clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF036I24 | Sequence | 540 | 002984 (7) | ref|XP_009789523.1| | 146 | PREDICTED: uncharacterized protein LOC104237133 [Nicotiana sylvestris] | 580 | 002984 (7) | ref|XP_009789523.1| | 146 | PREDICTED: uncharacterized protein LOC104237133 [Nicotiana sylvestris] |
JMFN001E07 | Sequence | 415 | 002984 (7) | ref|XP_009789523.1| | 115 | PREDICTED: uncharacterized protein LOC104237133 [Nicotiana sylvestris] | |||||
JMSF020L12 | Sequence | 629 | 002984 (7) | ref|XP_009789523.1| | 146 | PREDICTED: uncharacterized protein LOC104237133 [Nicotiana sylvestris] | 584 | 002984 (7) | ref|XP_009789523.1| | 146 | PREDICTED: uncharacterized protein LOC104237133 [Nicotiana sylvestris] |
JMSF046N16 | Sequence | 628 | 002984 (7) | ref|XP_009789523.1| | 146 | PREDICTED: uncharacterized protein LOC104237133 [Nicotiana sylvestris] | 571 | 002984 (7) | ref|XP_009789523.1| | 146 | PREDICTED: uncharacterized protein LOC104237133 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF020L12+ TTTTTTTTTTGACTATAAGCAAGTAGCAATTTCA
JMSF046N16+ TAAGCAAGTAGCAATTTCA
____________________________________________________________
consensus TTTTTTTTTTGACTATAAGCAAGTAGCAATTTCA
. : . : . : . : . : . :
rJMSF020L12- ATTTCAGTGTTGATAACATATATGATTAAAGAGAAATATAAGGAAT
JMFF036I24+ GATAACATATATGATTAAAGAGAAATATAAGGAAT
rJMFF036I24- ATTTCAGTGTTGATAACATATATGATTAAAGAGAAATATAAGGAAT
JMSF020L12+ TTGGCAAATCAGCAATTTCAGTGTTGATAACATATATGATTAAAGAGAAATATAAGGAAT
JMSF046N16+ TTGGCAAATCAGCAATTTCAGTGTTGATAACATATATGATTAAAGAGAAATATAAGGAAT
rJMSF046N16- ACATATATGATTAAAGAGAAATATAAGGAAT
____________________________________________________________
consensus TTGGCAAATCAGCAATTTCAGTGTTGATAACATATATGATTAAAGAGAAATATAAGGAAT
. : . : . : . : . : . :
rJMSF020L12- TTTTCAAGATTTTTGAGCTTCAGGCCCTAAAATACCGTTAACGATTGAAGTGGCGATTAG
JMFF036I24+ TTTTCAAGATTTTTGAGCTTCAGGCCCTAAAATACCGTTAACGATTGAAGTGGCGATTAG
rJMFF036I24- TTTTCAAGATTTTTGAGCTTCAGGCCCTAAAATACCGTTAACGATTGAAGTGGCGATTAG
JMSF020L12+ TTTTCAAGATTTTTGAGCTTCAGGCCCTAAAATACCGTTAACGATTGAAGTGGCGATTAG
JMSF046N16+ TTTTCAAGATTTTTGAGCTTCAGGCCCTAAAATACCGTTAACGATTGAAGTGGCGATTAG
rJMSF046N16- TTTTCAAGATTTTTGAGCTTCAGGCCCTAAAATACCGTTAACGATTGAAGTGGCGATTAG
____________________________________________________________
consensus TTTTCAAGATTTTTGAGCTTCAGGCCCTAAAATACCGTTAACGATTGAAGTGGCGATTAG
. : . : . : . : . : . :
rJMSF020L12- AATTCCGAGAAATTCTGCTGCGGCAACCGCGCCAGCTTGTGCTAATGCTCCGAAGCTCAC
JMFF036I24+ AATTCCGAGAAATTCTGCTGCGGCAACCGCGCCAGCTTGTGCTAATGCTCCGAAGCTCAC
