Contig 002905:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005H24Sequence762002905 (3)
JMFF025F05Sequence571018437ref|XP_004289219.1|2e-06PREDICTED: F-box protein CPR30-like [Fragaria vesca subsp. vesca]774002905 (3)
JMSF031G16Sequence655002032 (3)emb|CBI40058.3|3e-40unnamed protein product [Vitis vinifera]768002905 (3)

Alignment

This contig is upended


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rJMFF005H24+                                                                  ATAA
rJMFF025F05+                                                                   TAA
                      ____________________________________________________________
consensus                                                                     ATAA
 
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rJMFF005H24+          AGGGATGCTACATTGGCTGATTTCTGGGTTTGTTCTTGTGTATGATCCCTATAGTTGTCT
rJMFF025F05+          AGGGATGCTACATTGGCTGATTTCTGGGTTTGTTCTTGTGTATGATCCCTATAATNGTCT
rJMSF031G16+                                           TCTTGTGTATGATCCCTATAATTGTCT
                      ____________________________________________________________
consensus             AGGGATGCTACATTGGCTGATTTCTGGGTTTGTTCTTGTGTATGATCCCTATAATTGTCT
 
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rJMFF005H24+          TGAAAGATTTTGCCGTGTAATTGATACCCCAGCTATAGCCCGGGACCAGTGGCGAAAGTT
rJMFF025F05+          TGAAAGATTTTGCCGTGTAATTGATACCCCAGCTATAGCCCGGGACCAGTGGCGAAAGTT
rJMSF031G16+          TGAAAGATTTTGCCGTGTAATTGATACCCCAGCTATAGCCCGGGACCAGTGGCGAAAGTT
                      ____________________________________________________________
consensus             TGAAAGATTTTGCCGTGTAATTGATACCCCAGCTATAGCCCGGGACCAGTGGCGAAAGTT
 
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rJMFF005H24+          CCAAACCATTGGAGTGTTTCAGGATCGTCTTCGTTTAACACATGCTTGGCCTTCCGAATA
rJMFF025F05+          CCAAACCATTGGAGTGTTTCAGGATCGTCTTCGTTTAACACATGCTTGGCCTTCCGAATA
rJMSF031G16+          CCAAACCATTGGAGTGTTTCAGGATCGTCTTCGTTTAACACATGCTTGGCCTTCCGAATA
                      ____________________________________________________________
consensus             CCAAACCATTGGAGTGTTTCAGGATCGTCTTCGTTTAACACATGCTTGGCCTTCCGAATA
 
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rJMFF005H24+          TTATATATGGGAGCTGGAGGACTACAACATGGGGAAGTGGAGTCTGGTGCACAAGATTTC
rJMFF025F05+          TTATATATGGGAGCTGGAGGACTACAACATGGGGAAGTGGAGTCTGGTGCACAAGATTTC
rJMSF031G16+          TTATATATGGGAGCTGGAGGACTACAACATGGGGAAGTGGAGTCTGGTGCACAAGATTTC
                      ____________________________________________________________
consensus             TTATATATGGGAGCTGGAGGACTACAACATGGGGAAGTGGAGTCTGGTGCACAAGATTTC
 
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rJMFF005H24+          CAATAGAGCAAGTCTCCATCTTCGGGCCTTCCCGAATGATCCTCATCATCTTCCTCATTT
rJMFF025F05+          CAATAGAGCAAGTCTCCATCTTCGGGCCTTCCCGAATGATCCTCATCATCTTCCTCATTT
rJMSF031G16+          CAATAGAGCAAGTCTCCATCTTCGGGCCTTCCCGAATGATCCTCATCATCTTCCTCATTT
                      ____________________________________________________________
consensus             CAATAGAGCAAGTCTCCATCTTCGGGCCTTCCCGAATGATCCTCATCATCTTCCTCATTT
 
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rJMFF005H24+          TGATCCTATAGTTAATCTTGATCCTAAAATTAGAGAGACAGGATTTTCCTGCAAAGATGG
rJMFF025F05+          TGATCCTATAGTTAATCTTGATCCTAAAATTAGAGAGACAGGATTTTCCTGCAAAGATGG
rJMSF031G16+          TGATCCTATAGTTAATCTTGATCCTAAAATTAGAGAGACAGGATTTTCCTGCAAAGATGG
                      ____________________________________________________________
consensus             TGATCCTATAGTTAATCTTGATCCTAAAATTAGAGAGACAGGATTTTCCTGCAAAGATGG
 
