| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF015I14 | Sequence | 570 | 013499 (5) | emb|CDP15584.1| | 1e-84 | unnamed protein product [Coffea canephora] | 748 | 002948 (3) | ref|XP_009605893.1| | 2e-36 | PREDICTED: outer envelope protein 61 [Nicotiana tomentosiformis] |
| JMSF035N15 | Sequence | 623 | 013499 (5) | emb|CDP15584.1| | 7e-53 | unnamed protein product [Coffea canephora] | 663 | 002948 (3) | ref|XP_009605893.1| | 2e-53 | PREDICTED: outer envelope protein 61 [Nicotiana tomentosiformis] |
| JMSF039O23 | Sequence | 689 | 013499 (5) | emb|CDP15584.1| | 2e-50 | unnamed protein product [Coffea canephora] | 816 | 002948 (3) | ref|XP_009605893.1| | 4e-51 | PREDICTED: outer envelope protein 61 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF039O23+ CTGCTGCAGCATCCAATTCTAATGAACAGTTGAGAG
____________________________________________________________
consensus CTGCTGCAGCATCCAATTCTAATGAACAGTTGAGAG
. : . : . : . : . : . :
rJMSF015I14+ GGTACTAGTAGCTCATCCC
rJMSF039O23+ CTCAAGAGACTCGTGAAAATTTCAAAGTGGATGATAACATTGGTACTAGTAGCTCATCCC
____________________________________________________________
consensus CTCAAGAGACTCGTGAAAATTTCAAAGTGGATGATAACATTGGTACTAGTAGCTCATCCC
. : . : . : . : . : . :
rJMSF035N15+ TTATCAAGCTCAGCTGCTGATC
rJMSF015I14+ AGGGACTNCTNAATTCTAGAAATGGTTCTAACTCTGGNTTATCAAGCTCAGCTGCTGATC
rJMSF039O23+ AGGGACTTCTAAATTCTAGAAATGGTTCTAACTCTGGTTTATCAAGCTCAGCTGCTGATC
____________________________________________________________
consensus AGGGACTTCTAAATTCTAGAAATGGTTCTAACTCTGGTTTATCAAGCTCAGCTGCTGATC
. : . : . : . : . : . :
rJMSF035N15+ TGCAAGAACAAATGAGAAACCAAATGAACGATCCAGCTATGCGGCAGATGTTCTCCTCCA
rJMSF015I14+ TGCAAGAACANATGAGNAACCAAATGAACGATCCAGCTATGCGGCAGATGTTCTCCTCCA
rJMSF039O23+ TGCAAGAACAAATGAGAAACCAAATGAACGATCCAGCTATGCGGCAGATGTTCTCCTCCA
____________________________________________________________
consensus TGCAAGAACAAATGAGAAACCAAATGAACGATCCAGCTATGCGGCAGATGTTCTCCTCCA
. : . : . : . : . : . :
rJMSF035N15+ TGGTTAAAAACATGAGCCCAGATATGATGGCTAACATGAGCAAACAATTTGGACTTAATC
rJMSF015I14+ TGGTTANAAACATGAGCCCAGATATGNTGGCTAACATGAGCANACAATNTGGNCTTAATC
rJMSF039O23+ TGGTTAAAAACATGAGCCCAGATATGATGGCTAACATGAGCAAACAATTTGGACTTAATC
____________________________________________________________
consensus TGGTTAAAAACATGAGCCCAGATATGATGGCTAACATGAGCAAACAATTTGGACTTAATC
. : . : . : . : . : . :
rJMSF035N15+ TTTCTCAGGAGGATGCAGAAAAAGCTCAGCAGGCCATGTCATCTTTATCACCGGATGACT
rJMSF015I14+ TTTCTCAGGAGGANGCAGAAAAAGCTCAGCAGGCCATNTCATCTTTATCNCCGGATGACT
rJMSF039O23+ TTTCTCAGGAGGATGCAGAAAAAGCTCAGCAGGCCATGTCATCTTTATCACCGGATGACT
____________________________________________________________
consensus TTTCTCAGGAGGATGCAGAAAAAGCTCAGCAGGCCATGTCATCTTTATCACCGGATGACT
. : . : . : . : . : . :
rJMSF035N15+ TGGAAAAAATGATGAAATGGGTAGATAGATTTCAAAGAGGAGTCGAGGGTGCCAAAAGGA
rJMSF015I14+ TGGAAAAAATGATGAAATGGGTAGATAGATTTCAAAGAGGAGTCGAGGGTGCCAAAAGGA
