| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP001G08 | Sequence | 592 | 003026 (8) | emb|CDO99237.1| | 2e-80 | unnamed protein product [Coffea canephora] | |||||
| JMCP003B02 | Sequence | 565 | 003026 (8) | emb|CDO99237.1| | 3e-76 | unnamed protein product [Coffea canephora] | |||||
| JMCP005C01 | Sequence | 621 | 003026 (8) | emb|CDO99237.1| | 7e-86 | unnamed protein product [Coffea canephora] | |||||
| JMCP006G05 | Sequence | 620 | 003026 (8) | emb|CDO99237.1| | 7e-86 | unnamed protein product [Coffea canephora] | |||||
| JMCP007E07 | Sequence | 623 | 003026 (8) | emb|CDO99237.1| | 2e-85 | unnamed protein product [Coffea canephora] | |||||
| JMCP008A06 | Sequence | 608 | 003026 (8) | emb|CDO99237.1| | 6e-93 | unnamed protein product [Coffea canephora] | |||||
| JMCP008F05 | Sequence | 564 | 003026 (8) | emb|CDO99237.1| | 6e-54 | unnamed protein product [Coffea canephora] | |||||
| JMCP009H06 | Sequence | 596 | 003026 (8) | emb|CDO99237.1| | 1e-84 | unnamed protein product [Coffea canephora] | |||||
This contig is upended
. : . : . : . : . : . :
JMCP007E07+ ATTCAGAAACCTGTTCTTCCATTC
JMCP006G05+ AAACCTcaagaagCAaaC
rJMCP009H06+ ACCTGTTCTTCCATTC
rJMCP008A06+ AAACCTGTTCTTCCATTC
JMCP005C01+ AAACCTGTTCTTCCATTC
____________________________________________________________
consensus ATTCAGAAACCTGTTCTTCCATTC
. : . : . : . : . : . :
JMCP007E07+ AGCAATGGCAGGAGATTTCTGAGAATCAAAGATTTTCAGTGATGCAACTTCCTCAAAAAT
JMCP006G05+ AGCAtacGCAGGAAATaagactGAATCAAAGATTTTCAGTGATGCAACTTCCTCAAAAAT
rJMCP009H06+ AGCAATGGCAGGAAATTTCTGAGAATCAAAGATTTTCAGTGATGCAACTTCCTCAAAAAT
rJMCP008A06+ AGCAATGGCAGGAAAaaTCTGAGAATCAAAGATTTTCAGTGATGCAACTTCCTCAAAAtT
JMCP001G08+ GCAGGAAAaaagactGAATCAAAGATTTTCAGTGATGCAACaTCCTCAAAAAT
JMCP003B02+ TTCAGTGATGgttgaaggagttttta
JMCP008F05+ CAGTGATGgttgaaggaCAAAAAT
JMCP005C01+ AGCAATGGCAGGAAATTTCTGAGAATCAAAGATTTTCAGTGATGCAACTTCCTCAAAAAT
____________________________________________________________
consensus AGCAATGGCAGGAAATTTCTGAGAATCAAAGATTTTCAGTGATGCAACTTCCTCAAAAAT
. : . : . : . : . : . :
JMCP007E07+ GGGGAGATTGTGGGCAACCCATCCTACCACAAGGTCCAAATACCCAATCTTCTCCCCTCC
JMCP006G05+ GGGGAGATTGTGGGCAACCCATCCTACCACAAGGTCCAAATACCCAATCTTCTCCCCTCC
