Contig 003024:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP002B02Sequence116003024 (6)
JMCP003B12Sequence116003024 (6)
JMCP019F12Sequence104003024 (6)
JMFF020L16Sequence507003266 (5)ref|XP_006343392.1|3e-15PREDICTED: BUD13 homolog [Solanum tuberosum]742003024 (6)ref|XP_009613363.1|3e-66PREDICTED: BUD13 homolog isoform X2 [Nicotiana tomentosiformis]
JMFF035H18Sequence601003266 (5)ref|XP_009760789.1|2e-19PREDICTED: BUD13 homolog [Nicotiana sylvestris]691003024 (6)ref|XP_006343392.1|1e-45PREDICTED: BUD13 homolog [Solanum tuberosum]
JMFF043M05Sequence613003266 (5)ref|XP_011093999.1|1e-29PREDICTED: BUD13 homolog [Sesamum indicum]610003024 (6)ref|XP_009613363.1|4e-45PREDICTED: BUD13 homolog isoform X2 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF020L16+ TGGCACAAAAGCGTGAGATGGAGGCTAGGCTTGAA
                      ____________________________________________________________
consensus TGGCACAAAAGCGTGAGATGGAGGCTAGGCTTGAA
 
. : . : . : . : . : . :
rJMFF020L16+ GAATTGGAAAGTGAGAAGGAGAAACCATTTGCACGGAGCAGAGATGACCCCGAACTGGAC
                      ____________________________________________________________
consensus GAATTGGAAAGTGAGAAGGAGAAACCATTTGCACGGAGCAGAGATGACCCCGAACTGGAC
 
. : . : . : . : . : . :
rJMFF043M05+ AGAAAAAG
rJMFF035H18+ AGAAAAAG
rJMFF020L16+ AATATGCTGAAGGAGAGGTTGAGATGGGGTGACCCCATGGCACATTTAGTCAAGAAAAAG
                      ____________________________________________________________
consensus AATATGCTGAAGGAGAGGTTGAGATGGGGTGACCCCATGGCACATTTAGTCAAGAAAAAG
 
. : . : . : . : . : . :
rJMFF043M05+ AGAGTGGAGCAGGTTTTGCCTGACCTCGGTGCAGATGACAAAATGAAAGAATCAGGTTTT
rJMFF035H18+ AGAGCGGAGCAGGTTTTGCCTGACATCGGTGCAGATGACAAAATGAAAGAATCTGGTTTC
rJMFF020L16+ AGAGTGGAGCAGGTTTTGCCTGACCTCGGTGCAGATGACAAAATGAAAGAATCAGGTTTT
                      ____________________________________________________________
consensus AGAGTGGAGCAGGTTTTGCCTGACCTCGGTGCAGATGACAAAATGAAAGAATCAGGTTTT
 
. : . : . : . : . : . :
rJMFF043M05+ ATAATTCCCCAAGAAATTCCCCCTCACAGCTGGATACGCAGAGGCTTGGATGCAGCACCG
rJMFF035H18+ ATAATTCCCCAAGAAATACCCCCTCACAGCTGGATACGTAGAGGCTTGGATGCAGCACCC
rJMFF020L16+ ATAATTCCCCAAGAAATTCCCCCTCACAGCTGGATACGCAGAGGCTTGGATGCAGCACCG
                      ____________________________________________________________
consensus ATAATTCCCCAAGAAATTCCCCCTCACAGCTGGATACGCAGAGGCTTGGATGCAGCACCG
 
. : . : . : . : . : . :
rJMFF043M05+ AATCGATATGGTATCAAACCAGGACGGCACTGGGATGGGGTTGACCGCAGTAATGGTTAT
rJMFF035H18+ AATCGCTGTGGTATCAAACCAGGACGGCACTGGGATGGGGTTGACCGCAGTAATGGTTAT
rJMFF020L16+ AATCGATATGGTATCAAACCAGGACGGCACTGGGATGGGGTTGACCGCAGTAATGGTTAT
                      ____________________________________________________________
consensus AATCGATATGGTATCAAACCAGGACGGCACTGGGATGGGGTTGACCGCAGTAATGGTTAT
 
