Contig 002899:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN041N05Sequence592002899 (3)ref|XP_011020188.1|2e-39PREDICTED: 36.4 kDa proline-rich protein-like [Populus euphratica]
JMSF029N20Sequence657002899 (3)ref|XP_011020188.1|3e-39PREDICTED: 36.4 kDa proline-rich protein-like [Populus euphratica]602002899 (3)ref|XP_011020188.1|2e-39PREDICTED: 36.4 kDa proline-rich protein-like [Populus euphratica]

Alignment

This contig is upended


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JMFN041N05+                                                  TTAAATATAAAATGTCACAAG
JMSF029N20+              TTTTTTTTTCTCAACAAATTATTTATACAAAATGTATTAAATATAAAATGTCACAAG
rJMSF029N20-                                                                    AG
                      ____________________________________________________________
consensus                TTTTTTTTTCTCAACAAATTATTTATACAAAATGTATTAAATATAAAATGTCACAAG
 
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JMFN041N05+           TTGAATAATCCCAAAAGAAACTCACATAAATCCGTTAATCTAAAGCTCTGAACTTAGGTA
JMSF029N20+           TTGAATAATCCCAAAAGAAACTCACATAAATCCGTTAATCTAAAGCTCTGAACTTAGGTA
rJMSF029N20-          TTGAATAATCCCAAAAGAAACTCACATAAATCCGTTAATCTAAAGCTCTGAACTTAGGTA
                      ____________________________________________________________
consensus             TTGAATAATCCCAAAAGAAACTCACATAAATCCGTTAATCTAAAGCTCTGAACTTAGGTA
 
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JMFN041N05+           GGTAGGTCTAAATAGAACAAGTGTAGCCAGGTGGTGGTGGCTTGCCACAAGTGACGAGAA
JMSF029N20+           GGTAGGTCTAAATAGAACAAGTGTAGCCAGGTGGTGGTGGCTTGCCACAAGTGACGAGAA
rJMSF029N20-          GGTAGGTCTAAATAGAACAAGTGTAGCCAGGTGGTGGTGGCTTGCCACAAGTGACGAGAA
                      ____________________________________________________________
consensus             GGTAGGTCTAAATAGAACAAGTGTAGCCAGGTGGTGGTGGCTTGCCACAAGTGACGAGAA
 
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JMFN041N05+           GTTGAAGTGCAATTGGAACATAGATATTGAGGTTGAGAGCCTTTATCTTCAACGTTGTAC
JMSF029N20+           GTTGAAGTGCAATTGGAACATAGATATTGAGGTTGAGAGCCTTTATCTTCAACGTTGTAC
rJMSF029N20-          GTTGAAGTGCAATTGGAACATAGATATTGAGGTTGAGAGCCTTTATCTTCAACGTTGTAC
                      ____________________________________________________________
consensus             GTTGAAGTGCAATTGGAACATAGATATTGAGGTTGAGAGCCTTTATCTTCAACGTTGTAC
 
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JMFN041N05+           ACAAACACGCCGCAGCTTCAACCTCCACAAGCCCTTTGAGTAACGGGCAACACTGGTTCA
JMSF029N20+           ACAAACACGCCGCAGCTTCAACCTCCACAAGCCCTTTGAGTAACGGGCAACACTGGTTCA
rJMSF029N20-          ACAAACACGCCGCAGCTTCAACCTCCACAAGCCCTTTGAGTAACGGGCAACACTGGTTCA
                      ____________________________________________________________
consensus             ACAAACACGCCGCAGCTTCAACCTCCACAAGCCCTTTGAGTAACGGGCAACACTGGTTCA
 
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JMFN041N05+           CAACCGGGTCTCCCAGCCCAATGTGGACCAGCCCACCCAGGAGATCCACACACGCCCCTA
JMSF029N20+           CAACCGGGTCTCCCAGCCCAATGTGGACCAGCCCACCCAGGAGATCCACACACGCCCCTA
rJMSF029N20-          CAACCGGGTCTCCCAGCCCAATGTGGACCAGCCCACCCAGGAGATCCACACACGCCCCTA
                      ____________________________________________________________
consensus             CAACCGGGTCTCCCAGCCCAATGTGGACCAGCCCACCCAGGAGATCCACACACGCCCCTA
 
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JMFN041N05+           GCTTTAGAGTGTCCACTGGGCACGACGGCGGCGGCGGCGGCGGTGGAGGACAGGGCGGCT
JMSF029N20+           GCTTTAGAGTGTCCACTGGGCACGACGGCGGCGGCGGCGGCGGTGGAGGACAGGGCGGCT
rJMSF029N20-          GCTTTAGAGTGTCCACTGGGCACGACGGCGGCGGCGGCGGCGGTGGAGGACAGGGCGGCT
                      ____________________________________________________________
consensus             GCTTTAGAGTGTCCACTGGGCACGACGGCGGCGGCGGCGGCGGTGGAGGACAGGGCGGCT
 
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JMFN041N05+           TAACAATCGGCACCGGAGGAGGACTGGGCTTCTTGTGTTTGTGATGCTTATTGTGAGTAG
JMSF029N20+           TAACAATCGGCACCGGAGGAGGACTGGGCTTCTTGTGTTTGTGATGCTTATTGTGAGTAG
rJMSF029N20-          TAACAATCGGCACCGGAGGAGGACTGGGCTTCTTGTGTTTGTGATGCTTATTGTGAGTAG
                      ____________________________________________________________
consensus             TAACAATCGGCACCGGAGGAGGACTGGGCTTCTTGTGTTTGTGATGCTTATTGTGAGTAG
 
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JMFN041N05+           TAGTAGTAGTGGAGTGTTGTTTGCAGTGTCCGCAGCCATGAATATGATTGGCAGTAGTGA
JMSF029N20+           TAGTAGTAGTGGAGTGTTGTTTGCAGTGTCCGCAGCCATGAATATGATTGGCAGTAGTGA
rJMSF029N20-          TAGTAGTAGTGGAGTGTTGTTTGCAGTGTCCGCAGCCATGAATATGATTGGCAGTAGTGA
                      ____________________________________________________________
consensus             TAGTAGTAGTGGAGTGTTGTTTGCAGTGTCCGCAGCCATGAATATGATTGGCAGTAGTGA
 
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JMFN041N05+           CTGAGGAAATGAAAAGCACGGCAACAAATAATAATGGGATTATCCTTATCAAGAAACTCT
JMSF029N20+           CTGAGGAAATGAAAAGCACGGCAACAAATAATAATGGGATTATCCTTATCAAGAAACTCT
rJMSF029N20-          CTGAGGAAATGAAAAGCACGGCAACAAATAATAATGGGATTATCCTTATCAAGAAACTCT
                      ____________________________________________________________
consensus             CTGAGGAAATGAAAAGCACGGCAACAAATAATAATGGGATTATCCTTATCAAGAAACTCT
 
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JMFN041N05+           TCATTTTCTTCTGATCTGTTTAATTTTCTTA                             
JMSF029N20+           TCATTTTCTTCTGATCTGTTTAATTTTCTTATATGATGAATGGCCGGGAATTGAAGCATC
rJMSF029N20-          TCATTTTCTTCTGATCTGTTTAATTTTCTTATATGATGAATGGCCGGGAATTGAAGCATC
                      ____________________________________________________________
consensus             TCATTTTCTTCTGATCTGTTTAATTTTCTTATATGATGAATGGCCGGGAATTGAAGCATC