAAGGAGAGAAGAGCAAAAACGGAAGGCTTCATTTTGGTTGTGT
rJMFF013L13- GGAGGAAGGAGAGAAGAGCAAAAACGGAAGGCTTCATTTTGGTTGTGTGTTTGGAGTGGC
JMFF051D12+ GGAGGAAGGAGAGAAGAGCAAAAACGGAAGGCTTCATTTTGGTTGTGTGTTTGGAGTGGC
JMFF003E12+ GGAGGAAGGAGAGAAGAGCAAAAACGGAAGGCTTCATTTTGGTTGTGTGTTTGGAGTGGC
                      ____________________________________________________________
consensus GGAGGAAGGAGAGAAGAGCAAAAACGGAAGGCTTCATTTTGGTTGTGTGTTTGGAGTGGC