Contig 003018:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010F17Sequence464003574 (4)ref|XP_009597738.1|7e-16PREDICTED: poly(A) RNA polymerase, mitochondrial [Nicotiana tomentosiformis] ref744003018 (3)ref|XP_009773757.1|1e-48PREDICTED: poly(A) RNA polymerase cid11 [Nicotiana sylvestris] ref|XP_009773758.
JMSF023G01Sequence668003574 (4)ref|XP_009773757.1|4e-62PREDICTED: poly(A) RNA polymerase cid11 [Nicotiana sylvestris] ref|XP_009773758.723003018 (3)ref|XP_009773757.1|5e-42PREDICTED: poly(A) RNA polymerase cid11 [Nicotiana sylvestris] ref|XP_009773758.
JMSF052F14Sequence682003574 (4)ref|XP_009773757.1|2e-68PREDICTED: poly(A) RNA polymerase cid11 [Nicotiana sylvestris] ref|XP_009773758.899003018 (3)ref|XP_009773757.1|3e-47PREDICTED: poly(A) RNA polymerase cid11 [Nicotiana sylvestris] ref|XP_009773758.

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010F17+                                                      AGTTCTGTGACATTAG
rJMSF052F14+           AATAACCCAAACCATCCTGGAAATATCTGTCTCCTGTCTATATAGTTCTGTGACATTAG
                      ____________________________________________________________
consensus              AATAACCCAAACCATCCTGGAAATATCTGTCTCCTGTCTATATAGTTCTGTGACATTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010F17+          TTCCAAGGCTTCAGATCAAGGCATAAGCACCTACACTGGACAGTGGGAAGACATTGAAGG
rJMSF023G01+                GGCTTCAGATCAAGGCATAAGCACCTACACTGGACAGTGGGAAGACATTGAAGG
rJMSF052F14+          TTCCAAGGCTTCAGATCAAGGCATAAGCACCTACACTGGACAGTGGGAAGACATTGAAGG
                      ____________________________________________________________
consensus             TTCCAAGGCTTCAGATCAAGGCATAAGCACCTACACTGGACAGTGGGAAGACATTGAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010F17+          CAACATGAGATGGTTACCAAAAACATATTCACTATTTATTGAAGATCCGTTTGAACAACC
rJMSF023G01+          CAACATGAGATGGTTACCAAAAACATATTCACTATTTATTGAAGATCCGTTTGAACAACC
rJMSF052F14+          CAACATGAGATGGTTACCAAAAACATATTCACTATTTATTGAAGATCCGTTTGAACAACC
                      ____________________________________________________________
consensus             CAACATGAGATGGTTACCAAAAACATATTCACTATTTATTGAAGATCCGTTTGAACAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010F17+          TGCTAATACAGCAAGGAGTGTTAGCAGTACACAACTTGCAAACATATCTGAAGCTTTTCA
rJMSF023G01+          TGCTAATACAGCAAGGAGTGTTAGCAGTACACAACTTGCAAACATATCTGAAGCTTTTCA
rJMSF052F14+          TGCTAATACAGCAAGGAGTGTTAGCAGTACACAACTTGCAAACATATCTGAAGCTTTTCA
                      ____________________________________________________________
consensus             TGCTAATACAGCAAGGAGTGTTAGCAGTACACAACTTGCAAACATATCTGAAGCTTTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010F17+          GTCAACCTACAATATGCTTACATCTCCCTATCAAGATCCAAAATTGCTTTTGTCTACTCT
rJMSF023G01+          GTCAACCTACAATATGCTTACATCTCCCTATCAAGATCCAAAATTGCTTTTGTCTACTCT
rJMSF052F14+          GTCAACCTACAATATGCTTACATCTCCCTATCAAGATCCAAAATTGCTTTTGTCTACTCT
                      ____________________________________________________________
consensus             GTCAACCTACAATATGCTTACATCTCCCTATCAAGATCCAAAATTGCTTTTGTCTACTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010F17+          CATGAAGCCACCCACTTCGAAATTTGCGGGTGGAAAACCTACTAGAAACTATGGCAACTA
rJMSF023G01+          CATGAAGCCACCCACTTCGAAATTTGCGGGTGGAAAACCTACTAGAAACTATGGCAACTA
rJMSF052F14+          CATGAAGCCACCCACTTCGAAATTTGCGGGTGGAAAACCTACTAGAAACTATGGCAACTA
                      ____________________________________________________________
consensus             CATGAAGCCACCCACTTCGAAATTTGCGGGTGGAAAACCTACTAGAAACTATGGCAACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010F17+          TAGTAGATATGGCGTCAGGATTCAACAAGCTCAAAGAACCACGCAACCATCATTACAACA
rJMSF023G01+          TAGTAGATATGGCGTCAGGATTCAACAAGCTCAAAGAACCACGCAACCATCATTACAACA
