Contig 003035:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP001F03Sequence554003035 (7)
JMCP003G05Sequence612003035 (7)
JMCP004F01Sequence645003035 (7)
JMCP004G10Sequence617003035 (7)
JMCP011A06Sequence607003035 (7)
JMCP011A12Sequence542003035 (7)
JMCP011H10Sequence420003035 (7)

Alignment

This contig is upended


. : . : . : . : . : . :
JMCP004F01+ TCGAAAGGACTTAGACCCCACA
JMCP004G10+ TTAGACCCCACA
JMCP011A06+ ACCCCACA
JMCP011A12+ TTAGACCCCACA
JMCP011H10+ AGACCCCACA
JMCP003G05+ TTAGACCCCACA
                      ____________________________________________________________
consensus TCGAAAGGACTTAGACCCCACA
 
. : . : . : . : . : . :
JMCP004F01+ TGGCCTAAATCCAACTAACTAATCTAAAAAAGAGTAACTAAAGATTACAGACGAAGGCCC
JMCP004G10+ TGGCCTAAATCCAACTAACTAATCTAAAAAAGAGTAACTAAAGATTACAGACGAAGGCCC
JMCP011A06+ TGGCCTAAATCCAACTAACTAATCTAAAAAAGAGTAACTAAAGATTACAGACGAAGGCCC
JMCP011A12+ TccggaAAATCgttgattgTtAagaAtAAAAGAGTAACTAAAGATaACAGtCGAAGGggg
JMCP011H10+ TGGCCTAAATCCAACTAACTAATCTAAAAAAGAGTAACTAAAGATTACAGACGAAGGCCC
JMCP003G05+ TGGggTtAtaggAACTAAgattaCTAAAAAAGAGTAACTAAAGATTACAGACGAAGGCCC
rJMCP001F03+ TACAGACGAAGGCCC
                      ____________________________________________________________
consensus TGGCCTAAATCCAACTAACTAATCTAAAAAAGAGTAACTAAAGATTACAGACGAAGGCCC
 
. : . : . : . : . : . :
JMCP004F01+ CGGGGCTATAACATGCGCGGCCCCAAGTCCCATGCTAGCATAGCACTAACGCTAGACCAA
JMCP004G10+ CGGGGCTATAACATGCGCGGCCCCAAGTCCCATGCTAGCATAGCACTAACGCTAGACCAA
JMCP011A06+ CGGGGCTATAACATGCGCGGCCCCAAGTCCCATGCTAGCATAGCACTAACGCTAGACCAA
JMCP011A12+ gccccgataAACATcgcgccggggtAGaggCtacgaAGCATAcgtgattgcgaAGACCtt
JMCP011H10+ CGGGGCTATAACATGCGCGGCCCCAAGTCCCATGCTAGCATAGCACTAACGCTAGACCAA
JMCP003G05+ CGGGGCTATAACATGCGCGGCCCCAAGTCCCATGCTAGCATAGCACTAACGCTAGACCAA
rJMCP001F03+ CGGGGCTATAACATGCGCGGCCCCAAGTCCCATGCTAGCATAGCACTAACGCTAGACCAA
                      ____________________________________________________________
consensus CGGGGCTATAACATGCGCGGCCCCAAGTCCCATGCTAGCATAGCACTAACGCTAGACCAA
 
. : . : . : . : . : . :
JMCP004F01+ ATACTAACTAAGTAATAATAAATAAAGAATAAAAAATAAAAAATACTACCAAGTAGTATG
JMCP004G10+ ATACTAGCTAAGTAATAATAAATAAAGAATAAAAAATAAAAAATACTACCAAGTAGTATG
JMCP011A06+ ATACTAGCTAAGTAATAATAAATAAAGAATAAAAAATAAAAAATACTACCAAGTAGTATG
JMCP011A12+ AatgatcgaAAGTAATAATAAATtttcAATAAAAAATAAAAAtatgatggAAGTAGTATG
JMCP011H10+ ATACTAGCTAAGTAATAATAAATAAAGAATAAAAAATAAAAAATACTACCAAGTAGTATG
JMCP003G05+ ATACTAGCTAAGTAATAATAAATAAAGAATAAAAAATAAAAAATACTACCAAGTAGTATG
rJMCP001F03+ ATACTAGCTAAGTAATAATAAATAAAGAATAAAAAATAAAAAATACTACCAAGTAGTATG
                      ____________________________________________________________
consensus ATACTAGCTAAGTAATAATAAATAAAGAATAAAAAATAAAAAATACTACCAAGTAGTATG
 
