Contig 002925:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN006K03-                                                        CCATTTCCAAGATGA
JMFN037P11-                                                                  GATGA
                      ____________________________________________________________
consensus                                                          CCATTTCCAAGATGA
 
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JMFN006K03-           CGAGCCTCCTCAGAAACGCTGCGAAGTCGAGCCGTTCGATCCAAGCATGTTTGGGAAATC
JMFN037P11-           CGAGCCTCCTCAGAAACGCTGCGAAGTCGAGCCGTTCGATCCAAGCATGTTTGGGAAATC
                      ____________________________________________________________
consensus             CGAGCCTCCTCAGAAACGCTGCGAAGTCGAGCCGTTCGATCCAAGCATGTTTGGGAAATC
 
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JMFN006K03-           AAGGGCTATCCACGCTCCTCCGCGACACTTCCAGACGGTTCACAACGGAAGCAGAGGCTC
JMFN037P11-           AAGGGCTATCCACGCTCCTCCGCGACACTTCCAGACGGTTCACAACGGAAGCAGAGGCTC
rJMSF024M19+                                                        GGAAGCAGAGGCTC
                      ____________________________________________________________
consensus             AAGGGCTATCCACGCTCCTCCGCGACACTTCCAGACGGTTCACAACGGAAGCAGAGGCTC
 
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JMFN006K03-           CGCGGCCACCGCCACCACGGCAGCCGCAGCGAGG--AAACTTTCCTCCCAGACCGATTCC
JMFN037P11-           CGCGGCCACCGCCACCACGGCAGCCGCAGCGAGG--AAACTTTCCTCCCAGACCGATTCC
rJMSF024M19+          CGCGGCCACCGCCACCACGGCAGCCGCAGCGAGGGAAACTTTCCTTCCCAGACCGATTCC
                      ____________________________________________________________
consensus             CGCGGCCACCGCCACCACGGCAGCCGCAGCGAGG--AAACTTTCCTCCCAGACCGATTCC
 
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JMFN006K03-           AGATTTCGAACCAAATGGTAAAGTGTATGGGAGGATAAATTCAGTTGGAAGGTTTACAAC
JMFN037P11-           AGATTTCGAACCAAATGGTAAAGTGTATGGGAGGATAAATTCAGTTGGAAGGTTTACAAC
rJMSF024M19+          AGATTTCGAACCAAATGGTAAAGTGTATGGGAGGATAAATTCAGTTGGAAGGTTTACAAC
rJMSF035K08+                           GTAAAGTGTATGGGAGGATAAATTCAGTTGGAAGGTTTACAAC
                      ____________________________________________________________
consensus             AGATTTCGAACCAAATGGTAAAGTGTATGGGAGGATAAATTCAGTTGGAAGGTTTACAAC
 
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JMFN006K03-           TAAGAGTGACATTATAGCTATGATTGGAGACTCTAATCTGACTTTGGAAGATATCAAGTT
JMFN037P11-           TAAGAGTGACATTATAGCTATGATTGGAGACTCTAATCTGACTTTGGAAGATATCAAGTT
rJMSF024M19+          TAAGAGTGACATTATAGCTATGATTGGAGACTCTAATCTGACTTTGAAAGATATCAAGTT
rJMSF035K08+          TAAGAGTGACATTATAGCTATGATTGGAGACTCTAATCTGACTTTGGAAGATATCAAGTT
                      ____________________________________________________________
consensus             TAAGAGTGACATTATAGCTATGATTGGAGACTCTAATCTGACTTTGGAAGATATCAAGTT
 
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JMFN006K03-           TGATTACAACATAACCTTCAATGGAAATGCAGCGGTAATCCAATTCCCTTCTCAAACGGA
JMFN037P11-           TGATTACAACATAACCTTCAATGGAAATGCAGCGGTAATCCAATTCCCTTCTCAAACGGA
rJMSF024M19+          TGATTACAACATAACCTTCAATGGAAATGCAGCGGTAATCCAATTCCCTTCTCAAACGGA
rJMSF035K08+          TGATTACAACATAACCTTCAATGGAAATGCAGCGGTAATCCAATTCCCTTCTCAAACGGA
                      ____________________________________________________________
consensus             TGATTACAACATAACCTTCAATGGAAATGCAGCGGTAATCCAATTCCCTTCTCAAACGGA
 
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JMFN006K03-           TTATTCAGCTGCAGTCAGAGCAGTAACTCCAAAGACCACACGGCAAGGTGGACTGTCTAA
JMFN037P11-           TTATTCAGCTGCAGTCAGAGCAGTAACTCCAAAGACCACACGGCAAGGTGGACTGTCTAA
rJMSF024M19+          TTATTCAGCTGCAGTCAGAGCAGTAACTCCAAAGACCACACGGCAAGGTGGACTGTCTAA
rJMSF035K08+          TTATTCAGCTGCAGTCAGAGCAGTAACTCCAAAGACCACACGGCAAGGTGGACTGTCTAA
                      ____________________________________________________________
consensus             TTATTCAGCTGCAGTCAGAGCAGTAACTCCAAAGACCACACGGCAAGGTGGACTGTCTAA
 