rJMSF052F14+          TAGTAGATATGGCGTCAGGATTCAACAAGCTCAAAGAACCACGCAACCATCATTACAACA
                      ____________________________________________________________
consensus             TAGTAGATATGGCGTCAGGATTCAACAAGCTCAAAGAACCACGCAACCATCATTACAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010F17+          TCAGTTTCAAGACATGAGGATCAACAGGCAGCAGCCGAACAGCAGGGCAATTCATAGACC
rJMSF023G01+          TCAGTTTCAAGACATGAGGATCAACAGGCAGCAGCCGAACAGCAGGGCAATTCATAGACC
rJMSF052F14+          TCAGTTTCAAGACATGAGGATCAACAGGCAGCAGCCGAACAGCAGGGCAATTCATAGACC
                      ____________________________________________________________
consensus             TCAGTTTCAAGACATGAGGATCAACAGGCAGCAGCCGAACAGCAGGGCAATTCATAGACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010F17+          TTCCCAGGATTCTCCTGCTCAATTACAGCCAGTATGGAGGCCTAAATATGACAAAAAGGT
rJMSF023G01+          TTCCCAGGATTCTCCTGCTCAATTACAGCCAGTATGGAGGCCTAAATATGACAAAAAGGT
rJMSF052F14+          TTCCCAGGATTCTCCTGCTCAATTACAGCCAGTATGGAGGCCTAAATATGACAAAAAGGT
                      ____________________________________________________________
consensus             TTCCCAGGATTCTCCTGCTCAATTACAGCCAGTATGGAGGCCTAAATATGACAAAAAGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010F17+          TGCAGAATAATTTGCCTGGCTTAGAGTTTGCATCCTTGAAGAAGCTGATGTTCCATTACG
rJMSF023G01+          TGCAGAATAATTTGCCTGGCTTAGAGTTTGCATCCTTGAAGAAGCTGATGTTCCATTACG
rJMSF052F14+          TGCAGAATAATTTGCCTGGCTTAGAGTTTGCATCCTTGAAGAAGCTGATGTTCCATTACG
                      ____________________________________________________________
consensus             TGCAGAATAATTTGCCTGGCTTAGAGTTTGCATCCTTGAAGAAGCTGATGTTCCATTACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010F17+          TTTCGTCATCTTCTTTTTCATCAGAGAGGTGCCTCTACCCGGAGTTGGAAGGGAAGACCT
rJMSF023G01+          TTTCGTCATCTTCTTTTTCATCAGAGAGGTGCCTCTACCCGGAGTTGGAAGGGAAGACCT
rJMSF052F14+          TTTCGTCATCTTCTTTTTCATCAGAGAGGTGCCTCTACCCGGAGTTGGAAGGGAAGACCT
                      ____________________________________________________________
consensus             TTTCGTCATCTTCTTTTTCATCAGAGAGGTGCCTCTACCCGGAGTTGGAAGGGAAGACCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010F17+          TATGATGAATCTGTTGTTTGTGCTCATTTCCAATTCAATACACAACTGTGCATTGTTGTG
rJMSF023G01+          TATGATGAATCTGTTGTTTGTGCTCATTTCCAATTCAATACACAACTGTGCATTGTTGTG
rJMSF052F14+          TATGATGAATCTGTTGTTTGTGCTCATTTCCAATTCAATACACAACTGTGCATTGTTGTG
                      ____________________________________________________________
consensus             TATGATGAATCTGTTGTTTGTGCTCATTTCCAATTCAATACACAACTGTGCATTGTTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010F17+          AATCCAGTGTTTTGGACCTTTTAAATTTGATAATAGGATTTTAAAAAATGTAATGAGAGG
rJMSF023G01+          AATCCAGTGTTTTGGACCTTTTAAATTTGATAATAGGATTTTAAAAAATGTAATGAGAGG
rJMSF052F14+          AATCCAGTGTTTTGGACCTTTTAAATTTGATAATAGGATTTTAAAAAATGTAATGAGAGG
                      ____________________________________________________________
consensus             AATCCAGTGTTTTGGACCTTTTAAATTTGATAATAGGATTTTAAAAAATGTAATGAGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010F17+          GATGAAC                                                     
rJMSF023G01+          GATGAAC                                                     
rJMSF052F14+          GATGAACATTAAACTCTAAGAACGGGGATAACATTTGTGTTTGATACTTTTGTGGAATTG
                      ____________________________________________________________
consensus             GATGAACATTAAACTCTAAGAACGGGGATAACATTTGTGTTTGATACTTTTGTGGAATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052F14+          TGCTTGTGCTTTGCTCCGTAGAGTTTCTGTATTACTGGTTAACTCTGACCCCAGTTCGAC
                      ____________________________________________________________
consensus             TGCTTGTGCTTTGCTCCGTAGAGTTTCTGTATTACTGGTTAACTCTGACCCCAGTTCGAC