. : . : . : . : . : . :
rJMFF043M05+ GAGAAACAAATGTTTAAACGTGCGAATGAGAAGCAGGCGACCGAAAGAGAGGCATATCTT
rJMFF035H18+ GAGAAACAAATGTTTAACCGTATGAATGAGAAGCAGGCGACCGAAAGAGAGGCATATCTT
rJMFF020L16+ GAGAAACAAATGTTTAAACGTGCGAATGAGAAGCAGGCGACCGAAAGAGAGGCATATCTT
                      ____________________________________________________________
consensus GAGAAACAAATGTTTAAACGTGCGAATGAGAAGCAGGCGACCGAAAGAGAGGCATATCTT
 
. : . : . : . : . : . :
rJMFF043M05+ TGGTCTGTTGCTGACATGTGACCGA--AAGAGAGGCATATCTACCGTAATTTTTCAGGGG
rJMFF035H18+ TGGTCTGTTGCTGACATGTGAGGCATCACTGTTACGCAATGTACAGTCATTTTTCA--GG
rJMFF020L16+ TGGTCTGTTGCTGACATGTGACCGA--AAGAGAGGCATATCTACCGTAATTTTTCAGGGG
                      ____________________________________________________________
consensus TGGTCTGTTGCTGACATGTGACCGA--AAGAGAGGCATATCTACCGTAATTTTTCAGGGG
 
. : . : . : . : . : . :
rJMFF043M05+ GCAACGGATTGCACAACTGATTTACTGACTTAGTTCTACCTGTGTATTAACAGTGTATTA
rJMFF035H18+ GCAACGGATTGCACAACTGATTTACTCATTTAGTTCTACCTGTGTATTAACAGTGTATGA
rJMFF020L16+ GCAACGGATTGCACAACTGATTTACTGACTTAGTTCTACCTGTGTATTAACAGTGTATTA
                      ____________________________________________________________
consensus GCAACGGATTGCACAACTGATTTACTGACTTAGTTCTACCTGTGTATTAACAGTGTATTA
 
. : . : . : . : . : . :
rJMFF043M05+ TGGTTATATACTTATTATTATTGAACATTTGGCTTAAACAAAGGTGTACATATTCAAAGT
rJMFF035H18+ TGGTTATATAC---TTATTATTGAACATTTGGCTTAAACAAAGGTGTTCATATTCAAAGT
rJMFF020L16+ TGGTTATATACTTATTATTATTGAACATTTGGCTTAAACAAAGGTGTACATATTCAAAGT
                      ____________________________________________________________
consensus TGGTTATATACTTATTATTATTGAACATTTGGCTTAAACAAAGGTGTACATATTCAAAGT
 
. : . : . : . : . : . :
rJMFF043M05+ GGGGTTGGGAATGGGG
rJMFF035H18+ GGGGTTGGGAATGGGG
rJMFF020L16+ GGGGTTGGGAATGGGGATGTGTTAAAGCTTTGGTATCTTTCCGCCGACGCCATTATCGGC
                      ____________________________________________________________
consensus GGGGTTGGGAATGGGGATGTGTTAAAGCTTTGGTATCTTTCCGCCGACGCCATTATCGGC
 
. : . : . : . : . : . :
rJMCP019F12- ACGGCCCTGCTCGGCCCCAGAGATCCTCCTTTCCTCTGTTTTCTTTTCACTTTTTT
rJMFF020L16+ AGGGACGGCCCTGCTCGGCCCCAGAGATCCTCCTTTCCTCTGTTTTCTTTTCACTTTTTT
JMCP002B02- ACGGCCCTGCTCGGCCCCtctGATCCTCCTTTCCTCTGTTTTCTTTTCACTTTTTT
JMCP003B12- ACGGCCCTGCTCGGCCCCAGAGATCCTCCTTTCCTCTGTTTTCTTTTCACTTTTTT
                      ____________________________________________________________
consensus AGGGACGGCCCTGCTCGGCCCCAGAGATCCTCCTTTCCTCTGTTTTCTTTTCACTTTTTT
 
. : . : . : . : . : . :
rJMCP019F12- AGTATGTTATATGGAAGTTTATTTTTATAAATTATAATCCATACCGC
rJMFF020L16+ AGTATGTTATATGGAAGTTTATTTTTATAAATTATAATCCATACCGCAA
JMCP002B02- AGTATGTTATATGGAAGTTTATTTTTATAAATTATAATCCATACCGCAATGATTGTTT
JMCP003B12- AGTATGTTATATGGAAGTTTATTTTTATAAATTATAATCCATACCGCAATGATTGTTTTG
                      ____________________________________________________________
consensus AGTATGTTATATGGAAGTTTATTTTTATAAATTATAATCCATACCGCAATGATTGTTTTG