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JMFN006K03-           GGTTGATCGTATACAATGGGAGAATCTAAAATCATATGACGGAAAATCAATTTTACTGCA
JMFN037P11-           GGTTGATCGTATACAATGGGAGAATCTAAAATCATATGACGGAAAATCAATTTTACTGCA
rJMSF024M19+          GGTTGATCGTATACAATGGGAGAATCTAAAATCATATGACGGAAAATCAATTTTACTGCA
rJMSF035K08+          GGTTGATCGTATACAATGGGAGAATCTAAAATCATATGACGGAAAATCAATTTTACTGCA
                      ____________________________________________________________
consensus             GGTTGATCGTATACAATGGGAGAATCTAAAATCATATGACGGAAAATCAATTTTACTGCA
 
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JMFN006K03-           AGGGATCCCTCGCAATGCACAAATGGATGATGTGGAACGCTTTCTTTCTGGATGCCAGTA
JMFN037P11-           AGGGATCCCTCGCAATGCACAAATGGATGATGTGGAACGCTTTCTTTCTGGATGCCAGTA
rJMSF024M19+          AGGGATCCCTCGCAATGCACAAATGGATGATGTGGAACGCTTTCTTTCTGGATGCCAGTA
rJMSF035K08+          AGGGATCCCTCGCAATGCACAAATGGATGATGTGGAACGCTTTCTTTCTGGATGCCAGTA
                      ____________________________________________________________
consensus             AGGGATCCCTCGCAATGCACAAATGGATGATGTGGAACGCTTTCTTTCTGGATGCCAGTA
 
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JMFN006K03-           TGATTTATCTTCCATCTCAATGTTTTTCCGCACACTGCAACCAAGATTTATAGAAAATCA
JMFN037P11-           TGATTTATCTTCCATCTCAATGTTTTTCCGCACACTGGCACCAAGATTTATAGAAAATCA
rJMSF024M19+          TGATTTATCTTCCATCTCAATGTTTTTCCGCACACTGCAACCAAGATTTATAGAAAATCA
rJMSF035K08+          TGATTTATCTTCCATCTCAATGTTTTTCCGCACACTGCAACCAAGATTTATAGAAAATCA
                      ____________________________________________________________
consensus             TGATTTATCTTCCATCTCAATGTTTTTCCGCACACTGCAACCAAGATTTATAGAAAATCA
 
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rJMSF024M19+          GGAGGCAATTAGGATGGCTGTTGTGAACTTCCCATCACGAGCTTCAGCTTCACATGCTTT
rJMSF035K08+          GGAGGCAATTAGGATGGCTGTTGTGAACTTCCCATCACGAGCTTCAGCTTCACATGCTTT
                      ____________________________________________________________
consensus             GGAGGCAATTAGGATGGCTGTTGTGAACTTCCCATCACGAGCTTCAGCTTCACATGCTTT
 
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rJMSF024M19+          TATCACCAAGAACAGAGGCTTCTGTCTCAATAGCCAAATTGGCATTCGAATTCTGCATTA
rJMSF035K08+          TATCACCAAGAACAGAGGCTTCTGTCTCAATAGCCAAATTGGCATTCGAATTCTGCATTA
                      ____________________________________________________________
consensus             TATCACCAAGAACAGAGGCTTCTGTCTCAATAGCCAAATTGGCATTCGAATTCTGCATTA
 
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rJMSF024M19+          GCAGCTCCCCTTTTATAAGCTCCTTTACATCATTTATAATGTTTCAGAGGGAAAATACCG
rJMSF035K08+          GCAGCTCCCCTTTTATAAGCTCCTTTACATCATTTATAATGTTTCAGAGGGAAAATACCG
                      ____________________________________________________________
consensus             GCAGCTCCCCTTTTATAAGCTCCTTTACATCATTTATAATGTTTCAGAGGGAAAATACCG
 
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rJMSF024M19+          TTTTCATCTTGGTGTAGTTTGATCCCTTTTAGAATGTTGAAATAACCTTTTGAGAGATGG
rJMSF035K08+          TTTTCATCTTGGTGTAGTTTGATCCCTTTTAGAATGTTGAAATAACCTTTTGAGAGATGG
                      ____________________________________________________________
consensus             TTTTCATCTTGGTGTAGTTTGATCCCTTTTAGAATGTTGAAATAACCTTTTGAGAGATGG
 
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rJMSF024M19+          GGTTAGGGACTTGGTGGTGCTGATTTTTTGTTATAATTCACGTCTCTTTCTACTGCAAAG
rJMSF035K08+          GGTTAGGGACTTGGTGGTGCTGATTTTTTGTTATAATTCACGTCTCTTTCTACTGCAAAG
                      ____________________________________________________________
consensus             GGTTAGGGACTTGGTGGTGCTGATTTTTTGTTATAATTCACGTCTCTTTCTACTGCAAAG
 
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rJMSF024M19+          AGA                                                         
rJMSF035K08+          AGACACTATTTGGTTTAGGGTGCTTTAACCATGAAGTTCAGAAAATGGTTCTATTTGCTA
                      ____________________________________________________________
consensus             AGACACTATTTGGTTTAGGGTGCTTTAACCATGAAGTTCAGAAAATGGTTCTATTTGCTA