Contig 002984:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036I24Sequence540002984 (7)ref|XP_009789523.1|146PREDICTED: uncharacterized protein LOC104237133 [Nicotiana sylvestris]580002984 (7)ref|XP_009789523.1|146PREDICTED: uncharacterized protein LOC104237133 [Nicotiana sylvestris]
JMFN001E07Sequence415002984 (7)ref|XP_009789523.1|115PREDICTED: uncharacterized protein LOC104237133 [Nicotiana sylvestris]
JMSF020L12Sequence629002984 (7)ref|XP_009789523.1|146PREDICTED: uncharacterized protein LOC104237133 [Nicotiana sylvestris]584002984 (7)ref|XP_009789523.1|146PREDICTED: uncharacterized protein LOC104237133 [Nicotiana sylvestris]
JMSF046N16Sequence628002984 (7)ref|XP_009789523.1|146PREDICTED: uncharacterized protein LOC104237133 [Nicotiana sylvestris]571002984 (7)ref|XP_009789523.1|146PREDICTED: uncharacterized protein LOC104237133 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF020L12+ TTTTTTTTTTGACTATAAGCAAGTAGCAATTTCA
JMSF046N16+ TAAGCAAGTAGCAATTTCA
                      ____________________________________________________________
consensus TTTTTTTTTTGACTATAAGCAAGTAGCAATTTCA
 
. : . : . : . : . : . :
rJMSF020L12- ATTTCAGTGTTGATAACATATATGATTAAAGAGAAATATAAGGAAT
JMFF036I24+ GATAACATATATGATTAAAGAGAAATATAAGGAAT
rJMFF036I24- ATTTCAGTGTTGATAACATATATGATTAAAGAGAAATATAAGGAAT
JMSF020L12+ TTGGCAAATCAGCAATTTCAGTGTTGATAACATATATGATTAAAGAGAAATATAAGGAAT
JMSF046N16+ TTGGCAAATCAGCAATTTCAGTGTTGATAACATATATGATTAAAGAGAAATATAAGGAAT
rJMSF046N16- ACATATATGATTAAAGAGAAATATAAGGAAT
                      ____________________________________________________________
consensus TTGGCAAATCAGCAATTTCAGTGTTGATAACATATATGATTAAAGAGAAATATAAGGAAT
 
. : . : . : . : . : . :
rJMSF020L12- TTTTCAAGATTTTTGAGCTTCAGGCCCTAAAATACCGTTAACGATTGAAGTGGCGATTAG
JMFF036I24+ TTTTCAAGATTTTTGAGCTTCAGGCCCTAAAATACCGTTAACGATTGAAGTGGCGATTAG
rJMFF036I24- TTTTCAAGATTTTTGAGCTTCAGGCCCTAAAATACCGTTAACGATTGAAGTGGCGATTAG
JMSF020L12+ TTTTCAAGATTTTTGAGCTTCAGGCCCTAAAATACCGTTAACGATTGAAGTGGCGATTAG
JMSF046N16+ TTTTCAAGATTTTTGAGCTTCAGGCCCTAAAATACCGTTAACGATTGAAGTGGCGATTAG
rJMSF046N16- TTTTCAAGATTTTTGAGCTTCAGGCCCTAAAATACCGTTAACGATTGAAGTGGCGATTAG
                      ____________________________________________________________
consensus TTTTCAAGATTTTTGAGCTTCAGGCCCTAAAATACCGTTAACGATTGAAGTGGCGATTAG
 
. : . : . : . : . : . :
rJMSF020L12- AATTCCGAGAAATTCTGCTGCGGCAACCGCGCCAGCTTGTGCTAATGCTCCGAAGCTCAC
JMFF036I24+ AATTCCGAGAAATTCTGCTGCGGCAACCGCGCCAGCTTGTGCTAATGCTCCGAAGCTCAC
rJMFF036I24- AATTCCGAGAAATTCTGCTGCGGCAACCGCGCCAGCTTGTGCTAATGCTCCGAAGCTCAC
JMFN001E07+ AATGCTCCGAAGCTCAC
JMSF020L12+ AATTCCGAGAAATTCTGCTGCGGCAACCGCGCCAGCTTGTGCTAATGCTCCGAAGCTCAC
JMSF046N16+ AATTCCGAGAAATTCTGCTGCGGCAACCGCGCCAGCTTGTGCTAATGCTCCGAAGCTCAC
rJMSF046N16- AATTCCGAGAAATTCTGCTGCGGCAACCGCGCCAGCTTGTGCTAATGCTCCGAAGCTCAC
                      ____________________________________________________________
consensus AATTCCGAGAAATTCTGCTGCGGCAACCGCGCCAGCTTGTGCTAATGCTCCGAAGCTCAC
 
