Contig 002945:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003H02Sequence355004928 (2)658002945 (3)emb|CDP06508.1|2e-58unnamed protein product [Coffea canephora]
JMSF039L02Sequence658008090 (3)ref|XP_003516943.1|181PREDICTED: uncharacterized protein LOC100780899 [Glycine max]847002945 (3)gb|KJB17031.1|7e-103hypothetical protein B456_002G261700 [Gossypium raimondii] gb|KJB17035.1| hypoth
JMSF050F09Sequence677008090 (3)ref|XP_003516943.1|174PREDICTED: uncharacterized protein LOC100780899 [Glycine max]738002945 (3)gb|KJB17031.1|7e-97hypothetical protein B456_002G261700 [Gossypium raimondii] gb|KJB17035.1| hypoth

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF039L02+ GTTGAGA
                      ____________________________________________________________
consensus GTTGAGA
 
. : . : . : . : . : . :
rJMSF050F09+ AAGGGTTATGGATAGACTTCCTGAAGCTCGGATAGCTTTCA
rJMSF039L02+ AGAGCTTGGATTTCCTTAAAAGGGTTATGGATAGACTTCCTGAAGCTCGGATAGCTTTCA
                      ____________________________________________________________
consensus AGAGCTTGGATTTCCTTAAAAGGGTTATGGATAGACTTCCTGAAGCTCGGATAGCTTTCA
 
. : . : . : . : . : . :
rJMSF050F09+ TAGGCGATGGACCATACAGGGAGGAACTGGAGGAATTGTTCTCTGGCATGCCTGCTGTGT
rJMSF039L02+ TAGGCGATGGACCATACAGGGAGGAACTGGAGGAATTGTTCTCTGGCATGCCTGCTGTGT
                      ____________________________________________________________
consensus TAGGCGATGGACCATACAGGGAGGAACTGGAGGAATTGTTCTCTGGCATGCCTGCTGTGT
 
. : . : . : . : . : . :
rJMSF050F09+ TCACGGGTACGCTACAAGGGGAGGAGCTATCTCGGGCATACGCCAGTGGGGACGTTTTCG
rJMSF003H02+ G
rJMSF039L02+ TCACGGGTACGCTACAAGGGGAGGAGCTATCTCGGGCATACGCCAGTGGGGACGTTTTCG
                      ____________________________________________________________
consensus TCACGGGTACGCTACAAGGGGAGGAGCTATCTCGGGCATACGCCAGTGGGGACGTTTTCG
 
. : . : . : . : . : . :
rJMSF050F09+ TAATGCCTTCAGAATCCGAGACACTTGGCCTCGTTGTTCTAGAGGCCATGTCTTCTGGAA
rJMSF003H02+ TAATGCCTTCAGAATCCGAGACACTNGGCCTCGTTGNTCTAGAGGCCATGTCTTCTGGAA
rJMSF039L02+ TAATGCCTTCAGAATCCGAGACACTTGGCCTCGTTGTTCTAGAGGCCATGTCTTCTGGAA
                      ____________________________________________________________
consensus TAATGCCTTCAGAATCCGAGACACTTGGCCTCGTTGTTCTAGAGGCCATGTCTTCTGGAA
 
. : . : . : . : . : . :
rJMSF050F09+ TTCCCGTGGTGGCTGCTCGTGCAGGAGGAATTCCCGATATCATTCCAGATGACCAGGATG
rJMSF003H02+ TTCCCGTGGTGGCTGCTCGTGCAGGAGGAATTCCCGATATCATTCCAGATGACCAGGATG
rJMSF039L02+ TTCCCGTGGTGGCTGCTCGTGCAGGAGGAATTCCCGATATCATTCCAGATGACCAGGATG
                      ____________________________________________________________
consensus TTCCCGTGGTGGCTGCTCGTGCAGGAGGAATTCCCGATATCATTCCAGATGACCAGGATG
 
. : . : . : . : . : . :
rJMSF050F09+ GCAAGATTAGCTACCTGTTTAATCCCGGGGACCTCGATGACTGCTTGAGTAAACTGGGGC
rJMSF003H02+ GCAAGATTAGCTACCTGTTTAATCCCGGGGACCTCGATGACTGCTTGAGTAAACTGGGGC
rJMSF039L02+ GCAAGATTAGCTACCTGTTTAATCCCGGGGACCTCGATGACTGCTTGAGTAAACTGGGGC
                      ____________________________________________________________
consensus GCAAGATTAGCTACCTGTTTAATCCCGGGGACCTCGATGACTGCTTGAGTAAACTGGGGC
 
. : . : . : . : . : . :
rJMSF050F09+ CTCTTTTGCGTGATCGTGACCTGAGAGAAACAATGGGCAAAGCAGCACGCCAAGAAATGG
rJMSF003H02+ CTCTTTTGCGTGATCGTGACCTGAGAGAAACAATGGGCAAAGCAGCACGCCAAGAAATGG
rJMSF039L02+ CTCTTTTGCGTGATCGTGACCTGAGAGAAACAATGGGCAAAGCAGCACGCCAAGAAATGG
                      ____________________________________________________________
consensus CTCTTTTGCGTGATCGTGACCTGAGAGAAACAATGGGCAAAGCAGCACGCCAAGAAATGG
 