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rJMFF005H24+          GAGTGTTTTTTATTGGACCAATTCTTCTTCTTCTTCTGGGTGGCGGGTTGCTAATGGGAT
rJMFF025F05+          GAGTGTTTTTTATTGGACCAATTCTTCTTCTTCTTCTGGGTGGCGGGTTGCTAATGGGAT
rJMSF031G16+          GAGTGTTTTTTATTGGACCAATTCTTCTTCTTCTTCTGGGTGGCGGGTTGCTAATGGGAT
                      ____________________________________________________________
consensus             GAGTGTTTTTTATTGGACCAATTCTTCTTCTTCTTCTGGGTGGCGGGTTGCTAATGGGAT
 
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rJMFF005H24+          TGTCCATTGGATTACTCATCAATCGTGGCCAACACCAGTACCACCACTAACTGCTTGCAC
rJMFF025F05+          TGTCCATTGGATTACTCATCAATCGTGGCCAACACCAGTACCACCACTAACTGCTTGCAC
rJMSF031G16+          TGTCCATTGGATTACTCATCAATCGTGGCCAACACCAGTACCACCACTAACTGCTTGCAC
                      ____________________________________________________________
consensus             TGTCCATTGGATTACTCATCAATCGTGGCCAACACCAGTACCACCACTAACTGCTTGCAC
 
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rJMFF005H24+          AATTCCAAGCCCAACTTTATTGACTATTCACATTGGGGGAAAAGAAGAGGAAGAAGAAAG
rJMFF025F05+          AATTCCAAGCCCAACTTTATTGACTATTCACATTGGGGGAAAAGAAGAGGAAGAAGAAAG
rJMSF031G16+          AATTCCAAGCCCAACTTTATTGACTATTCACATTGGGGGAAAAGAAGAGGAAGAAGAAAG
                      ____________________________________________________________
consensus             AATTCCAAGCCCAACTTTATTGACTATTCACATTGGGGGAAAAGAAGAGGAAGAAGAAAG
 
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rJMFF005H24+          TGAGAGGGAGAGAGGATAACGTAGCCGTTGGTGATCATATACCGGCTATCGGAGCTAAGC
rJMFF025F05+          TGAGAGGGAGAGAGGATAACGTCGCCGTTGGTGATCATATACCGGCTATCGGAGCTAAGC
rJMSF031G16+          TGAGAGGGAGAGAGGATAACGTCGCCGTTGGTGATCATATACCGGCTATCGGAGCTAAGC
                      ____________________________________________________________
consensus             TGAGAGGGAGAGAGGATAACGTCGCCGTTGGTGATCATATACCGGCTATCGGAGCTAAGC
 
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rJMFF005H24+          CTTTGGTTGTGAGCTGCAGTTATGGGGAATAGTGTTGAAGGAATTTTATTAGTATGCTTT
rJMFF025F05+          CTTTGGTTGTGAGCTGCAGTTATGGGGAATAGTGTTGAAGGAATTTTATTAGTATGCTTT
rJMSF031G16+          CTTTGGTTGTGAGCTGCAGTTATGGGGAATAGTGTTGAAGGAATTTTATTAGTATGCTTT
                      ____________________________________________________________
consensus             CTTTGGTTGTGAGCTGCAGTTATGGGGAATAGTGTTGAAGGAATTTTATTAGTATGCTTT
 
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rJMFF005H24+          TTAGTTTTTATGGTCTGAAGTATCAAAAAGTTTCATTCTTTTGTTTCAAACTATGAATTA
rJMFF025F05+          TTAGTTTTTATGGTCTGAAGTATCAAAAAGTTTCATTCTTTTGTTTCAAACTATGAATTA
rJMSF031G16+          TTAGTTTTTATGGTCTGAAGTATCAAAAAGTTTCATTCTTTTGTTTCAAACTATGAATTA
                      ____________________________________________________________
consensus             TTAGTTTTTATGGTCTGAAGTATCAAAAAGTTTCATTCTTTTGTTTCAAACTATGAATTA
 
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rJMFF005H24+          TGGTTTTACCAGTGTTTTCTGCTAGGAATTATGCTAC                       
rJMFF025F05+          TGGTTTTACCAGTGTTTTCTGCTAGGAATTATGCTAC                       
rJMSF031G16+          TGGTTTTACCAGTGTTTTCTGCTAGGAATTATGCTACCATTGCTTCTAAGATACCCTTGT
                      ____________________________________________________________
consensus             TGGTTTTACCAGTGTTTTCTGCTAGGAATTATGCTACCATTGCTTCTAAGATACCCTTGT