. : . : . : . : . : . :
rJMSF020L12- CGTCGTCTCAATCTCTTTCTCTGCAGCTTCGATTCCCTTCTCCGCCGTCGATAATCCTGT
JMFF036I24+ CGTCGTCTCAATCTCTTTCTCTGCAGCTTCGATTCCCTTCTCCGCCGTCGATAATCCTGT
rJMFF036I24- CGTCGTCTCAATCTCTTTCTCTGCAGCTTCGATTCCCTTCTCCGCCGTCGATAATCCTGT
JMFN001E07+ CGTCGTCTCAATCTCTTTCTCTGCAGCTTCGATTCCCTTCTCCGCCGTCGATAATCCTGT
JMSF020L12+ CGTCGTCTCAATCTCTTTCTCTGCAGCTTCGATTCCCTTCTCCGCCGTCGATAATCCTGT
JMSF046N16+ CGTCGTCTCAATCTCTTTCTCTGCAGCTTCGATTCCCTTCTCCGCCGTCGATAATCCTGT
rJMSF046N16- CGTCGTCTCAATCTCTTTCTCTGCAGCTTCGATTCCCTTCTCCGCCGTCGATAATCCTGT
                      ____________________________________________________________
consensus CGTCGTCTCAATCTCTTTCTCTGCAGCTTCGATTCCCTTCTCCGCCGTCGATAATCCTGT
 
. : . : . : . : . : . :
rJMSF020L12- CTCCGCAGCCTCAATCCCCTTTTCTGCTGCTACTATTCCCTTGTCCGCCGCCTCGAATCC
JMFF036I24+ CTCCGCAGCCTCAATCCCCTTTTCTGCTGCTACTATTCCCTTGTCCGCCGCCTCGAATCC
rJMFF036I24- CTCCGCAGCCTCAATCCCCTTTTCTGCTGCTACTATTCCCTTGTCCGCCGCCTCGAATCC
JMFN001E07+ CTCCGCAGCCTCAATCCCCTTTTCTGCTGCTACTATTCCCTTGTCCGCCGCCTCGAATCC
JMSF020L12+ CTCCGCAGCCTCAATCCCCTTTTCTGCTGCTACTATTCCCTTGTCCGCCGCCTCGAATCC
JMSF046N16+ CTCCGCAGCCTCAATCCCCTTTTCTGCTGCTACTATTCCCTTGTCCGCCGCCTCGAATCC
rJMSF046N16- CTCCGCAGCCTCAATCCCCTTTTCTGCTGCTACTATTCCCTTGTCCGCCGCCTCGAATCC
                      ____________________________________________________________
consensus CTCCGCAGCCTCAATCCCCTTTTCTGCTGCTACTATTCCCTTGTCCGCCGCCTCGAATCC
 
. : . : . : . : . : . :
rJMSF020L12- TTCCTTCACTAGCAACTCCGCTTCCTCCTCCACCTTCTTCAGCTTCTTCCTAAGTCCAAA
JMFF036I24+ TTCCTTCACTAGCAACTCCGCTTCCTCCTCCACCTTCTTCAGCTTCTTCCTAAGTCCAAA
rJMFF036I24- TTCCTTCACTAGCAACTCCGCTTCCTCCTCCACCTTCTTCAGCTTCTTCCTAAGTCCAAA
JMFN001E07+ TTCCTTCACTAGCAACTCCGCTTCCTCCTCCACCTTCTTCAGCTTCTTCCTAAGTCCAAA
JMSF020L12+ TTCCTTCACTAGCAACTCCGCTTCCTCCTCCACCTTCTTCAGCTTCTTCCTAAGTCCAAA
JMSF046N16+ TTCCTTCACTAGCAACTCCGCTTCCTCCTCCACCTTCTTCAGCTTCTTCCTAAGTCCAAA
rJMSF046N16- TTCCTTCACTAGCAACTCCGCTTCCTCCTCCACCTTCTTCAGCTTCTTCCTAAGTCCAAA
                      ____________________________________________________________
consensus TTCCTTCACTAGCAACTCCGCTTCCTCCTCCACCTTCTTCAGCTTCTTCCTAAGTCCAAA
 