. : . : . : . : . : . :
rJMSF050F09+ AGAAGTATGACTGGAGGGCGGCCACTAAAATGATTCGTAATGAACAATACAACGCTGCCA
rJMSF003H02+ AGAAGTATGACTGGAGGGCGGCCACTAAAATGATTCGTAATGAACAATACAACGCTGCCA
rJMSF039L02+ AGAAGTATGACTGGAGGGCGGCCACTAAAATGATTCGTAATGAACAATACAACGCTGCCA
                      ____________________________________________________________
consensus AGAAGTATGACTGGAGGGCGGCCACTAAAATGATTCGTAATGAACAATACAACGCTGCCA
 
. : . : . : . : . : . :
rJMSF050F09+ TCTGGTTTTGGAGGAAGAAGAGAGCCCAGCTGTTGAGGCCATTCCAATGGCTGTTTAAGC
rJMSF003H02+ TCTGGTTTTGGAGGAAGAAGAGAGCCCAGCTGTTGAGGCCATTCCAATGGCTGTTTAAGC
rJMSF039L02+ TCTGGTTTTGGAGGAAGAAGAGAGCCCAGCTGTTGAGGCCATTCCAATGGCTGTTTAAGC
                      ____________________________________________________________
consensus TCTGGTTTTGGAGGAAGAAGAGAGCCCAGCTGTTGAGGCCATTCCAATGGCTGTTTAAGC
 
. : . : . : . : . : . :
rJMSF050F09+ GAGTGTTCCAGCCACCGCAAATTGAATATAGGTGATGTATTTCTCGCCTTCTCGGATTCT
rJMSF003H02+ GAGTGTTCCAGCCACCGCAAATTGAATATAGGTGATGTATTTCTCGCCTTCTCGGATTCT
rJMSF039L02+ GAGTGTTCCAGCCACCGCAAATTGAATATAGGTGATGTATTTCTCGCCTTCTCGGATTCT
                      ____________________________________________________________
consensus GAGTGTTCCAGCCACCGCAAATTGAATATAGGTGATGTATTTCTCGCCTTCTCGGATTCT
 
. : . : . : . : . : . :
rJMSF050F09+ TCTCCAGCAACAATCTATGCTCTACCAGACCAGTGTGCTATGAGATTTCTGCATTATATT
rJMSF003H02+ TCTCCAGCAACAATCTATGCTCTACCAGACCAGTGTGCTATGAGATTTCTGCATTATATT
rJMSF039L02+ TCTCCAGCAACAATCTATGCTCTACCAGACCAGTGTGCTATGAGATTTCTGCATTATATT
                      ____________________________________________________________
consensus TCTCCAGCAACAATCTATGCTCTACCAGACCAGTGTGCTATGAGATTTCTGCATTATATT
 
. : . : . : . : . : . :
rJMSF050F09+ GCTGTTTGCTTGCACCATTGGTGTGAACTGTAGAATTTTAGGTCCATTGTGCTTTTAGCC
rJMSF003H02+ GCTGTTTGCTTGCACCATTGGTGTGAACTGTAGAATTTTAGGTCCATTGTGCTTTTAGCC
rJMSF039L02+ GCTGTTTGCTTGCACCATTGGTGTGAACTGTAGAATTTTAGGTCCATTGTGCTTTTAGCC
                      ____________________________________________________________
consensus GCTGTTTGCTTGCACCATTGGTGTGAACTGTAGAATTTTAGGTCCATTGTGCTTTTAGCC
 
. : . : . : . : . : . :
rJMSF050F09+ TCTTAGTGATTCGATTGAATTGGTAAATCTAAGTTAT
rJMSF003H02+ TCTTAGTGATTCGATTGAATTGGTAAATCTAAGTTATGATTTTAGCAACTTGTAAGAAAT
rJMSF039L02+ TCTTAGTGATTCGATTGAATTGGTAAATCTAAGTTATGATTTTAGCAACTTGTAAGAAAT
                      ____________________________________________________________
consensus TCTTAGTGATTCGATTGAATTGGTAAATCTAAGTTATGATTTTAGCAACTTGTAAGAAAT
 
. : . : . : . : . : . :
rJMSF003H02+ AAAGGCTCCTGTTAGGATCAAATGCTTATTATTACGTCAAAAAG
rJMSF039L02+ AAAGGCTCCTGTTAGGATCAAATGCTTATTATTACGTCAAAAAGTTTATTTTAGGTGGGG
                      ____________________________________________________________
consensus AAAGGCTCCTGTTAGGATCAAATGCTTATTATTACGTCAAAAAGTTTATTTTAGGTGGGG