Contig 003049:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034F15+           TTTCTCATAGCTATTGCAACGAAAATATTACACGCCAAAGGAATAACAAGTGTGAAAACC
                      ____________________________________________________________
consensus             TTTCTCATAGCTATTGCAACGAAAATATTACACGCCAAAGGAATAACAAGTGTGAAAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034F15+           GCTAAGTACCAATGCTTTCTTCCTACCTTTCTTAAAACCGTAACATCTGTCTTCACCCCA
JMFS033F08+                  ACCAATGCTTTCTTCCTACCTTCTTTAAAACCGTAACATCTGTCTTCACCCCA
                      ____________________________________________________________
consensus             GCTAAGTACCAATGCTTTCTTCCTACCTTTTTTAAAACCGTAACATCTGTCTTCACCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034F15+           GCTAGGAAGAAGAAATAAACCGATCCAAGAAGCCCTATATTTCTTACAATATTTTGAGAT
JMFS033F08+           GCTAGGAAGAAGAAATAAACCGATCCAAGAAGCCCTATATTTCTTACAATATTTTGAGAT
                      ____________________________________________________________
consensus             GCTAGGAAGAAGAAATAAACCGATCCAAGAAGCCCTATATTTCTTACAATATTTTGAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034F15+           CTATTTGTTAAAAACTTTGTCCGGAATATCTTGATGCGGCTCAGAGCCGATGGCCCTATA
JMFS033F08+           CTATTTGTTAAAAACTTTGTCCGGAATATCTTGATGCGGCTCAGAGCCGATGGCCCTATA
                      ____________________________________________________________
consensus             CTATTTGTTAAAAACTTTGTCCGGAATATCTTGATGCGGCTCAGAGCCGATGGCCCTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034F15+           ATCACACCACCTAGGATTTCGGCGATGATTCGGGGCTGGCGGAGTGGCCTGAGAAGAAGG
JMFS033F08+           ATCACACCACCTAGGATTTCGGCGATGATTCGGGGCTGGCGGAGTGGCCTGAGAAGAAGG
                      ____________________________________________________________
consensus             ATCACACCACCTAGGATTTCGGCGATGATTCGGGGCTGGCGGAGTGGCCTGAGAAGAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034F15+           CGAAGGACGAGCGTGATCATCATGAACAAAGAAAGCTGTGAATAAAATAGGGGCTGGCTG
JMFS033F08+           CGAAGGACGAGCGTGATCATCATGAACAAAGAAAGCTGTGAATAAAATAGGGGCTGGCTG
                      ____________________________________________________________
consensus             CGAAGGACGAGCGTGATCATCATGAACAAAGAAAGCTGTGAATAAAATAGGGGCTGGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034F15+           TGTTGAAAAGGGTTATGGCCATAGAAGACGCTGTGGTGGAGGTTCTTTATAGTCAGCGGT
JMFS033F08+           TGTTGAAAAGGGTTATGGCCATAGAAGACGCTGTGGTGGAGGTTCTTTATAGTCAGCGGT
JMFF002L16+               GAAAAGGGTTATGGCCATAGAAGACGCTGTGGTGGAGGTTCTTTATAGTCAGCGGT
                      ____________________________________________________________
consensus             TGTTGAAAAGGGTTATGGCCATAGAAGACGCTGTGGTGGAGGTTCTTTATAGTCAGCGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034F15+           TCACATACCATGAATCCCTTCTTCAGCAGCTCGCTTTGAACCGCCGGTGAGAAGCTCGTG
JMFS033F08+           TCACATACCATGAATCCCTTCTTCAGCAGCTCGCTTTGAACCGCCGGTGAGAAGCTCGTG
JMFF002L16+           TCACATACCATGAATCCCTTCTTCAGCAGCTCGCTTTGAACCGCCGGTGAGAAGCTCGTG
                      ____________________________________________________________
consensus             TCACATACCATGAATCCCTTCTTCAGCAGCTCGCTTTGAACCGCCGGTGAGAAGCTCGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034F15+           TTCACCATTGCTCACTGCCTCGCTCCCTATGAGGAATTGAAGAATGAATCTAAGCTAAGC
JMFS033F08+           TTCACCATTGCTCACTGCCTCGCTCCCTATGAGGAATTGAAGAATGAATCTAAGCTAAGC
JMFF002L16+           TTCACCATTGCTCACTGCCTCGCTCCCTATGAGGAATTGAAGAATGAATCTAAGCTAAGC
                      ____________________________________________________________
consensus             TTCACCATTGCTCACTGCCTCGCTCCCTATGAGGAATTGAAGAATGAATCTAAGCTAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034F15+           TATGGAGTCCCCTGCTAGCGTAGCTACGCTGTTACGTTCATCAACATCTCATCCACAGAA
JMFS033F08+           TATGGAGTCCCCTGCTAGCGTAGCTACGCTGTTACGTTCATCAACATCTCATCCACAGAA
JMFF002L16+           TATGGAGTCCCCTGCTAGCGTAGCTACGCTGTTACGTTCATCAACATCTCATCCACAGAA
                      ____________________________________________________________
consensus             TATGGAGTCCCCTGCTAGCGTAGCTACGCTGTTACGTTCATCAACATCTCATCCACAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF034F15+           CAGACACCTC                                                  
JMFS033F08+           CAGACACCTCTAGGGATTGGAAGAGAGAGAAAACCCTAAAAATATAATTTCAATTTTTTG
JMFF002L16+           CAGACACCTCTAGGGATTGGAAGAGAGAGAAAACCCTAAAAATATAATTTCAATTTTTTG
                      ____________________________________________________________
consensus             CAGACACCTCTAGGGATTGGAAGAGAGAGAAAACCCTAAAAATATAATTTCAATTTTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS033F08+           TGCAAATTCTCCCACGATTGGACGGACTGGAGCGAAACGCTCTGCTTTGCTTTCA     
JMFF002L16+           TGCAAATTCTCCCACGATTGGACGGACTGGAGCGAAACGCTCTGCTTTGCTTTCACCCCT
                      ____________________________________________________________
consensus             TGCAAATTCTCCCACGATTGGACGGACTGGAGCGAAACGCTCTGCTTTGCTTTCACCCCT