Contig 003047:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001O09Sequence474003047 (3)emb|CDP08772.1|2e-10unnamed protein product [Coffea canephora]737003543 (6)ref|XP_009767889.1|5e-106PREDICTED: probable serine/threonine-protein kinase At1g01540 [Nicotiana sylves
JMFF040J21Sequence476003047 (3)emb|CDP08772.1|3e-11unnamed protein product [Coffea canephora]722003543 (6)ref|XP_009767889.1|1e-95PREDICTED: probable serine/threonine-protein kinase At1g01540 [Nicotiana sylves
JMSF002M15Sequence216003047 (3)690018096ref|XP_006356453.1|1e-11PREDICTED: TMV resistance protein N-like [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF040J21+              GCTCCAACAAAGATCCCAATCACCACCCATAGCTTCAGTCCAAAAATCGAAGTCGGC
JMSF002M15+                                                                     GC
JMFF001O09+                 CCAACAAAGATCCCAATCACCACCCATAGCTTCAGTCCAAAAATCGAAGTCGGC
                      ____________________________________________________________
consensus                GCTCCAACAAAGATCCCAATCACCACCCATAGCTTCAGTCCAAAAATCGAAGTCGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF040J21+           TTCGAAAGCTCACTGTTCACAAACGCCGCATCGTACACCGACATCTTCACCTAAAACACA
JMSF002M15+           TTCGAAAGCTCACTGTTCACAAACGCCGCATCGTACACCGGCATCTTCACCTAAAACACA
JMFF001O09+           TTCGAAAGCTCACTGTTCACAAACGCCGCATCGTACACCGACATCTTCACCTAAAACACA
                      ____________________________________________________________
consensus             TTCGAAAGCTCACTGTTCACAAACGCCGCATCGTACACCGACATCTTCACCTAAAACACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF040J21+           CAGCCCACACCCCACTCCCTCTCTGCGAATGCATGTGTATTCAATCACTCCAATTCACTC
JMSF002M15+           CAGCGAACACCCCACTCC                                          
JMFF001O09+           CAGCCCACACCCCACTCCCTCTCTGCGAATGCATGTGTATTCAATCACTCCAATTCACTC
                      ____________________________________________________________
consensus             CAGCCCACACCCCACTCCCTCTCTGCGAATGCATGTGTATTCAATCACTCCAATTCACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF040J21+           TCTACTCCTCTTCACTGTGCCTCCCCCTCTACACATATCCGTCCACGGAGATTCATCCTC
JMFF001O09+           TCTACTCCTCTTCACTGTGCCTCCCCCTCTACACATATCCGTCCACGGAGATTCATCCTC
                      ____________________________________________________________
consensus             TCTACTCCTCTTCACTGTGCCTCCCCCTCTACACATATCCGTCCACGGAGATTCATCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF040J21+           CCTGCGTATCCACCCAATTAATTACCGTATAACTGACGGATCGATTTACGGTATCAAATG
JMFF001O09+           CCTGCGTATCCACCCAATTAATTACCGTATAACTGACGGATCGATTTACGGTATCAAATG
                      ____________________________________________________________
consensus             CCTGCGTATCCACCCAATTAATTACCGTATAACTGACGGATCGATTTACGGTATCAAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF040J21+           AGAAATATTCCGGCGGATTCTAGTAGCGTATTCCGGCGAGTTCAAAGCGGTGAGATTTCG
JMFF001O09+           AGAAATATTCCGGCGGATTCTAGTAGCGTATTCCGGCGAGTTCAAAGCGGTGAGATTTCG
                      ____________________________________________________________
consensus             AGAAATATTCCGGCGGATTCTAGTAGCGTATTCCGGCGAGTTCAAAGCGGTGAGATTTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF040J21+           CCGGCGAGATTTGTTCCGATTACACTTTCCAGTTGCGTTCTGACAAGAGGAGATGGTGGT
JMFF001O09+           CCGGCGAGATTTGTTCCGATTACACTTTCCAGTTGCGTTCTGACAAGAGGAGATGGTGGT
                      ____________________________________________________________
consensus             CCGGCGAGATTTGTTCCGATTACACTTTCCAGTTGCGTTCTGACAAGAGGAGATGGTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF040J21+           GGACACTGTCAGAGATAAGAGAGAGAGAGAGAGCGCCGAGAAGAGAATCTCTTTTTCTT 
JMFF001O09+           GGACACTGTCAGAGATAAGAGAGAGAGAGAGAGCGCCGAGAAGAGAATCTCTTTTTCTTC
                      ____________________________________________________________
consensus             GGACACTGTCAGAGATAAGAGAGAGAGAGAGAGCGCCGAGAAGAGAATCTCTTTTTCTTC