. : . : . : . : . : . :
JMCP004F01+ TAGTATGTAGAGTGCACGCCTGCTCGATGAATGAGAATCAAGTATAGTATGTCAGCATCA
JMCP004G10+ TAGTATGTAGAGTGCACGCCTGCTCGATGAATGAGAATCAAGTATAGTATGTCAGCATCA
JMCP011A06+ TAGTATGTAGAGTGCACGCCTGCTCGATGAATGAGAATCAAGTATAGTATGTCAGCATCA
JMCP011A12+ TAGTATGTAGAGTGCtgcggacgTCcAaGAATGAGAATCAAGTATtcaATcaCtcgATCA
JMCP011H10+ TAGTATGTAGAGTGCACGCCTGCTCGATGAATGAGAATCAAGTATAGTATGTCAGCATCA
JMCP003G05+ TAGTATGTAGAGTGCACGCCTGCTCGATGAATGAGAATCAAGTATAGTATGTCAGCATCA
rJMCP001F03+ TAGTATGTAGAGTGCACGCCTGCTCGATGAATGAGAATCAAGTATAGTATGTCAGCATCA
                      ____________________________________________________________
consensus TAGTATGTAGAGTGCACGCCTGCTCGATGAATGAGAATCAAGTATAGTATGTCAGCATCA
 
. : . : . : . : . : . :
JMCP004F01+ CAGCCCATCATATAAATGTGTAAATGGGCAACAAGGGGAAAAGCCATCTTTCGTGTCACG
JMCP004G10+ CAGCCCATCATATAAATGTGTAAATGGGCAACAAGGGGAAAAGCCATCTTTCGTGTCACG
JMCP011A06+ CAGCCCATCATATAAATGTGTAAATGGGCAACAAGGGGAAAAGCCATCTTTCGTGTCACG
JMCP011A12+ gtcCCCATCATATAAATGTGTAAATGGGCAACAAGGGGAAAAGCgATCTTagcacTCtCc
JMCP011H10+ CAGCCCATCATATAAATGTGTAAATGGGCAACAAGGGGAAAAGCCATCTTTCGTGTCACG
JMCP003G05+ CAGCCCATCATATAAATGTGTAAATGGGCAACAAGGGGAAAAGCCATCTTTCGTGTCACG
rJMCP001F03+ CAGCCCATCATATAAATGTGTAAATGGGCAACAAGGGGAAAAGCCATCTTTCGTGTCACG
                      ____________________________________________________________
consensus CAGCCCATCATATAAATGTGTAAATGGGCAACAAGGGGAAAAGCCATCTTTCGTGTCACG
 
. : . : . : . : . : . :
JMCP004F01+ CGCCATAGCACTTCCCCGCCAGCCGCACCATAGCGTCCCAGAACTATAATGCGATCTGAC
JMCP004G10+ CGCCATAGCACTTCCCCGCCAGCCGCACCATAGCGTCCCAGAACTATAATGCAATCTGAC
JMCP011A06+ CGCCATAGCACTTCCCCGCCAGCCGCACCATAGCGTCCCAGAACTATAATGCAATCTGAC
JMCP011A12+ gcCCATAGCAgTTCCggcggtcggcgtggtTAcgcaggCActtgaATAATGCAAagTGAC
JMCP011H10+ CGCCAatcgaaaaagggcggtcggcgtggtatcgcagggtcttgatattacgttagacgg
JMCP003G05+ CGCCATAGCACTTCCCCGCCAGCCGCACCATAGCGTCCCAGAACTATAATGCAATCTGAC
rJMCP001F03+ CGCCATAGCACTTCCCCGCCAGCCACACCATAGCGTCCCAGAACTATAATGCAATCTGAC
                      ____________________________________________________________
consensus CGCCATAGCACTTCCCCGCCAGCCGCACCATAGCGTCCCAGAACTATAATGCAATCTGAC
 
