Contig 002898:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN010J18Sequence607002898 (7)ref|XP_004242663.1|9e-112PREDICTED: preprotein translocase subunit SCY1, chloroplastic [Solanum lycopers
JMSF001O13Sequence199013357 (6)712002898 (7)gb|KJB53846.1|9e-104hypothetical protein B456_009G007500 [Gossypium raimondii]
JMSF022K08Sequence675013357 (6)ref|XP_004242663.1|5e-67PREDICTED: preprotein translocase subunit SCY1, chloroplastic [Solanum lycopers747002898 (7)gb|KJB53846.1|1e-105hypothetical protein B456_009G007500 [Gossypium raimondii]
JMSF023J15Sequence654013357 (6)ref|XP_004242663.1|1e-73PREDICTED: preprotein translocase subunit SCY1, chloroplastic [Solanum lycopers754002898 (7)gb|KJB53846.1|9e-110hypothetical protein B456_009G007500 [Gossypium raimondii]
JMSF023K08Sequence661013357 (6)ref|XP_004242663.1|5e-64PREDICTED: preprotein translocase subunit SCY1, chloroplastic [Solanum lycopers738002898 (7)gb|KJB53846.1|2e-109hypothetical protein B456_009G007500 [Gossypium raimondii]
JMSF029M23Sequence651013357 (6)ref|XP_004242663.1|6e-73PREDICTED: preprotein translocase subunit SCY1, chloroplastic [Solanum lycopers605002898 (7)ref|XP_004973082.1|1e-75PREDICTED: preprotein translocase subunit SECY, chloroplastic-like [Setaria ita
JMSF039K10Sequence696013357 (6)ref|XP_004242663.1|4e-70PREDICTED: preprotein translocase subunit SCY1, chloroplastic [Solanum lycopers912002898 (7)gb|KJB53846.1|3e-148hypothetical protein B456_009G007500 [Gossypium raimondii]

Alignment

This contig is upended


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JMFN010J18- CAAGTTGCAAGAACTTCAGAAAAGAGAAGGTG
                      ____________________________________________________________
consensus CAAGTTGCAAGAACTTCAGAAAAGAGAAGGTG
 
. : . : . : . : . : . :
JMFN010J18- AAGCTGGAAGAAAGAAAGTGCTTCAGTATACCCGCTATGCATCTGTAGGGTTTGCCATTG
                      ____________________________________________________________
consensus AAGCTGGAAGAAAGAAAGTGCTTCAGTATACCCGCTATGCATCTGTAGGGTTTGCCATTG
 
. : . : . : . : . : . :
JMFN010J18- TACAGGCAATCGGCCAAGCACTATATCTTCGCCCTTATGTCGATGACTTTAGTACTCAGT
                      ____________________________________________________________
consensus TACAGGCAATCGGCCAAGCACTATATCTTCGCCCTTATGTCGATGACTTTAGTACTCAGT
 
. : . : . : . : . : . :
JMFN010J18- GGGTTCTTTCTACTGTTGTTCTGTTGACTCTTGGTTCAGTATTTACGACGTACATTGGGG
                      ____________________________________________________________
consensus GGGTTCTTTCTACTGTTGTTCTGTTGACTCTTGGTTCAGTATTTACGACGTACATTGGGG
 
. : . : . : . : . : . :
JMFN010J18- AGCGAATATCCGATTTAAAACTAGGAAATGGTACATCTCTTTTGATCTTCACAAATATCA
rJMSF039K10+ CTTTTGATCTTCACAAATATCA
                      ____________________________________________________________
consensus AGCGAATATCCGATTTAAAACTAGGAAATGGTACATCTCTTTTGATCTTCACAAATATCA
 
