Contig 003008:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF033K23Sequence658005949 (4)ref|XP_009787744.1|1e-69PREDICTED: synaptotagmin-5-like isoform X1 [Nicotiana sylvestris]670003008 (2)ref|XP_006339511.1|2e-26PREDICTED: synaptotagmin-4-like isoform X1 [Solanum tuberosum] ref|XP_006339512.
JMSF049F24Sequence630005949 (4)ref|XP_009787744.1|1e-63PREDICTED: synaptotagmin-5-like isoform X1 [Nicotiana sylvestris]727003008 (2)ref|XP_006339511.1|7e-31PREDICTED: synaptotagmin-4-like isoform X1 [Solanum tuberosum] ref|XP_006339512.

Alignment

This contig is upended


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rJMSF049F24+                                                               ACGAGAC
                      ____________________________________________________________
consensus                                                                  ACGAGAC
 
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rJMSF033K23+                                                      TGAGGTGTTTGATAAA
rJMSF049F24+          ATTTGAGTTGATGCAGAAGACAAGGAGACACAATTTGTTATCCNTGAGGTGTTTGATAAA
                      ____________________________________________________________
consensus             ATTTGAGTTGATGCAGAAGACAAGGAGACACAATTTGTTATCCNTGAGGTGTTTGATAAA
 
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rJMSF033K23+          GACAATGTCGGGCAAGATGAGAGAATGGGAGTTGCTAAGTTACCTTTGAAGGATTTGGAA
rJMSF049F24+          GACAATGTCGGGCAAGATGAGAGAATGGGAGTTGCTAAGTTACCTTTGAAGGATTTGGAA
                      ____________________________________________________________
consensus             GACAATGTCGGGCAAGATGAGAGAATGGGAGTTGCTAAGTTACCTTTGAAGGATTTGGAA
 
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rJMSF033K23+          GCTGGAAAAGCCAAAGAAATTGAATTGAGATTGCTGCCAAAACTCGATATGCTTAAAGTC
rJMSF049F24+          GCTGGAAAAGCCAAAGAAATTGAATTGAGATTGCTGCCAAAACTCGATATGCTTAAAGTC
                      ____________________________________________________________
consensus             GCTGGAAAAGCCAAAGAAATTGAATTGAGATTGCTGCCAAAACTCGATATGCTTAAAGTC
 
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rJMSF033K23+          AAAGACAAGAAGGATAGAGGGACCCTTACAATTAAGGTGTTTTATCAAGAATTCAACAAG
rJMSF049F24+          AAAGACAAGAAGGATAGAGGGACCCTTACAATTAAGGTGTTTTATCAAGAATTCAACAAG
                      ____________________________________________________________
consensus             AAAGACAAGAAGGATAGAGGGACCCTTACAATTAAGGTGTTTTATCAAGAATTCAACAAG
 
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rJMSF033K23+          GAAGAGCAGCAAGCTGCTCTGGAGGAAGAGAAGGCGATCCTAGAACAAAGGAAGAAGCTG
rJMSF049F24+          GAAGAGCAGCAAGCTGCTCTGGAGGAAGAGAAGGCGATCCTAGAACAAAGGAAGAAGCTG
                      ____________________________________________________________
consensus             GAAGAGCAGCAAGCTGCTCTGGAGGAAGAGAAGGCGATCCTAGAACAAAGGAAGAAGCTG
 
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rJMSF033K23+          AAAGCAGCAGGTGTGATAGGGAGCACTATGGATGCCATTGACGGGGCGGCATCACTCGTG
rJMSF049F24+          AAAGCAGCAGGTGTGATAGGGAGCACTATGGATGCCATTGACGGGGCGGCATCACTCGTG
                      ____________________________________________________________
consensus             AAAGCAGCAGGTGTGATAGGGAGCACTATGGATGCCATTGACGGGGCGGCATCACTCGTG
 
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rJMSF033K23+          GGTTCGGGCGTTGGTATGGTAGGTAGCGGCATTGGGGCTGGCGTTGGGGTGGTGGGAAGT
rJMSF049F24+          GGTTCGGGCGTTGGTATGGTAGGTAGCGGCATTGGGGCTGGCGTTGGGGTGGTGGGAAGT
                      ____________________________________________________________
consensus             GGTTCGGGCGTTGGTATGGTAGGTAGCGGCATTGGGGCTGGCGTTGGGGTGGTGGGAAGT
 
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rJMSF033K23+          GGGCTTGGAGCCGTTGGGTCTGGACTGAGTAAAGCTGGAAGGTTTATGGGCAGGACATTT
rJMSF049F24+          GGGCTTGGAGCCGTTGGGTCTGGACTGAGTAAAGCTGGAAGGTTTATGGGCAGGACATTT
                      ____________________________________________________________
consensus             GGGCTTGGAGCCGTTGGGTCTGGACTGAGTAAAGCTGGAAGGTTTATGGGCAGGACATTT
 
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rJMSF033K23+          ACTGGGAATTCAAGCAGTTCTAAGAGTCAGCGGAGTGGCTCCTCCACCCCGGTCAACTCT
rJMSF049F24+          ACTGGGAATTCAAGCAGTTCTAAGAGTCAGCGGAGTGGCTCCTCCACCCCGGTCAACTCT
                      ____________________________________________________________
consensus             ACTGGGAATTCAAGCAGTTCTAAGAGTCAGCGGAGTGGCTCCTCCACCCCGGTCAACTCT
 
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rJMSF033K23+          GTTCAAGAAAACGGCGGCGCAAAGCCACGCTAGTCTCAGATCATATCTTATCATATCATA
rJMSF049F24+          GTTCAAGAAAACGGCGGCGCAAAGCCACGCTAGTCTCAGATCATATCTTATCATATCATA
                      ____________________________________________________________
consensus             GTTCAAGAAAACGGCGGCGCAAAGCCACGCTAGTCTCAGATCATATCTTATCATATCATA
 
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rJMSF033K23+          TAGACACTCTTGCTTATTAGTGTGAATGAATGATGGATTTTTCGCTAACACTGGATTCAT
rJMSF049F24+          TAGACACTCTTGCTTATTAGTGTGAATGAATGATGGATTTTTCGCTAACACTGGATTCAT
                      ____________________________________________________________
consensus             TAGACACTCTTGCTTATTAGTGTGAATGAATGATGGATTTTTCGCTAACACTGGATTCAT
 
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rJMSF033K23+          TTCACTTTTATACATTCAGTTCTCAAGTGTATTGGCTCACCTAATATTTTCTCA      
rJMSF049F24+          TTCACTTTTATACATTCAGTTCTCAAGTGTATTGGCTCACCTAATATTTTCTCATAAATT
                      ____________________________________________________________
consensus             TTCACTTTTATACATTCAGTTCTCAAGTGTATTGGCTCACCTAATATTTTCTCATAAATT