Contig 003030:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP016D07Sequence366003030 (3)ref|XP_002283240.1|9e-19PREDICTED: R3H domain-containing protein 2 [Vitis vinifera] ref|XP_010653643.1|
JMFF029B14Sequence731003030 (3)ref|XP_002283240.1|5e-68PREDICTED: R3H domain-containing protein 2 [Vitis vinifera] ref|XP_010653643.1|
JMFF031J08Sequence682003030 (3)ref|XP_002283240.1|3e-64PREDICTED: R3H domain-containing protein 2 [Vitis vinifera] ref|XP_010653643.1|

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF029B14+ TTTAGCAGTCCTAATAATTCTGTCTCTGAGGAGTCATTA
                      ____________________________________________________________
consensus TTTAGCAGTCCTAATAATTCTGTCTCTGAGGAGTCATTA
 
. : . : . : . : . : . :
rJMFF029B14+ GCTCGGGCTGCTTCAGATGGAAAGGACACCGTAGGTGAGAATGAATGCTTGAAGAGCTCC
                      ____________________________________________________________
consensus GCTCGGGCTGCTTCAGATGGAAAGGACACCGTAGGTGAGAATGAATGCTTGAAGAGCTCC
 
. : . : . : . : . : . :
rJMFF029B14+ ATAGTGGATTTGGATAAAAAGGTCAGCATCAGGGAAAATGGAAGTTCTTCCAGGGTTGCA
                      ____________________________________________________________
consensus ATAGTGGATTTGGATAAAAAGGTCAGCATCAGGGAAAATGGAAGTTCTTCCAGGGTTGCA
 
. : . : . : . : . : . :
rJMFF029B14+ ATTTTAAGGGACAGGGAGAAGGATCTTATTGACCCTGATTATGACCGAAGTTATGGAAGA
rJMFF031J08+ ATTTTAAGGGACAGGGAGAAGGATCTTATTGACCCTGATTATGACCGAAGTTATGGAAGA
                      ____________________________________________________________
consensus ATTTTAAGGGACAGGGAGAAGGATCTTATTGACCCTGATTATGACCGAAGTTATGGAAGA
 
. : . : . : . : . : . :
rJMFF029B14+ TATGCCAATAAGAATGTACCAACCAATCAAAGCATCAACATGACACCTTTTAATATTCAA
rJMFF031J08+ TATGCCAATAAGAATGTACCAACCAATCAAAGCATCAACATGACACCTTTTAATATTCAA
                      ____________________________________________________________
consensus TATGCCAATAAGAATGTACCAACCAATCAAAGCATCAACATGACACCTTTTAATATTCAA
 
. : . : . : . : . : . :
rJMFF029B14+ AACTTCCAGCCATATGTGCAATACGATTCTTCTTTTCCTCAGCTGTGTCAGATGCCCCGG
rJMFF031J08+ AACTTCCAGCCATATGTGCAATACGATTCTTCTTTTCCTCAGCTGTGTCAGATGCCCCGG
                      ____________________________________________________________
consensus AACTTCCAGCCATATGTGCAATACGATTCTTCTTTTCCTCAGCTGTGTCAGATGCCCCGG
 
. : . : . : . : . : . :
rJMFF029B14+ ACTCAAGCTTCCCTGAACTACACAAACCCAGTTCTGACCCCCTATTATGCAACAGGGTTG
rJMFF031J08+ ACTCAAGCTTCCCTGAACTACACAAACCCAGTTCTGAGCCCCTATTATGCAACAGGGTTG
JMCP016D07- GGGTTG
                      ____________________________________________________________
consensus ACTCAAGCTTCCCTGAACTACACAAACCCAGTTCTGAGCCCCTATTATGCAACAGGGTTG
 
. : . : . : . : . : . :
rJMFF029B14+ CATCCTACTTCTACTGATGCTGTTTACATGCAGTGGCCTACCCAGTCCATGATGTATGCT
rJMFF031J08+ CATCCTACTTCTACTGATGCTGTTTACATGCAGTGGCCTACCCAGTCCATGATGTATGCT
JMCP016D07- CATCCTACTTCTACTGATGCTGTTTACATGCAGTGGCCTACCCAGTCCATGATGTATGCT
                      ____________________________________________________________
consensus CATCCTACTTCTACTGATGCTGTTTACATGCAGTGGCCTACCCAGTCCATGATGTATGCT
 
. : . : . : . : . : . :
rJMFF029B14+ CATTCATATGAGGAACTTCGACATGGTGTTTTCCAGGTCCCATTCTCTCAGCAACCCCTC
rJMFF031J08+ CATTCATATGAGGAACTTCGACATGGTGTTTTCCAGGTCCCATTCTCTCAGCAACCCCTC
JMCP016D07- CATTCATATGAGGAACTTCGACATGGTGTTTTCCAGGTCCCATTCTCTCAGCAACCCCTC
                      ____________________________________________________________
consensus CATTCATATGAGGAACTTCGACATGGTGTTTTCCAGGTCCCATTCTCTCAGCAACCCCTC
 
. : . : . : . : . : . :
rJMFF029B14+ AGTTTTGATTACTCACAAAACCATTGCTGATGGGTAGAATTTGATGGAAAATATCTAGTG
rJMFF031J08+ AGTTTTGATTACTCACAAAACCATTGCTGATGGGTAGAATTTGATGGAAAATATCTAGTG
JMCP016D07- AGTTTTGATTACTCACAAAACCATTGCTGATGGGTAGAATTTGATGGAAAATATCTAGTG
                      ____________________________________________________________
consensus AGTTTTGATTACTCACAAAACCATTGCTGATGGGTAGAATTTGATGGAAAATATCTAGTG
 
. : . : . : . : . : . :
rJMFF029B14+ AAAGCAGGTTTTCCCTCCTTTATAGTGTTATCCTAATTTAGGCTAATTGTTTAAGACCTA
rJMFF031J08+ AAAGCAGGTTTTCCCTCCTTTATAGTGTTATCCTAATTTAGGCTAATTGTTTAAGACCTA
JMCP016D07- AAAGCAGGTTTTCCCTCCTTTATAGTGTTATCCTAATTTAGGCTAATTGTTTAAGACCTA
                      ____________________________________________________________
consensus AAAGCAGGTTTTCCCTCCTTTATAGTGTTATCCTAATTTAGGCTAATTGTTTAAGACCTA
 
. : . : . : . : . : . :
rJMFF029B14+ TGAACTTGGTGTTATAGTATCTTTTGTTTTCATTTTTCGAAATTATCGCAAGGAGGTGAT
rJMFF031J08+ TGAACTTGGTGTTATAGTATCTTTTGTTTTCATTTTTCGAAATTATCGCAAGGAGGTGAT
JMCP016D07- TGAACTTGGTGTTATAGTATCTTTTGTTTTCATTTTTCGAAATTATCGCAAGGAGGTGAT
                      ____________________________________________________________
consensus TGAACTTGGTGTTATAGTATCTTTTGTTTTCATTTTTCGAAATTATCGCAAGGAGGTGAT
 
. : . : . : . : . : . :
rJMFF029B14+ CACTGTAGCACAGAGTACTTGCTATTATTATT
rJMFF031J08+ CACTGTAGCACAGAGTACTTGCTATTATTATT
JMCP016D07- CACTGTAGCACAGAGTACTTGCTATTATTATTTGTAGTGGAACTTCCCGCATGCCTCTAC
                      ____________________________________________________________
consensus CACTGTAGCACAGAGTACTTGCTATTATTATTTGTAGTGGAACTTCCCGCATGCCTCTAC