. : . : . : . : . : . :
JMFN010J18- TCTCCTACTTG-CCAGCATCCTTT-GGTAGGACAGTTGCACAGGCATATCAAGATGGAAA
rJMSF039K10+ TCTCCTACTTGNCCAGCATCCTTTGGGTAGGACAGTTGCACAGGCATATCAAGATGGAAA
                      ____________________________________________________________
consensus TCTCCTACTTGNCCAGCATCCTTTGGGTAGGACAGTTGCACAGGCATATCAAGATGGAAA
 
. : . : . : . : . : . :
JMFN010J18- CTATGTTGGGCTCGTTGGCATCATTGTTTCCTTCGCCCTTTTAGTCCTTAGCATAGTTTA
rJMSF039K10+ CTATGTTGGGCTCGTTGGCATCATTGTTTCCTTCGCCCTTTTAGTCCTTAGCATAGTTTA
                      ____________________________________________________________
consensus CTATGTTGGGCTCGTTGGCATCATTGTTTCCTTCGCCCTTTTAGTCCTTAGCATAGTTTA
 
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JMFN010J18- CGTACAGGAAGCAGAGAGGAAAATTCCACTTAACTATGCCTCAAGATATACTAGCAAGAC
rJMSF039K10+ CGTACAGGAAGCAGAGAGGAAAATTCCACTTAACTATGCCTCAAGATATACTAGCAAGAC
                      ____________________________________________________________
consensus CGTACAGGAAGCAGAGAGGAAAATTCCACTTAACTATGCCTCAAGATATACTAGCAAGAC
 
. : . : . : . : . : . :
JMFN010J18- TGGAGGCCTTCAAAAATCTGCTTACTTACCCTTTAAAGTAAATAGTTCAGGAGTTATGCC
rJMSF039K10+ TGGAGGCCTTCAAAAATCTGCTTACTTACCCTTTAAAGTAAATAGTTCAGGAGTTATGCC
rJMSF023K08+ AAAATCTGCNTACTTACCCTTTAAAGTAAATAGTTCAGGAGTTATGCC
rJMSF001O13+ AAGTAAATAGTTCAGGAGTTATGCC
rJMSF022K08+ TTAAAGTAAATAGTTCAGGAGTTATGCC
rJMSF023J15+ ATCTGCTTACTTACCCTTTAAAGTAAATAGTTCAGGAGTTATGCC
                      ____________________________________________________________
consensus TGGAGGCCTTCAAAAATCTGCTTACTTACCCTTTAAAGTAAATAGTTCAGGAGTTATGCC
 
. : . : . : . : . : . :
JMFN010J18- AATTATCTTCTCTACATCATCATTGGCTATTCCTGGCACTCTGGCACGATTCACTGGCGT
rJMSF039K10+ AATTATCTTCTCTACATCATCATTGGCTATTCCTGGCACTCTGGCACGATTCACTGGCGT
rJMSF023K08+ AATTATCTTCTNTACATCATCATTGGCTATTCCTGGCACTCTGGCACGATTCACTGGCGN
rJMSF001O13+ AATTATCTTCTCTACATCATCATNGGCTATTCCTGGCACTCTGGCACGATTCACTGGCGT
rJMSF022K08+ AATTATCTTCTCTACATCATCATTGGCTATTCCTGGCACTCTGGCACGATTCACTGGCGT
rJMSF023J15+ AATTATCTTCTCTACATCATCATTGGCTATTCCTGGCACTCTGGCACGATTCACTGGCGT
                      ____________________________________________________________
consensus AATTATCTTCTCTACATCATCATTGGCTATTCCTGGCACTCTGGCACGATTCACTGGCGT
 