. : . : . : . : . : . :
JMCP004F01+ CGGGCTGCAACCACAACCGCAACATCTCCCGGGGTGCTATTGACTGCCCTGTTA
JMCP004G10+ CGGGCTGCAACCACAACCGCAACATCTCCCGGGGTGCTATTGACTGCCCTGTTACCAAGC
JMCP011A06+ CGGGCTGCAACCACAACCGCAACATCTCCCGGGGTGCTATTGACTGCCCTGTTACCAAGC
JMCP011A12+ CGGcgacCAAggtgttggcgAACAaCagggccGcacgataactgTGCggacTatggAAGC
JMCP011H10+ gccccacgttggtgt
JMCP003G05+ CGGGCTGCAACCACAACCGCAACATCTCCCGGGGTGCTATTGACTGCCCTGTTACCAAGC
rJMCP001F03+ CGGGCTGCAACCACAACCGCAACATCTCCCGGGGTGCTATTGACTGCCCTGTTACCAAGC
                      ____________________________________________________________
consensus CGGGCTGCAACCACAACCGCAACATCTCCCGGGGTGCTATTGACTGCCCTGTTACCAAGC
 
. : . : . : . : . : . :
JMCP004G10+ AATAATACACACCTCCTC-CCCATAGGCTAAAACTTCGGCACACAGACCGATATAATGAG
JMCP011A06+ AATAATACACACCTCCTC-CCCATAGGCTAAAACTTCGGCACACAGACCGATATAATGAG
JMCP011A12+ AATAATACACACCTCgagtgggAatccgattttgaagcGCACtgActggcATATAtTctc
JMCP003G05+ AATAATACACACCTCCTC-CCCATAGGCTAAAACTTCGGCACACAGACCGATATAATGAG
rJMCP001F03+ AATAATACACACCTCCTC-CCCATAGGCTAAAACTTCGGCACACAGACCGATATAATGAG
                      ____________________________________________________________
consensus AATAATACACACCTCCTC-CCCATAGGCTAAAACTTCGGCACACAGACCGATATAATGAG
 
. : . : . : . : . : . :
JMCP004G10+ CAACCAATAGCATCAACCCTGATCAGTACCAGCAACAAACCAGAACCAACCCTAACGGGA
JMCP011A06+ CAACCAATAGCATCAACCCTGATCAGTACCAGCAACAAACCAGAACCAACCCTAACGGGA
JMCP011A12+ gttgCAtatGCATCAACCgactTCAGTACCAGCAACAAACCAGAACCAAC
JMCP003G05+ CAACCAATAGCATCAACCCTGATCAGTACCAGCAACAAACCAGAACCAACCCTAACGGGA
rJMCP001F03+ CAACCAATAGCATCAACCCTGATCAGTACCAGCAACAAACCAGAACCAACCCTAACGGGA
                      ____________________________________________________________
consensus CAACCAATAGCATCAACCCTGATCAGTACCAGCAACAAACCAGAACCAACCCTAACGGGA
 
. : . : . : . : . : . :
JMCP004G10+ TTCGCTACTATGGGTCAGCAACAAGCCTGGACTACCGCCAACGGATTTGAAAAATCCCTA
JMCP011A06+ TTCGCTACTATGGGTCAGCAACAAGCCTGGACTACCGCCAACGGATTTGAAAAATCCCTA
JMCP003G05+ TTCGCTACTATGGGTCAGCAACAAGCCTGGACTACCGCCAACGGATTTGAAAAATCCCTA
rJMCP001F03+ TTCGCTACTATGGGTCAGCAACAAGCCTGGACTACCGCCAACGGATTTGAAAAATCCCTA
                      ____________________________________________________________
consensus TTCGCTACTATGGGTCAGCAACAAGCCTGGACTACCGCCAACGGATTTGAAAAATCCCTA