Contig 002961:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF034O19Sequence598007965 (2)ref|XP_007051762.1|1e-12ARID/BRIGHT DNA-binding domain,ELM2 domain protein, putative isoform 3 [Theobro702002961 (2)ref|XP_009783361.1|3e-47PREDICTED: AT-rich interactive domain-containing protein 1-like [Nicotiana sylv
JMSF043D18Sequence739007965 (2)ref|XP_009762716.1|3e-34PREDICTED: AT-rich interactive domain-containing protein 1-like [Nicotiana sylv771002961 (2)ref|XP_009617230.1|2e-57PREDICTED: AT-rich interactive domain-containing protein 1-like [Nicotiana tome

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF034O19+ T
rJMSF043D18+ GGAAGNCAAGATACATGTGGTTGCCCAATCCCGGGTTCCTATACGTGTGTT
                      ____________________________________________________________
consensus GGAAGNCAAGATACATGTGGTTGCCCAATCCCGGGTTCCTATACGTGTGTT
 
. : . : . : . : . : . :
rJMSF034O19+ AAATTTCACATTACCGAGAAAAGGTCGAAGGTTGAAAATGAGTTGGGCTCGGCTTTTAAA
rJMSF043D18+ AAATTTCACATTACCGAGAAAAGGTCGAAGGTTGAAAATGAGTTGGGCTCGGCTTTTAAA
                      ____________________________________________________________
consensus AAATTTCACATTACCGAGAAAAGGTCGAAGGTTGAAAATGAGTTGGGCTCGGCTTTTAAA
 
. : . : . : . : . : . :
rJMSF034O19+ CTATGGAAACTCGATTCTGCTGGTGATGAAGTTGCAAACTCTTGGACCAAAGAAGAAGAA
rJMSF043D18+ CTATGGAAACTCGATTCTGCTGGTGATGAAGTTGCAAACTCTTGGACCAAAGAAGAAGAA
                      ____________________________________________________________
consensus CTATGGAAACTCGATTCTGCTGGTGATGAAGTTGCAAACTCTTGGACCAAAGAAGAAGAA
 
. : . : . : . : . : . :
rJMSF034O19+ AAGAAATTTGAGGATATAGTAAAATCTCAATCACCTAGCAAGTGTTTCTGGGATGAAATT
rJMSF043D18+ AAGAAATTTGAGGATATAGTAAAATCTCAATCACCTAGCAAGTGTTTCTGGGATGAAATT
                      ____________________________________________________________
consensus AAGAAATTTGAGGATATAGTAAAATCTCAATCACCTAGCAAGTGTTTCTGGGATGAAATT
 
. : . : . : . : . : . :
rJMSF034O19+ TTTAAGGAGTTCCCTACCAAGAGTAGGGACTCTTTGGTAAGCTATCACTTCAATGTTTTC
rJMSF043D18+ TTTAAGGAGTTCCCTACCAAGAGTAGGGACTCTTTGGTAAGCTATCACTTCAATGTTTTC
                      ____________________________________________________________
consensus TTTAAGGAGTTCCCTACCAAGAGTAGGGACTCTTTGGTAAGCTATCACTTCAATGTTTTC
 
. : . : . : . : . : . :
rJMSF034O19+ CTTCTCAGACGCCGAGGTCACCAGAATAGGTTCACTCCTACAGAAATTGACAGTGATGAT
rJMSF043D18+ CTTCTCAGACGCCGAGGTCACCAGAATAGGTTCACTCCTACAGAAATTGACAGTGATGAT
                      ____________________________________________________________
consensus CTTCTCAGACGCCGAGGTCACCAGAATAGGTTCACTCCTACAGAAATTGACAGTGATGAT
 
. : . : . : . : . : . :
rJMSF034O19+ GATGAATCACGGTATGGTCCCAGGACAAAATCATTTGGACGGGAAGTTGTTAAGTCTTCA
rJMSF043D18+ GATGAATCACGGTATGGTCCCAGGACAAAATCATTTGGACGGGAAGTTGTTAAGTCTTCA
                      ____________________________________________________________
consensus GATGAATCACGGTATGGTCCCAGGACAAAATCATTTGGACGGGAAGTTGTTAAGTCTTCA
 
. : . : . : . : . : . :
rJMSF034O19+ AACTCAATATTTTGTTCCCCAGCGAAAGCACCTCAGGATACCTGATAGGCCTTAGAGTTT
rJMSF043D18+ AACTCAATATTTTGTTCCCCAGCGAAAGCACCTCAGGATACCTGATAGGCCTTAGAGTTT
                      ____________________________________________________________
consensus AACTCAATATTTTGTTCCCCAGCGAAAGCACCTCAGGATACCTGATAGGCCTTAGAGTTT
 
. : . : . : . : . : . :
rJMSF034O19+ CATTATCTTCAATGGAATGGTTCACAACTGTAAATTGCAGAAGTCTCTCAGTGGTCTTAC
rJMSF043D18+ CATTATCTTCAATGGAATGGTTCACAACTGTAAATTGCAGAAGTCTCTCAGTGGTCTTAC
                      ____________________________________________________________
consensus CATTATCTTCAATGGAATGGTTCACAACTGTAAATTGCAGAAGTCTCTCAGTGGTCTTAC
 
. : . : . : . : . : . :
rJMSF034O19+ TGTTCAGCAAGTTTTTGTGGGAATTGGTTTGGGGTTGCTGATGCAAATATACAAGGCCAT
rJMSF043D18+ TGTTCAGCAAGTTTTTGTGGGAATTGGTTTGGGGTTGCTGATGCAAATATACAAGGCCAT
                      ____________________________________________________________
consensus TGTTCAGCAAGTTTTTGTGGGAATTGGTTTGGGGTTGCTGATGCAAATATACAAGGCCAT
 
. : . : . : . : . : . :
rJMSF034O19+ GACAAAATTGTATAATTGGGCATTAAAACGTGCCCTTTTGCTGGATAGCTTTCCTTTTAA
rJMSF043D18+ GACAAAATTGTATAATTGGGCATTAAAACGTGCCCTTTTGCTGGATAGCTTTCCTTTTAA
                      ____________________________________________________________
consensus GACAAAATTGTATAATTGGGCATTAAAACGTGCCCTTTTGCTGGATAGCTTTCCTTTTAA
 
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rJMSF034O19+ TACTCATCCTGATAACAGGAGGAAATTTTTGCTTTATTTTCATGGCTCCCATAGTTTACA
rJMSF043D18+ TACTCATCCTGATAACAGGAGGAAATTTTTGCTTTATTTTCATGGCTCCCATAGTTTACA
                      ____________________________________________________________
consensus TACTCATCCTGATAACAGGAGGAAATTTTTGCTTTATTTTCATGGCTCCCATAGTTTACA
 
. : . : . : . : . : . :
rJMSF034O19+ GTTTTACAACAGTGTCAGCTCATTAGTGAGTTACTGTACAT
rJMSF043D18+ GTTTTACAACAGTGTCAGCTCATTAGTGAGTTACTGTACATTGTTTTTGTCATTTGAAAC
                      ____________________________________________________________
consensus GTTTTACAACAGTGTCAGCTCATTAGTGAGTTACTGTACATTGTTTTTGTCATTTGAAAC