. : . : . : . : . : . :
JMFN010J18- TGGGGTGCTAAGAAATGTGGCAGTTGCCTTAAACCCT
rJMSF039K10+ TGGGGTGCTAAGAAATGTGGCAGTTGCCTTAAACCCTGGCGGTTCTTTCTATCTCCCAAC
rJMSF023K08+ TGGGGTGCTAAGAAATGTGGCAGTTGCCTTAAACCCTGGCGGTTCTTTCTATCTCCCAAC
rJMSF001O13+ TGGGGTGCTAAGAAATGTGGCAGTTGCCTTAAACCCTGGCGGTTCTTTCTATCTCCCAAC
rJMSF022K08+ TGGGGTGCTAAGAAATGTGGCAGTTGCCTTAAACCCTGGCGGTTCTTTCTATCTCCCAAC
rJMSF023J15+ TGGGGTGCTAAGAAATGTGGCAGTTGCCTTAAACCCTGGCGGTTCTTTCTATCTCCCAAC
rJMSF029M23+ CCAAC
                      ____________________________________________________________
consensus TGGGGTGCTAAGAAATGTGGCAGTTGCCTTAAACCCTGGCGGTTCTTTCTATCTCCCAAC
 
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rJMSF039K10+ AAATGTACTATTGATTGCCTTCTTTAATTACTATTACACATTCCTGCAACTGGACCCTGA
rJMSF023K08+ AAATGTACTATTGATTGCCTTCTTTAATTACTATTACACATTCCTGCAACTGGACCCTGA
rJMSF001O13+ AAATGTACTATTGATTGCCTTCTTTAATTACTATTACACATTCCTGCAACTGGACCCTGA
rJMSF022K08+ AAATGTACTATTGATTGCCTTCTTTAATTACTATTACACATTCCTGCAACTGGACCCTGA
rJMSF023J15+ AAATGTACTATTGATTGCCTTCTTTAATTACTATTACACATTCCTGCAACTGGACCCTGA
rJMSF029M23+ AAATGTACTATTGATTGCCTTCTTTAATTACTATTACACATTCCTGCAACTGGACCCTGA
                      ____________________________________________________________
consensus AAATGTACTATTGATTGCCTTCTTTAATTACTATTACACATTCCTGCAACTGGACCCTGA
 
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rJMSF039K10+ CGACATGAGTGAACAGTTGAAGCGACAAGGTGCTTCAATTCCACTTGTCCGACCAGGAAA
rJMSF023K08+ CGACATGAGTGAACAGTTGAAGCGACAAGGTGCTTCAATTCCACTTGTCCGACCAGGAAA
rJMSF001O13+ CGACATGAGTGAACAGTTGAAGCGACAAGGTGCTTCAATTCCACTTGTCCGACCAGGAAA
rJMSF022K08+ CGACATGAGTGAACAGTTGAAGCGACAAGGTGCTTCAATTCCACTTGTCCGACCAGGAAA
rJMSF023J15+ CGACATGAGTGAACAGTTGAAGCGACAAGGTGCTTCAATTCCACTTGTCCGACCAGGAAA
rJMSF029M23+ CGACATGAGTGAACAGTTGAAGCGACAAGGTGCTTCAATTCCACTTGTCCGACCAGGAAA
                      ____________________________________________________________
consensus CGACATGAGTGAACAGTTGAAGCGACAAGGTGCTTCAATTCCACTTGTCCGACCAGGAAA
 
. : . : . : . : . : . :
rJMSF039K10+ GAGTACAGCTGCATTCATCAAAATGGTTCTTAGCCGGATATCAGTTCTCGGTTCTGTATT
rJMSF023K08+ GAGTACAGCTGCATTCATCAAAATGGTTCTTAGCCGGATATCAGTTCTCGGTTCTGTATT
rJMSF001O13+ GAGTACAGCTGCATTCATCAAAATGGTTCTTAGCCGGATATCAGTTCTCGGTTCTGTATT
rJMSF022K08+ GAGTACAGCTGCATTCATCAAAATGGTTCTTAGCCGGATATCAGTTCTCGGTTCTGTATT
rJMSF023J15+ GAGTACAGCTGCATTCATCAAAATGGTTCTTAGCCGGATATCAGTTCTCGGTTCTGTATT
rJMSF029M23+ GAGTACAGCTGCATTCATCAAAATGGTTCTTAGCCGGATATCAGTTCTCGGTTCTGTATT
                      ____________________________________________________________
consensus GAGTACAGCTGCATTCATCAAAATGGTTCTTAGCCGGATATCAGTTCTCGGTTCTGTATT
 
