| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF041O11 | Sequence | 748 | 000920 (5) | ref|XP_009592595.1| | 1e-99 | PREDICTED: DNA polymerase delta catalytic subunit [Nicotiana tomentosiformis] | 708 | 002968 (3) | ref|XP_007212871.1| | 1e-83 | hypothetical protein PRUPE_ppa021601mg, partial [Prunus persica] gb|EMJ14070.1| |
| JMSF042E14 | Sequence | 830 | 000920 (5) | ref|XP_009592595.1| | 6e-98 | PREDICTED: DNA polymerase delta catalytic subunit [Nicotiana tomentosiformis] | 800 | 002968 (3) | ref|XP_007212871.1| | 5e-115 | hypothetical protein PRUPE_ppa021601mg, partial [Prunus persica] gb|EMJ14070.1| |
| JMSF044A24 | Sequence | 690 | 000920 (5) | ref|XP_009592595.1| | 9e-87 | PREDICTED: DNA polymerase delta catalytic subunit [Nicotiana tomentosiformis] | 303 | 002968 (3) | |||
This contig is upended
. : . : . : . : . : . :
rJMSF042E14+ AGCGGATGCGCNAGCGAGATGCTGCTACTGCTCCAAATATGGGTG
____________________________________________________________
consensus AGCGGATGCGCNAGCGAGATGCTGCTACTGCTCCAAATATGGGTG
. : . : . : . : . : . :
rJMSF042E14+ ATAGAGTACCTTATGTCATTGTTAAGGGTGCTAAAGGTGCTAAGGCTTATGAAAAATCAG
rJMSF041O11+ TCAG
____________________________________________________________
consensus ATAGAGTACCTTATGTCATTGTTAAGGGTGCTAAAGGTGCTAAGGCTTATGAAAAATCAG
. : . : . : . : . : . :
rJMSF042E14+ AGGATCCTATATATGTCTTAGAAAACAACATT-CCAATAGATCCACAGTACTATCTTGAA
rJMSF041O11+ AGGATCCTATATATGTCTTAGAAAACANCATTCCCAATAGATCCACAGTACTATCTTGAA
____________________________________________________________
consensus AGGATCCTATATATGTCTTAGAAAACAACATTCCCAATAGATCCACAGTACTATCTTGAA
. : . : . : . : . : . :
rJMSF042E14+ AATCAGATTAGCAAGCCACTTCTAAGGATATTTGAGCCCATATTGAAGAATGCCAGTAAA
rJMSF041O11+ AATCAGATTAGCAAGCCACTTCTAAGGATATTTGAGCCCATATTGAAGAATGCCAGTAAA
____________________________________________________________
consensus AATCAGATTAGCAAGCCACTTCTAAGGATATTTGAGCCCATATTGAAGAATGCCAGTAAA
. : . : . : . : . : . :
rJMSF042E14+ GAGCTTCTGCATGGAAGCCATACTAGATCGATCTCCATTTCAACTCCTTCCACCGGTGGC
rJMSF041O11+ GAGCTTCTGCATGGAAGCCATACTAGATCGATCTCCATTTCAACTCCTTCCACCGGTGGC
____________________________________________________________
consensus GAGCTTCTGCATGGAAGCCATACTAGATCGATCTCCATTTCAACTCCTTCCACCGGTGGC
. : . : . : . : . : . :
rJMSF042E14+ ATAATGAAATTTGCCAAAAAACAATTAACTTGCATTGGATGCAAGGCACTAATCAGTGAA
rJMSF041O11+ ATAATGAAATTTGCCAAAAAACAATTAACTTGCATTGGATGCAAGGCACTAATCAGTGAA
____________________________________________________________
consensus ATAATGAAATTTGCCAAAAAACAATTAACTTGCATTGGATGCAAGGCACTAATCAGTGAA
. : . : . : . : . : . :
rJMSF042E14+ TCAGATCGAACTCTGTGCAAGCACTGCAAGGGAAGAGAAGCTGAACTTTATTGTAGATCA
rJMSF041O11+ TCAGATCGAACTCTGTGCAAGCACTGCAAGGGAAGAGAAGCTGAACTTTATTGTAGATCA
____________________________________________________________
consensus TCAGATCGAACTCTGTGCAAGCACTGCAAGGGAAGAGAAGCTGAACTTTATTGTAGATCA