rJMFF036I24- AATTCCGAGAAATTCTGCTGCGGCAACCGCGCCAGCTTGTGCTAATGCTCCGAAGCTCAC
JMFN001E07+ AATGCTCCGAAGCTCAC
JMSF020L12+ AATTCCGAGAAATTCTGCTGCGGCAACCGCGCCAGCTTGTGCTAATGCTCCGAAGCTCAC
JMSF046N16+ AATTCCGAGAAATTCTGCTGCGGCAACCGCGCCAGCTTGTGCTAATGCTCCGAAGCTCAC
rJMSF046N16- AATTCCGAGAAATTCTGCTGCGGCAACCGCGCCAGCTTGTGCTAATGCTCCGAAGCTCAC
____________________________________________________________
consensus AATTCCGAGAAATTCTGCTGCGGCAACCGCGCCAGCTTGTGCTAATGCTCCGAAGCTCAC
. : . : . : . : . : . :
rJMSF020L12- CGTCGTCTCAATCTCTTTCTCTGCAGCTTCGATTCCCTTCTCCGCCGTCGATAATCCTGT
JMFF036I24+ CGTCGTCTCAATCTCTTTCTCTGCAGCTTCGATTCCCTTCTCCGCCGTCGATAATCCTGT
rJMFF036I24- CGTCGTCTCAATCTCTTTCTCTGCAGCTTCGATTCCCTTCTCCGCCGTCGATAATCCTGT
JMFN001E07+ CGTCGTCTCAATCTCTTTCTCTGCAGCTTCGATTCCCTTCTCCGCCGTCGATAATCCTGT
JMSF020L12+ CGTCGTCTCAATCTCTTTCTCTGCAGCTTCGATTCCCTTCTCCGCCGTCGATAATCCTGT
JMSF046N16+ CGTCGTCTCAATCTCTTTCTCTGCAGCTTCGATTCCCTTCTCCGCCGTCGATAATCCTGT
rJMSF046N16- CGTCGTCTCAATCTCTTTCTCTGCAGCTTCGATTCCCTTCTCCGCCGTCGATAATCCTGT
____________________________________________________________
consensus CGTCGTCTCAATCTCTTTCTCTGCAGCTTCGATTCCCTTCTCCGCCGTCGATAATCCTGT
. : . : . : . : . : . :
rJMSF020L12- CTCCGCAGCCTCAATCCCCTTTTCTGCTGCTACTATTCCCTTGTCCGCCGCCTCGAATCC
JMFF036I24+ CTCCGCAGCCTCAATCCCCTTTTCTGCTGCTACTATTCCCTTGTCCGCCGCCTCGAATCC
rJMFF036I24- CTCCGCAGCCTCAATCCCCTTTTCTGCTGCTACTATTCCCTTGTCCGCCGCCTCGAATCC
JMFN001E07+ CTCCGCAGCCTCAATCCCCTTTTCTGCTGCTACTATTCCCTTGTCCGCCGCCTCGAATCC
JMSF020L12+ CTCCGCAGCCTCAATCCCCTTTTCTGCTGCTACTATTCCCTTGTCCGCCGCCTCGAATCC
JMSF046N16+ CTCCGCAGCCTCAATCCCCTTTTCTGCTGCTACTATTCCCTTGTCCGCCGCCTCGAATCC
rJMSF046N16- CTCCGCAGCCTCAATCCCCTTTTCTGCTGCTACTATTCCCTTGTCCGCCGCCTCGAATCC
____________________________________________________________
consensus CTCCGCAGCCTCAATCCCCTTTTCTGCTGCTACTATTCCCTTGTCCGCCGCCTCGAATCC
. : . : . : . : . : . :
rJMSF020L12- TTCCTTCACTAGCAACTCCGCTTCCTCCTCCACCTTCTTCAGCTTCTTCCTAAGTCCAAA
JMFF036I24+ TTCCTTCACTAGCAACTCCGCTTCCTCCTCCACCTTCTTCAGCTTCTTCCTAAGTCCAAA
rJMFF036I24- TTCCTTCACTAGCAACTCCGCTTCCTCCTCCACCTTCTTCAGCTTCTTCCTAAGTCCAAA
JMFN001E07+ TTCCTTCACTAGCAACTCCGCTTCCTCCTCCACCTTCTTCAGCTTCTTCCTAAGTCCAAA
JMSF020L12+ TTCCTTCACTAGCAACTCCGCTTCCTCCTCCACCTTCTTCAGCTTCTTCCTAAGTCCAAA
JMSF046N16+ TTCCTTCACTAGCAACTCCGCTTCCTCCTCCACCTTCTTCAGCTTCTTCCTAAGTCCAAA
rJMSF046N16- TTCCTTCACTAGCAACTCCGCTTCCTCCTCCACCTTCTTCAGCTTCTTCCTAAGTCCAAA
____________________________________________________________
consensus TTCCTTCACTAGCAACTCCGCTTCCTCCTCCACCTTCTTCAGCTTCTTCCTAAGTCCAAA
. : . : . : . : . : . :