. : . : . : . : . : . :
rJMSF039K10+ TTTGGCTGTTCTTGCTGCTGGTCCTGCTGTGATTGAACAAGCAACACACCTGACTGCTTT
rJMSF023K08+ TTTGGCTGTTCTTGCTGCTGGTCCTGCTGTGATTGAACAAGCAACACACCTGACTGCTTT
rJMSF001O13+ TTTGGCTGTTCTTGCTGCTGGTCCTGCTGTGATTGAACAAGCAACACACCTGACTGCTTT
rJMSF022K08+ TTTGGCTGTTCTTGCTGCTGGTCCTGCTGTGATTGAACAAGCAACACACCTGACTGCTTT
rJMSF023J15+ TTTGGCTGTTCTTGCTGCTGGTCCTGCTGTGATTGAACAAGCAACACACCTGACTGCTTT
rJMSF029M23+ TTTGGCTGTTCTTGCTGCTGGTCCTGCTGTGATTGAACAAGCAACACACCTGACTGCTTT
                      ____________________________________________________________
consensus TTTGGCTGTTCTTGCTGCTGGTCCTGCTGTGATTGAACAAGCAACACACCTGACTGCTTT
 
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rJMSF039K10+ TCGAGGATTTGCGGGCACATCAGTTCTCATTCTTGTTGGCTGTGCCACGGACACAGCACG
rJMSF023K08+ TCGAGGATTTGCGGGCACATCAGTTCTCATTCTTGTTGGCTGTGCCACGGACACAGCACG
rJMSF001O13+ TCGAGGATTTGCGGGCACATCAGTTCTCATTCTTGTTGGCTGTGCCACGGACACAGCACG
rJMSF022K08+ TCGAGGATTTGCGGGCACATCAGTTCTCATTCTTGTTGGCTGTGCCACGGACACAGCACG
rJMSF023J15+ TCGAGGATTTGCGGGCACATCAGTTCTCATTCTTGTTGGCTGTGCCACGGACACAGCACG
rJMSF029M23+ TCGAGGATTTGCGGGCACATCAGTTCTCATTCTTGTTGGCTGTGCCACGGACACAGCACG
                      ____________________________________________________________
consensus TCGAGGATTTGCGGGCACATCAGTTCTCATTCTTGTTGGCTGTGCCACGGACACAGCACG
 
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rJMSF039K10+ CAAAGTTCAGGCAGAGATTATATCCCAGAAGTACAAGAACATTGAATTTTATGACATTGA
rJMSF023K08+ CAAAGTTCAGGCAGAGATTATATCCCAGAAGTACAAGAACATTGAATTTTATGACATTGA
rJMSF001O13+ CAAAGTTCAGGCAGAGATTATATCCCAGAAGTACAAGAACATTGAATTTTATGACATTGA
rJMSF022K08+ CAAAGTTCAGGCAGAGATTATATCCCAGAAGTACAAGAACATTGAATTTTATGACATTGA
rJMSF023J15+ CAAAGTTCAGGCAGAGATTATATCCCAGAAGTACAAGAACATTGAATTTTATGACATTGA
rJMSF029M23+ CAAAGTTCAGGCAGAGATTATATCCCAGAAGTACAAGAACATTGAATTTTATGACATTGA
                      ____________________________________________________________
consensus CAAAGTTCAGGCAGAGATTATATCCCAGAAGTACAAGAACATTGAATTTTATGACATTGA
 