. : . : . : . : . : . :
rJMSF020L12- CAGCCCGATATCTTCCGCTCTCGACGGCATTTCCATTCCCTTCAGCGCCGTCGTCGCCGT
JMFF036I24+ CAGCCCGATATCTTCCGCTCTCGACGGCATTTCCATTCCCTTCAGCGCCGTCGTCGCCGT
rJMFF036I24- CAGCCCGATATCTTCCGCTCTCGACGGCATTTCCATTCCCTTCAGCGCCGTCGTCGCCGT
JMFN001E07+ CAGCCCGATATCTTCCGCTCTCGACGGCATTTCCATTCCCTTCAGCGCCGTCGTCGCCGT
JMSF020L12+ CAGCCCGATATCTTCCGCTCTCGACGGCATTTCCATTCCCTTCAGCGCCGTCGTCGCCGT
JMSF046N16+ CAGCCCGATATCTTCCGCTCTCGACGGCATTTCCATTCCCTTCAGCGCCGTCGTCGCCGT
rJMSF046N16- CAGCCCGATATCTTCCGCTCTCGACGGCATTTCCATTCCCTTCAGCGCCGTCGTCGCCGT
                      ____________________________________________________________
consensus CAGCCCGATATCTTCCGCTCTCGACGGCATTTCCATTCCCTTCAGCGCCGTCGTCGCCGT
 
. : . : . : . : . : . :
rJMSF020L12- GAGCAGCACTATCCACTGCCTCCGCCCGGTGACAGCCGCCGGCGAAGCTTTAGTGCTGTG
JMFF036I24+ GAGCAGCACTATCCACTGCCTCCGCCCGGTGACAGCCGCCGGCGAAGCTTTAGTGCTGTG
rJMFF036I24- GAGCAGCACTATCCACTGCCTCCGCCCGGTGACAGCCGCCGGCGAAGCTTTAGTGCTGTG
JMFN001E07+ GAGCAGCACTATCCACTGCCTCCGCCCGGTGACAGCCGCCGGCGAAGCTTTAGTGCTGTG
JMSF020L12+ GAGCAGCACTATCCACTGCCTCCGCCCGGTGACAGCCGCCGGCGAAGCTTTAGTGCTGTG
JMSF046N16+ GAGCAGCACTATCCACTGCCTCCGCCCGGTGACAGCCGCCGGCGAAGCTTTAGTGCTGTG
rJMSF046N16- GAGCAGCACTATCCACTGCCTCCGCCCGGTGACAGCCGCCGGCGAAGCTTTAGTGCTGTG
                      ____________________________________________________________
consensus GAGCAGCACTATCCACTGCCTCCGCCCGGTGACAGCCGCCGGCGAAGCTTTAGTGCTGTG
 
. : . : . : . : . : . :
rJMSF020L12- CGGCTTGCCGGAAGTAGCATCGGCGGCGATACGCATGCAGCGAACTGGAAATGTCGGCGC
JMFF036I24+ CGGCTTGCCGGAAGTAGCATCGGCGGCGATACGCATGCAGCGAACTGGAAATGTCGGCGC
rJMFF036I24- CGGCTTGCCGGAAGTAGCATCGGCGGCGATACGCATGCAGCGAACTGGAAATGTCGGCGC
JMFN001E07+ CGGCTTGCCGGAAGTAGCATCGGCGGCGATACGCATGCAGCGAACTGGAAATGTCGGCGC
JMSF020L12+ CGGCTTGCCGGAAGTAGCATCGGCGGCGATACGCATGCAGCGAACTGGAAATGTCGGCGC
JMSF046N16+ CGGCTTGCCGGAAGTAGCATCGGCGGCGATACGCATGCAGCGAACTGGAAATGTCGGCGC
rJMSF046N16- CGGCTTGCCGGAAGTAGCATCGGCGGCGATACGCATGCAGCGAACTGGAAATGTCGGCGC
                      ____________________________________________________________
consensus CGGCTTGCCGGAAGTAGCATCGGCGGCGATACGCATGCAGCGAACTGGAAATGTCGGCGC
 
. : . : . : . : . : . :
rJMSF020L12- GAGAATTGAGCTTGCGGAAGCCATGGCAACTGCCAGTCTCTATGCAATCAAACT
JMFF036I24+ GAGAATTGAGCTTGCGGAAGCCAT
rJMFF036I24- GAGAATTGAGCTTGCGGAAGCCAT
JMFN001E07+ GAGAATTGAGCTTGCGGAAGCCATGGCAACTGCCAGTC
JMSF020L12+ GAGAATTGAGCTTGCGGAAGCCATGGCAACTGCCAGTCTCTATGCAATCAAACT
JMSF046N16+ GAGAATTGAGCTTGCGGAAGCCATGGCAACTGCCAGTCTCTATGCAATCAAACT
rJMSF046N16- GAGAATTGAGCTTGCGGAAGCCATGGCAACTGCCAGTCTCTATGCAATCAAACTGATACC
                      ____________________________________________________________
consensus GAGAATTGAGCTTGCGGAAGCCATGGCAACTGCCAGTCTCTATGCAATCAAACTGATACC