. : . : . : . : . : . :
rJMSF042E14+ GTTGCAAATGTGGCTGAACTAGAGAAGCTGTTTGGGAGGTTGTGGACACAGTGCCAAGAG
rJMSF041O11+ GTTGCAAATGTGGCTGAACTAGAGAAGCTGTTTGGGAGGTTGTGGACACAGTGCCAAGAG
____________________________________________________________
consensus GTTGCAAATGTGGCTGAACTAGAGAAGCTGTTTGGGAGGTTGTGGACACAGTGCCAAGAG
. : . : . : . : . : . :
rJMSF042E14+ TGTCAAGGCTCGCTTCATCAGGACGTGCTGTGCACCAGTCGAGACTGTCCCATCTTTTAT
rJMSF041O11+ TGTCAAGGCTCGCTTCATCAGGACGTGCTGTGCACCAGTCGAGACTGTCCCATCTTTTAT
____________________________________________________________
consensus TGTCAAGGCTCGCTTCATCAGGACGTGCTGTGCACCAGTCGAGACTGTCCCATCTTTTAT
. : . : . : . : . : . :
rJMSF042E14+ CGAAGGAAGAAAGCGCAGAAAGACATGGCGTAAGCCAAGGTCCAATTAGATCGGTGGAGC
rJMSF041O11+ CGAAGGAAGAAAGCGCAGAAAGACATGGCGTAAGCCAAGGTCCAATTAGATCGGTGGAGC
____________________________________________________________
consensus CGAAGGAAGAAAGCGCAGAAAGACATGGCGTAAGCCAAGGTCCAATTAGATCGGTGGAGC
. : . : . : . : . : . :
rJMSF042E14+ TTCTAGTATCTCACATGGGGGTCTCTGAATATGAGACCTCATCTTTACGTACAGTACACT
rJMSF041O11+ TTCTAGTATCTCACATGGGGGTCTCTGAATATGAGACCTCATCTTTACGTACAGTACACT
rJMSF044A24+ ACT
____________________________________________________________
consensus TTCTAGTATCTCACATGGGGGTCTCTGAATATGAGACCTCATCTTTACGTACAGTACACT
. : . : . : . : . : . :
rJMSF042E14+ TAAGTACTGATGTAGAAAGCTTTTTACAAGCTCTAATAGTTAGGTTTATAAAAAAACCAG
rJMSF041O11+ TAAGTACTGATGTAGAAAGCTTTTTACAAGCTCTAATAGTTAGGTTTATAAAAAAACCAG
rJMSF044A24+ TAAGTACTGATGTAGAAAGCTTTTTACNAGCTNTAATAGNTAGGNTTATAAAAAAACCNG
____________________________________________________________
consensus TAAGTACTGATGTAGAAAGCTTTTTACAAGCTCTAATAGTTAGGTTTATAAAAAAACCAG
. : . : . : . : . : . :
rJMSF042E14+ GGAAGTTCAGGGTTAGTAAACCAAACTTTACATTTGAGCACTTGTGTCTCAAGTTTTCTG
rJMSF041O11+ GGAAGTTCAGGGTTAGTAAACCAAACTTTACATTTGAGCACTTGTGTCTCAAGTTTTCTG
rJMSF044A24+ GGAAGTTCNGGGNTAGTAAACCNAACTTTACNTTTGAGCNCTTGNGTNTCAAGTTTTCTG
____________________________________________________________
consensus GGAAGTTCAGGGTTAGTAAACCAAACTTTACATTTGAGCACTTGTGTCTCAAGTTTTCTG
. : . : . : . : . : . :
rJMSF042E14+ TGCATTTTTTGCTCTAAAGTTATATTTTTATTCTTT
rJMSF041O11+ TGCATTTTTTGCTCTAAAGTTATATTTTTATTCTTT
rJMSF044A24+ NGCNTTTTTTGCTCTAAAGNTATATTTTTATTCTTTTTATTTATTTATTAAAATCCNATA
____________________________________________________________
consensus TGCATTTTTTGCTCTAAAGTTATATTTTTATTCTTTTTATTTATTTATTAAAATCCNATA
. : . : . : . : . : . :
rJMSF044A24+ TGTATCTTGTTACNTGCNCCNAACNCTTAACTTTTAAGGGTTTTTTTTTTTGCAACTCTA
____________________________________________________________
consensus TGTATCTTGTTACNTGCNCCNAACNCTTAACTTTTAAGGGTTTTTTTTTTTGCAACTCTA
. : . : . : . : . : . :
rJMSF044A24+ ACTTTTAGGCGTCCAAAGTCATTTCACACTCTAACTTTTACCGGGTTGTTTGGAATGTAT
____________________________________________________________
consensus ACTTTTAGGCGTCCAAAGTCATTTCACACTCTAACTTTTACCGGGTTGTTTGGAATGTAT