rJMCP009H06+ GGGGAGATTGTGGGCAACCCATCCTACCACAAGGTCCAAATACCCAAagTTCTCCCCTCC
rJMCP008A06+ GGGGAGATTGTGGGCAtCCCATCCTACCACAAGGTCCAAATACCCttagaagTCCCCTCg
JMCP001G08+ GGGGAGATTGTGGGCAACCCATggaACCACAAGGTCCAAATACCCAATCTTCTCCCCTCC
JMCP003B02+ ccGGActaacacccgttgggtaggatggtgttccaggttAatgCgttagaTCTCCCCTCC
JMCP008F05+ GGGGAGAaaGTGGGgtACCCATCgaACCACAAGGTTCAAATACCCAGTCTTCTCCCCTCC
JMCP005C01+ GGGGAGATTGTGGGCAACCCATCCTACCACAAGGTCCAAATACCCAATCTTCTCCCCTCC
____________________________________________________________
consensus GGGGAGATTGTGGGCAACCCATCCTACCACAAGGTCCAAATACCCAATCTTCTCCCCTCC
. : . : . : . : . : . :
JMCP007E07+ AAAGAACTGCTTCCCATTAAGCTCAGCTTCCAGCTTCTCCATGGCTTCCATGGCTGAGTT
JMCP006G05+ AAAGAACTGCTTCCCATTAAGCTCAGCTTCCAGCTTCTCCATGGCTTCCATGGCTGAGTT
rJMCP009H06+ AAAGAACTGCTTCCCATTAAcgaCAGCTTCCAGCTTCTCCATGGCTTCCATGGCTGAGTT
rJMCP008A06+ AAAcAtCTGCTTCCCATTAAcgaCAcCTTCCAcCTTCTCCATGCCTTCCATGGCTGAGTT
JMCP001G08+ AAAGAACTGCTTCCCATTAAGCTCAGCTTCCAGCTTCTCCATGGCTTCCATGGCTGAGTT
JMCP003B02+ AAAGAACTGCTTCCCATTAAGCTCAGCTTCCAGCTTCTCCATGGCTTCCATGGgaGAGTT
JMCP008F05+ AAAGAACTGCTTCCCATTAAGCTCAGCTTCCAGCTTCTCCATGGCTTCgtaccgactcaa
JMCP005C01+ AAAGAACTGCTTCCCATTAAGCTCAGCTTCCAGCTTCTCCATGGCTTCCATGGCTGAGTT
____________________________________________________________
consensus AAAGAACTGCTTCCCATTAAGCTCAGCTTCCAGCTTCTCCATGGCTTCCATGGCTGAGTT
. : . : . : . : . : . :
JMCP007E07+ TACTGCACTTTCTTGCTGTTTCCCTTTGGAACACAGTGCTTCCCATGCT-GGGTCCAGAA
JMCP006G05+ CACTGCACTTTCTTGCTGTTTCCCTTTGGAACACAGTGCTTCCCATGCT-GGGTCCAGAA
rJMCP009H06+ TACTGCACTTTCTTGCTGTTTCCCTTTGGAACACAGTGCTTCCCATGCT-GGGTCCAGAA
rJMCP008A06+ TACTGCACTTTCTTGCTGTTTCCCTTTGGAACACAGTGCTTCCCATGCT-GGGTCCAGtt
JMCP001G08+ TACTGCACTTTCTTGCTGTTTCCCTTTGGAACACAGTGCTTCCCATGCT-GGGTCCAGAA
JMCP003B02+ TACTGCACTTTCTTGCTGTTTCCCTTTGGAACACAGTGCTTCCCATGCT-GGGTCCAGAA
JMCP008F05+ atgacgtgaaagaacgacaaagggaaaccttgtgtcacgaaggggaccaccccaggtGtt
JMCP005C01+ TACTGCACTTTCTTGCTGTTTCCCCTTGGAACACAGTGCTTCCCATGCT-GGGTCCAGAA
____________________________________________________________
consensus TACTGCACTTTCTTGCTGTTTCCCTTTGGAACACAGTGCTTCCCATGCT-GGGTCCAGAA
. : . : . : . : . : . :
JMCP007E07+ TCTTAAACTCGGCAAATCCAGCCCAGAACCGAGCCCTGGCACGTTCATATGGATCTGCAG
