Contig 002967:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF042M10Sequence842014740gb|AGC24022.1|4e-73coat protein, partial [Rhabdovirus YHG-2013]740002967 (2)gb|AFK43045.1|2e-15unknown [Lotus japonicus]
JMSF043P10Sequence694015836ref|XP_010677176.1|121PREDICTED: uncharacterized protein LOC104892855 [Beta vulgaris subsp. vulgaris]605002967 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF042M10+ GCTGAGTGTGACACTCAACGTGCGCA
                      ____________________________________________________________
consensus GCTGAGTGTGACACTCAACGTGCGCA
 
. : . : . : . : . : . :
rJMSF042M10+ GTTCAAAGATCTTACAGGCACTGCACACTGGGGAATTTGCTAAACAGACAAACGCTCTGG
                      ____________________________________________________________
consensus GTTCAAAGATCTTACAGGCACTGCACACTGGGGAATTTGCTAAACAGACAAACGCTCTGG
 
. : . : . : . : . : . :
rJMSF042M10+ CTGAAATGGTTAGAATGATGACGTCTAAAGAGCCGGCCTATGCAAGGAGGATGTGAGATT
                      ____________________________________________________________
consensus CTGAAATGGTTAGAATGATGACGTCTAAAGAGCCGGCCTATGCAAGGAGGATGTGAGATT
 
. : . : . : . : . : . :
rJMSF042M10+ TGGAAGAATCTTTAATGAGAATTTCATGAGTAGTCTTCGGACCAAAGCGTGCCCGAGATT
                      ____________________________________________________________
consensus TGGAAGAATCTTTAATGAGAATTTCATGAGTAGTCTTCGGACCAAAGCGTGCCCGAGATT
 
. : . : . : . : . : . :
rJMSF042M10+ TGTGTACATATTAGCCAGCATGTTGAAGAGAGAGGACCCTGCAAAATGTGGGAATATCCT
                      ____________________________________________________________
consensus TGTGTACATATTAGCCAGCATGTTGAAGAGAGAGGACCCTGCAAAATGTGGGAATATCCT
 
. : . : . : . : . : . :
rJMSF042M10+ TCATATTGTACCTCTTAGCAGCTTAAGTGAAGATATCAAGCTGAGATGTCAGGCCGTTGC
                      ____________________________________________________________
consensus TCATATTGTACCTCTTAGCAGCTTAAGTGAAGATATCAAGCTGAGATGTCAGGCCGTTGC
 
. : . : . : . : . : . :
rJMSF042M10+ CAAGATGCTGTTAAACCAAATTCGTAACCCTGTTACTCTCCCAATTCAACAAATCGAAGA
rJMSF043P10+ AATCGAAGA
                      ____________________________________________________________
consensus CAAGATGCTGTTAAACCAAATTCGTAACCCTGTTACTCTCCCAATTCAACAAATCGAAGA
 
. : . : . : . : . : . :
rJMSF042M10+ TGATAGTGTACCCAAAGGGGTGGAACCAGATTATGAGAGGGATTTGAAAGAGCTGGGTAA
rJMSF043P10+ TGATAGTGTACCCAANGGGGAGGAACCAGATTATGAGAGGGATTTGAAAGATTTGGGTAA
                      ____________________________________________________________
consensus TGATAGTGTACCCAAAGGGGTGGAACCAGATTATGAGAGGGATTTGAAAGATTTGGGTAA
 
. : . : . : . : . : . :
rJMSF042M10+ GTGCTGTGAAACCGTGGCAGACGCCATCACAAACTTAGAAAGAAATATCACAGAAGTGTC
rJMSF043P10+ GTGCTGTGCAACCGTGGCCGTCGCCATCATAAACTTAAAAAGAAATATCACAGAAGTGTC
                      ____________________________________________________________
consensus GTGCTGTGCAACCGTGGCCGTCGCCATCATAAACTTAGAAAGAAATATCACAGAAGTGTC
 
. : . : . : . : . : . :
rJMSF042M10+ TAAAAAATACCCAGACTCGCCACAAGTAAACCGTTATAAGGAAATGGCTACT---ATTTT
rJMSF043P10+ AGAAAAATACCCAGACTCGGCACAAGTAAACAGGGTTAAGGCAATGGCTACTACAATTTT
                      ____________________________________________________________
consensus TGAAAAATACCCAGACTCGGCACAAGTAAACCGTTTTAAGGCAATGGCTACTACAATTTT
 
. : . : . : . : . : . :
rJMSF042M10+ GATGGGTCACAGCTCTTTAACCCAAAAGGCTAACCAGCTTAAGGCCATGGCTGCTAACGA
rJMSF043P10+ TATGGGTAACAGCTCTTTAACCCAAAAGATTAACCAGCTTAAGTCCATGGCTACT----A
                      ____________________________________________________________
consensus TATGGGTCACAGCTCTTTAACCCAAAAGGTTAACCAGCTTAAGTCCATGGCTGCTAACGA
 
. : . : . : . : . : . :
rJMSF042M10+ TACTTGTGGATAAAACTTCTGGCACCAAACAGTTTGAGGTAAGTTAGATTGTCACTCAAG
rJMSF043P10+ CACTTGTGGATAAAACTTCTGGCACCAAACAGTTTGAGGTCAGTCAGATTGTCACTCAAG
                      ____________________________________________________________
consensus TACTTGTGGATAAAACTTCTGGCACCAAACAGTTTGAGGTCAGTTAGATTGTCACTCAAG
 
. : . : . : . : . : . :
rJMSF042M10+ ATGAGTGTTTGTTTGCATAAATGGATTGATTGTT
rJMSF043P10+ ATGAATGTACCTTTGCATAAATGGATTGATTGTTCATCATAGAAACAGAATGGTAGTCAA
                      ____________________________________________________________
consensus ATGAGTGTTTGTTTGCATAAATGGATTGATTGTTCATCATAGAAACAGAATGGTAGTCAA
 
. : . : . : . : . : . :
rJMSF043P10+ TATTTTGTAGGAAATGATTCTTGCCTCTTGAATTTTCCCTCATATTTTCCCTCTTGATGT
                      ____________________________________________________________
consensus TATTTTGTAGGAAATGATTCTTGCCTCTTGAATTTTCCCTCATATTTTCCCTCTTGATGT
 
. : . : . : . : . : . :
rJMSF043P10+ GGGTGGCATCCATTCATTGGGTGTCCATGAATTGGTGAGTCACCACTAATTAAAAAGAGA
                      ____________________________________________________________
consensus GGGTGGCATCCATTCATTGGGTGTCCATGAATTGGTGAGTCACCACTAATTAAAAAGAGA
 
. : . : . : . : . : . :
rJMSF043P10+ ATTTAGTATTTAATTAGATAATGTCATATTAATAGGGATGGGATGGATTAGAGGGAAAAA
                      ____________________________________________________________
consensus ATTTAGTATTTAATTAGATAATGTCATATTAATAGGGATGGGATGGATTAGAGGGAAAAA
 
. : . : . : . : . : . :
rJMSF043P10+ TATGAGTGATCTAGCATTACTTTATTTTGTATTTATACCGTTTGACTGAAAATATGATCT
                      ____________________________________________________________
consensus TATGAGTGATCTAGCATTACTTTATTTTGTATTTATACCGTTTGACTGAAAATATGATCT