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rJMSF039K10+ CAAGTATGTACCATAGTAGATCCTAACCACTTCAGTTTAAAGTCCGAATGCAGTAAAAAA
rJMSF023K08+ CAAGTATGTACCATAGTAGATCCTAACCACTTCAGTTTAAAGTCCGAATGCAGTAAAAAA
rJMSF001O13+ CAAGTATGTACCATAGTAGATCCTAACCACTTCAGTTTAAAGTCCGAATGCAGTAAAAAA
rJMSF022K08+ CAAGTATGTACCATAGTAGATCCTAACCACTTCAGTTTAAAGTCCGAATGCAGTAAAAAA
rJMSF023J15+ CAAGTATGTACCATAGTAGATCCTAACCACTTCAGTTTAAAGTCCGAATGCAGTAAAAAA
rJMSF029M23+ CAAGTATGTACCATAGTAGATCCTAACCACTTCAGTTTAAAGTCCGAATGCAGTAAAAAA
                      ____________________________________________________________
consensus CAAGTATGTACCATAGTAGATCCTAACCACTTCAGTTTAAAGTCCGAATGCAGTAAAAAA
 
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rJMSF039K10+ CTGCATTTGATTTGATTAAAGACGACTTCTTCGGTGGGCAATCCAGTTTGAGTTCATCTG
rJMSF023K08+ CTGCATTTGATTTGATTAAAGACGACTTCTTCGGTGGGCAATCCAGTTTGAGTTCATCTG
rJMSF001O13+ CTGCATTTGATTTGATTAAAGACGACTTCTTCGGTGGGCAATCCAGTTTGAGTTCATCTG
rJMSF022K08+ CTGCATTTGATTTGATTAAAGACGACTTCTTCGGTGGGCAATCCAGTTTGAGTTCATCTG
rJMSF023J15+ CTGCATTTGATTTGATTAAAGACGACTTCTTCGGTGGGCAATCCAGTTTGAGTTCATCTG
rJMSF029M23+ CTGCATTTGATTTGATTAAAGACGACTTCTTCGGTGGGCAATCCAGTTTGAGTTCATCTG
                      ____________________________________________________________
consensus CTGCATTTGATTTGATTAAAGACGACTTCTTCGGTGGGCAATCCAGTTTGAGTTCATCTG
 
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rJMSF039K10+ GATTTGTGTATTTAACTCAAAC
rJMSF023K08+ GATTTGTGTATTTAACTCAAACTCAAACTGTTTCTTGGTTTAGGTTTTATTATCATTTAT
rJMSF001O13+ GATTTGTGTATTTAACTCAAACTCAAACTGTTTCTTGGTTTAGGTTTTATTATCATTTAT
rJMSF022K08+ GATTTGTGTATTTAACTCAAACTCAAACTGTTTCTTGGTTTAGGTTTTATTATCATTTAT
rJMSF023J15+ GATTTGTGTATTTAACTCAAACTCAAACTGTTTCTTGGTTTAGGTTTTATTATCATTTAT
rJMSF029M23+ GATTTGTGTATTTAACTCAAACTCAAACTGTTTCTTGGTTTAGGTTTTATTATCATTTAT
                      ____________________________________________________________
consensus GATTTGTGTATTTAACTCAAACTCAAACTGTTTCTTGGTTTAGGTTTTATTATCATTTAT
 
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rJMSF023K08+ ATTAGATT
rJMSF001O13+ ATTAGATTTGTAC
rJMSF022K08+ ATTAGATTTGTACATGAGTGAGTACATATTAATATCAAGAACAAA
rJMSF023J15+ ATTAGATTTGTACATGAGTGAGTACATATTAATATCAAGAACAAA
rJMSF029M23+ ATTAGATTTGTACATGAGTGAGTACATATTAATATCAAGAACAAAGAACAGTTCAGTCTT
                      ____________________________________________________________
consensus ATTAGATTTGTACATGAGTGAGTACATATTAATATCAAGAACAAAGAACAGTTCAGTCTT