rJMSF020L12- CAGCCCGATATCTTCCGCTCTCGACGGCATTTCCATTCCCTTCAGCGCCGTCGTCGCCGT
JMFF036I24+ CAGCCCGATATCTTCCGCTCTCGACGGCATTTCCATTCCCTTCAGCGCCGTCGTCGCCGT
rJMFF036I24- CAGCCCGATATCTTCCGCTCTCGACGGCATTTCCATTCCCTTCAGCGCCGTCGTCGCCGT
JMFN001E07+ CAGCCCGATATCTTCCGCTCTCGACGGCATTTCCATTCCCTTCAGCGCCGTCGTCGCCGT
JMSF020L12+ CAGCCCGATATCTTCCGCTCTCGACGGCATTTCCATTCCCTTCAGCGCCGTCGTCGCCGT
JMSF046N16+ CAGCCCGATATCTTCCGCTCTCGACGGCATTTCCATTCCCTTCAGCGCCGTCGTCGCCGT
rJMSF046N16- CAGCCCGATATCTTCCGCTCTCGACGGCATTTCCATTCCCTTCAGCGCCGTCGTCGCCGT
____________________________________________________________
consensus CAGCCCGATATCTTCCGCTCTCGACGGCATTTCCATTCCCTTCAGCGCCGTCGTCGCCGT
. : . : . : . : . : . :
rJMSF020L12- GAGCAGCACTATCCACTGCCTCCGCCCGGTGACAGCCGCCGGCGAAGCTTTAGTGCTGTG
JMFF036I24+ GAGCAGCACTATCCACTGCCTCCGCCCGGTGACAGCCGCCGGCGAAGCTTTAGTGCTGTG
rJMFF036I24- GAGCAGCACTATCCACTGCCTCCGCCCGGTGACAGCCGCCGGCGAAGCTTTAGTGCTGTG
JMFN001E07+ GAGCAGCACTATCCACTGCCTCCGCCCGGTGACAGCCGCCGGCGAAGCTTTAGTGCTGTG
JMSF020L12+ GAGCAGCACTATCCACTGCCTCCGCCCGGTGACAGCCGCCGGCGAAGCTTTAGTGCTGTG
JMSF046N16+ GAGCAGCACTATCCACTGCCTCCGCCCGGTGACAGCCGCCGGCGAAGCTTTAGTGCTGTG
rJMSF046N16- GAGCAGCACTATCCACTGCCTCCGCCCGGTGACAGCCGCCGGCGAAGCTTTAGTGCTGTG
____________________________________________________________
consensus GAGCAGCACTATCCACTGCCTCCGCCCGGTGACAGCCGCCGGCGAAGCTTTAGTGCTGTG
. : . : . : . : . : . :
rJMSF020L12- CGGCTTGCCGGAAGTAGCATCGGCGGCGATACGCATGCAGCGAACTGGAAATGTCGGCGC
JMFF036I24+ CGGCTTGCCGGAAGTAGCATCGGCGGCGATACGCATGCAGCGAACTGGAAATGTCGGCGC
rJMFF036I24- CGGCTTGCCGGAAGTAGCATCGGCGGCGATACGCATGCAGCGAACTGGAAATGTCGGCGC
JMFN001E07+ CGGCTTGCCGGAAGTAGCATCGGCGGCGATACGCATGCAGCGAACTGGAAATGTCGGCGC
JMSF020L12+ CGGCTTGCCGGAAGTAGCATCGGCGGCGATACGCATGCAGCGAACTGGAAATGTCGGCGC
JMSF046N16+ CGGCTTGCCGGAAGTAGCATCGGCGGCGATACGCATGCAGCGAACTGGAAATGTCGGCGC
rJMSF046N16- CGGCTTGCCGGAAGTAGCATCGGCGGCGATACGCATGCAGCGAACTGGAAATGTCGGCGC
____________________________________________________________
consensus CGGCTTGCCGGAAGTAGCATCGGCGGCGATACGCATGCAGCGAACTGGAAATGTCGGCGC
. : . : . : . : . : . :
rJMSF020L12- GAGAATTGAGCTTGCGGAAGCCATGGCAACTGCCAGTCTCTATGCAATCAAACT
JMFF036I24+ GAGAATTGAGCTTGCGGAAGCCAT
rJMFF036I24- GAGAATTGAGCTTGCGGAAGCCAT
JMFN001E07+ GAGAATTGAGCTTGCGGAAGCCATGGCAACTGCCAGTC
JMSF020L12+ GAGAATTGAGCTTGCGGAAGCCATGGCAACTGCCAGTCTCTATGCAATCAAACT
JMSF046N16+ GAGAATTGAGCTTGCGGAAGCCATGGCAACTGCCAGTCTCTATGCAATCAAACT
rJMSF046N16- GAGAATTGAGCTTGCGGAAGCCATGGCAACTGCCAGTCTCTATGCAATCAAACTGATACC
____________________________________________________________
consensus GAGAATTGAGCTTGCGGAAGCCATGGCAACTGCCAGTCTCTATGCAATCAAACTGATACC