rJMSF039O23+ TGGAAAAAATGATGAAATGGGTAGATAGATTTCAAAGAGGAGTCGAGGGTGCCAAAAGGA
____________________________________________________________
consensus TGGAAAAAATGATGAAATGGGTAGATAGATTTCAAAGAGGAGTCGAGGGTGCCAAAAGGA
. : . : . : . : . : . :
rJMSF035N15+ CGAAAAATTGGCTTTTGGGAAAGCCTGGTATGATCTTGGCAATACTTATGTTGCTCTTGG
rJMSF015I14+ CGAAAAATTGGCTTTTGGGAAAGCCTGGTATNATCTTGGCAATACTTNTGTTGCTCTTGG
rJMSF039O23+ CGAAAAATTGGCTTTTGGGAAAGCCTGGTATGATCTTGGCAATACTTATGTTGCTCTTGG
____________________________________________________________
consensus CGAAAAATTGGCTTTTGGGAAAGCCTGGTATGATCTTGGCAATACTTATGTTGCTCTTGG
. : . : . : . : . : . :
rJMSF035N15+ CCATCCTCCTCCACTGGCTGGGCTTCATAGGCCATTAGTTTTGACATGCTACAATAAGCT
rJMSF015I14+ CCATCCTCCTCCACTGGCTGGGCTTCATAGGCCNTTAGTTCTGACATGCTACNATAAGCN
rJMSF039O23+ CCATCCTCCTCCACNGGCTGGGCTTCATAGGCCATTAGTTTTGACATGCTACAATAAGCT
____________________________________________________________
consensus CCATCCTCCTCCACTGGCTGGGCTTCATAGGCCATTAGTTTTGACATGCTACAATAAGCT
. : . : . : . : . : . :
rJMSF035N15+ GAAGACCGGCAGAAGTGCCAGTCATCAGGCTCACATAATTGGCTCTTTAAGGCTGTCTTT
rJMSF015I14+ GAAGACCGGCAGAAGTGCCAGTCATCNGGCTCACATAATNGNCTCTTTAAGGCTGTCTNT
rJMSF039O23+ GAAGACCGGCAGAAGTGCCAGTCATCAGGCTCACATAATTGGCTCTTTAAGGCTGTCTTT
____________________________________________________________
consensus GAAGACCGGCAGAAGTGCCAGTCATCAGGCTCACATAATTGGCTCTTTAAGGCTGTCTTT
. : . : . : . : . : . :
rJMSF035N15+ GTCGTGCATCATCACCTTGTTAGTCTTGGCAGAAACTAGGTTGGAATTTTGAAGGCCATC
rJMSF015I14+ GTCGTGCATCATCACCTNGTTANTCTTGGCAGAAACTNGGTTGGAATTTTGAAGGCCATC
rJMSF039O23+ GTCGTGCATCATCACCTTGTTAGTCTTGGCAGAAACTAGGTTGGAATTTTGAAGGCCATC
____________________________________________________________
consensus GTCGTGCATCATCACCTTGTTAGTCTTGGCAGAAACTAGGTTGGAATTTTGAAGGCCATC
. : . : . : . : . : . :
rJMSF035N15+ TGAAATGATCTCAGTCAGTATTTCTGGAATGTGTTAAATGATGCATTTGGAGACTGCATA
rJMSF015I14+ TGAANTNATCTCAGTCAGTNTTTCTGGAATGTGTTAAATGATGCATTTGGANACTGCATA
rJMSF039O23+ TGAAATGATCTCAGTCAGTATTTCTGGAATGTGTTAAATGATGCATTTGGAGACTGCATA
____________________________________________________________
consensus TGAAATGATCTCAGTCAGTATTTCTGGAATGTGTTAAATGATGCATTTGGAGACTGCATA
. : . : . : . : . : . :
rJMSF035N15+ TTGTTAATGTCTTGTGTTTTTGGTTGATGTAGCTTCTGTGACTCGATGAAATTGTTTAAT
rJMSF015I14+ TTGTNAATGTCTTGTGTTTTTGGTTGATGTAGCTTCTGNGACTCGATGAAATNGTTTAAT
rJMSF039O23+ TTGTTAATGTCTTGTGTTTTTGGTTGATGTAGCTTCTGTGACTCGATGAAATTGTTTAAT
____________________________________________________________
consensus TTGTTAATGTCTTGTGTTTTTGGTTGATGTAGCTTCTGTGACTCGATGAAATTGTTTAAT
. : . : . : . : . : . :
rJMSF035N15+ T-CTTTGTTCTGGATATTGTAGAAAATAACC
rJMSF015I14+ T-CTTTGTTCNGGATATNGTAGAAAATAACC
rJMSF039O23+ TGCTTTGTTCTGGATATTGTAGAAAATAACCCTTANCTATTGTAAACCATTTTACTTCGT
____________________________________________________________
consensus T-CTTTGTTCTGGATATTGTAGAAAATAACCCTTANCTATTGTAAACCATTTTACTTCGT