JMCP006G05+ TCTTAAACTCGGCAAATCCAGCCCAGAACCGAGCCCTGGCACGTTCATATGGATCTGCAG
rJMCP009H06+ agTTAAACTCGGCAAATCCAGCCCAGAACCGAGCCCTGGCACGTTCATATGGAagTGCAG
rJMCP008A06+ agaatAtCagGGgtAATCCAGCCCAGAACCGAGCCCTGGCACGTTCATATGGAagTGCAG
JMCP001G08+ agTTAAACTCGGCAAATCCAGCCCAGAACCGAGCCCTGGCACGTTCATATGGATCTGCAG
JMCP003B02+ TCTTAAACTCGGCAAATCCAGCCCAGAACCGAGCCCTGGCACGTTCATATGGATCTGCAG
JMCP008F05+ aCTTAAACTCGGCAAATCCAGCCCAGAACCGAGCCCTGGCACGTTCATATGGATCTGCAG
JMCP005C01+ TCTTAAACTCGGCAAATCCAGCCCAGAACCGAGCCCTGGCACGTTCATATGGATCTGCAG
____________________________________________________________
consensus TCTTAAACTCGGCAAATCCAGCCCAGAACCGAGCCCTGGCACGTTCATATGGATCTGCAG
. : . : . : . : . : . :
JMCP007E07+ GCAACAAAGGGTTATGCTTCCATGTCTCATCGATGTACTCGAGGATGAGCAGCGACTCAG
JMCP006G05+ GCAACAAAGGGTTATGCTTCCATGTCTCATCGATGTACTCGAGGATGAGCAGCGACTCAG
rJMCP009H06+ GCAACAAAGGGTTATGCTTCgATGTgagATCGATGTACTCGAGGATGAGgtcgcACTCAG
rJMCP008A06+ GgttgtAAGGGTTATGCTTCgATcagagtaCctaGTACTCGAGGATGAGgtcgctgaCAG
JMCP001G08+ GCAACAAAGGGTTATGCTTCCATGTCTCATCGATGTACTCGAGGATGAGCAGCGACTCAG
JMCP003B02+ GCAACAAAGGGTTATGCTTCCATGTCTCATCGATGTACTCGAGGATGAGCAGCGACTCAG
JMCP008F05+ GCAACAAAGGGTTATGCTTCCATGTCTCATCGATGTACTCGAGGATGAGCAGCGACTCAG
JMCP005C01+ GCAACAAAGGGTTATGCTTCCATGTCTCATCGATGTACTCGAGGATGAGCAGCGACTCAG
____________________________________________________________
consensus GCAACAAAGGGTTATGCTTCCATGTCTCATCGATGTACTCGAGGATGAGCAGCGACTCAG
. : . : . : . : . : . :
JMCP007E07+ GCAtTGGCTTCCCATTATGAACTAAGACAGGGACCTTTGCATGAACTGGGTTCAGCTGGG
JMCP006G05+ GCAATGGCTTCCCATTATGAACTAAGACAGGGACCTTTGCATGAACTGGGTTCAGCTGGG
rJMCP009H06+ GgttTGGCTTCCCATTATGAtCTAAGACAGGGACCTTTGCATGAtCTGGGTTCAcCTGGG
rJMCP008A06+ GgttacGCTTCCCATTATcttgaAAGACAGGGACCTTTGCATGAtCTGGGTTgtcCTGcG
JMCP001G08+ GCAATGGCTTCCCATTATGAtgaAAGACAGGGACCTTTGCATGAACTGGGTTCAGCTGGG
JMCP003B02+ GCAATGGCTTCCCATTATGAACTAAGACAGGGACCTaacgtacAAgaGGGTTCAGCTGGG
JMCP008F05+ GCAACGGCTTCCCATTATGAACTAAGACAGGGACCTTTGCATGAACTGGGTTCAGCTGGG
JMCP005C01+ GCAATGGCTTCCCATTATGAACTAAGACAGGGACCTTTGCATGAACTGGGTTCAGCTGGG
____________________________________________________________
consensus GCAATGGCTTCCCATTATGAACTAAGACAGGGACCTTTGCATGAACTGGGTTCAGCTGGG
. : . : . : . : . : . :
JMCP007E07+ AAAGCAAAGGAGTCTTGTTGAAGATGTCTTCTTCTATATATTCATACTCAAGGCCTTTCA
JMCP006G05+ AAAGCAAAGGAGTCTTGTTGAAGATGTCTTCTTCTATATATTCATACTCAAGGCCTTTCA
rJMCP009H06+ AAAGgttAGGAGTCTTGTTGAAGATcagaagaaCTATATATTCATACTCAAGGCCTTTCA
rJMCP008A06+ AAAGgttAGGAGagTTGTTGAAGATcagaagaaCTATATATTCATACTCAAGGCCTTTCA
JMCP001G08+ AAAGCAAAGGAGTCTTGTTGAGGATGTCTagaTCTATATATTCATACTCAAGGCCTTTCA
JMCP003B02+ AAAGCAAAGGAGTCTTGTTGAAGATGTCTTCTTCTATATATTCATACTCAAGGCCTTTCA
JMCP008F05+ AAAGCAAAGGAGTCTTGTTGAAGATGTCTTCTTCTATATATTCATACTCAAGGCCTTTCA
JMCP005C01+ AAAGCAAAGGAGTCTTGTTGAAGATGTCTTCTTCTATATATTCATACTCAAGGCCTTTCA
____________________________________________________________
consensus AAAGCAAAGGAGTCTTGTTGAAGATGTCTTCTTCTATATATTCATACTCAAGGCCTTTCA
. : . : . : . : . : . :
JMCP007E07+ TTCTAAGTGCCCATTTCACTCTCAGTACAAATGGACTCACCCAAAATCCCACCACCTTCA
JMCP006G05+ TTCTAAGTGCCCATTTCACTCTCAGTACAAATGGACTCACCCAAAATCCCACCACCTTCA
rJMCP009H06+ TTCTAAGTGCCCtaTTCACTCTCAGTAgttATGGACTgtgCgttttagCgtgCAgCaagt
rJMCP008A06+ TagattGTGCCgtaTTCtgTCTCAGTAgtttacGAgagtgggttttagCgtggtgCaagt
JMCP001G08+ TagaAAGTGCCCATTTCACTCTCAGTACAAATGGACTCACCCAAAATCCCACCACCTTCA
JMCP003B02+ TTCTAAGTGCCCATTTCACTCTCAGTACAAATGGACTCACCCAAAATCCCACCATCTTCA
JMCP008F05+ TTCTAAGTGCCCATTTCACTCTCAGTACAAATGGACTCACCCAAAATCCCACCACCTTCA
JMCP005C01+ TTCTAAGTGCCCATTTCACTCTCAGTACAAATGGACTCACCCAAAATCCCACCACCTTCA
____________________________________________________________
consensus TTCTAAGTGCCCATTTCACTCTCAGTACAAATGGACTCACCCAAAATCCCACCACCTTCA
. : . : . : . : . : . :
JMCP007E07+ ACCCCTCCTCTGCTGCCATTATCACTACTGTTATGTTTCTGTCTTGTTTTTCTCACCCGG
JMCP006G05+ ACCCCTCCTCTGCTGCCATTATCACTACTGTTATGTTTCTGTCTTGTTTTTCTCACCCGG
rJMCP009H06+ tgCCCTggagacgTcCgtaatagtgatCTGTTATGTTTCTG
rJMCP008A06+ tgCCgaggagacgTcggtaatagtgatgTcaataGaTagacagTTGTTTTT
JMCP001G08+ ACCCCTCCTCTGCTGCCATTATCACTACTGTTATGTTTCTGTCTTGTTTTTCTCACCCGG
JMCP003B02+ ACCCCTCCTCTGCTGCCATTATCACTACTGTTATGTTTCTGTCTTGTTCTTCTCACCCGG
JMCP008F05+ ACCCCTCCTCTGCTGCCATTATCACTACTGTTATGTTTCTGTCTTGTTTTTCTCACCCGG
JMCP005C01+ ACCCCTCCTCTGCTGCCATTATCACTACTGTTATGTTTCTGTCTTGTTTTTCTCACCCGG
____________________________________________________________
consensus ACCCCTCCTCTGCTGCCATTATCACTACTGTTATGTTTCTGTCTTGTTTTTCTCACCCGG