Contig 002894:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002N07Sequence221012055 (3)ref|NP_001274969.1|8e-09pectin methyl esterase [Solanum tuberosum] gb|AAF23892.1|AF152172_1 pectin methy736002894 (3)sp|P83218.1|PME_DAUCA8e-121RecName: Full=Pectinesterase; Short=PE; AltName: Full=Pectin methylesterase [Da
JMSF016P14Sequence466012055 (3)ref|XP_009606552.1|9e-27PREDICTED: pectinesterase/pectinesterase inhibitor U1 [Nicotiana tomentosiformi746002894 (3)sp|P83218.1|PME_DAUCA3e-122RecName: Full=Pectinesterase; Short=PE; AltName: Full=Pectin methylesterase [Da
JMSF029I18Sequence640012055 (3)ref|XP_009606552.1|5e-60PREDICTED: pectinesterase/pectinesterase inhibitor U1 [Nicotiana tomentosiformi694002894 (3)gb|KDP40627.1|2e-97hypothetical protein JCGZ_24626 [Jatropha curcas]

Alignment

This contig is upended


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rJMSF016P14+                                                 CGCTCCGAGNTGGCTCAGATC
rJMSF002N07+                                                            GGCTCAGATC
                      ____________________________________________________________
consensus                                                    CGCTCCGAGNTGGCTCAGATC
 
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rJMSF016P14+          AGTCGGCGTTCTACCGATGTGGCGTGATCGCGTACCAAGACTCCCTCTATGTTCACTCCA
rJMSF002N07+          AGTCGGCGTTCTACCGATGTGGCGTGATCGCGTACCAAGACTCCCTCTATGTTCACTCCA
                      ____________________________________________________________
consensus             AGTCGGCGTTCTACCGATGTGGCGTGATCGCGTACCAAGACTCCCTCTATGTTCACTCCA
 
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rJMSF016P14+          ACCGTCAATTCTTCGTCAACTGCTACATCGCCGGCACGATCGACTTTATCTTCGGCAATT
rJMSF002N07+          ACCGTCAATTCTTCGTCAACTGCTACATCGCCGGCACGATCGACTTTATCTTCGGCAATT
rJMSF029I18+                                    ATCGCCGGCACGATCGACTTTATCTTCGGCAATT
                      ____________________________________________________________
consensus             ACCGTCAATTCTTCGTCAACTGCTACATCGCCGGCACGATCGACTTTATCTTCGGCAATT
 
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rJMSF016P14+          CCGCGGTGGTTCTCCAAGATTGTGACATCCACGCCCGCCGCCCCGGGTCGAGGCAAAAGA
rJMSF002N07+          CCGCGGTGGTTCTCCAAGATTGTGACATCCACGCCCGCCGCCCCGGGTCGAGGCAAAAGA
rJMSF029I18+          CCGCGGTGGTTCTCCAAGATTGTGACATCCACGCCCGCCGCCCCGGGTCGAGGCAAAAGA
                      ____________________________________________________________
consensus             CCGCGGTGGTTCTCCAAGATTGTGACATCCACGCCCGCCGCCCCGGGTCGAGGCAAAAGA
 
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rJMSF016P14+          ATATGGTCACGGCCCAGGGGAGAACGGACCCAAACCAAAACACCGGAATCGTGATTCAGA
rJMSF002N07+          ATATGGTCACGGCCCAGGGGAGAACGGACCCAAACCAAAACACCGGAATCGTGATTCAGA
rJMSF029I18+          ATATGGTCACGGCCCAGGGGAGAACGGACCCAAACCAAAACACCGGAATCGTGATTCAGA
                      ____________________________________________________________
consensus             ATATGGTCACGGCCCAGGGGAGAACGGACCCAAACCAAAACACCGGAATCGTGATTCAGA
 
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rJMSF016P14+          AGTCCAGGATCGGAGCCACTTCCGACCTGAAGCCGGTCCAGAAGCAGTTCCCGACGTTCC
rJMSF002N07+          AGTCCAGGATCGGAGCCACTTCCGACCTGAAGCCGGTCCAGAAGCAGTTCCCGACGTTCC
rJMSF029I18+          AGTCCAGGATCGGAGCCACTTCCGACCTGAAGCCGGTCCAGAAGCAGTTCCCGACGTTCC
                      ____________________________________________________________
consensus             AGTCCAGGATCGGAGCCACTTCCGACCTGAAGCCGGTCCAGAAGCAGTTCCCGACGTTCC
 
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rJMSF016P14+          TAGGCCGACCATGGAAGGAATACTCTAGAACCGTTGTTATGCAGAGTTCAATCACCGACG
rJMSF002N07+          TAGGCCGACCATGGAAGGAATACTCTAGAACCGTTGTTATGCAGAGTTCAATCACCGACG
rJMSF029I18+          TAGGCCGACCATGGAAGGAATACTCTAGAACCGTTGTTATGCAGAGTTCAATCACCGACG
                      ____________________________________________________________
consensus             TAGGCCGACCATGGAAGGAATACTCTAGAACCGTTGTTATGCAGAGTTCAATCACCGACG
 
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rJMSF016P14+          TGATTGACCCCGCCGGCTGGCATATATGGGACGGAAATTTCGCCCTCAATACATTAGTGT
rJMSF002N07+          TGATTGACCCCGCCGGCTGGCATATATGGGACGGAAATTTCGCCCTCAATACATTGGTGT
rJMSF029I18+          TGATTGACCCCGCCGGCTGGCATATATGGGACGGAAATTTCGCCCTCAATACATTAGTGT
                      ____________________________________________________________
consensus             TGATTGACCCCGCCGGCTGGCATATATGGGACGGAAATTTCGCCCTCAATACATTAGTGT
 
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rJMSF016P14+          ACCGAGAATACAGGAACACCGGCGCCGGAGCTGGCACATCTAGGAGAGTTAATTGGAAAG
rJMSF002N07+          ACCGAGAATACAGGAACACCGGCGCCGGAGCTGGCACATCTAGGAGAGTTAATTGGAAAG
rJMSF029I18+          ACCGAGAATACAGGAACACCGGCGCCGGAGCTGGCACATCTAGGAGAGTTAATTGGAAAG
                      ____________________________________________________________
consensus             ACCGAGAATACAGGAACACCGGCGCCGGAGCTGGCACATCTAGGAGAGTTAATTGGAAAG
 
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rJMSF016P14+          GATTTAAAGTCATCACCAGCTCCGCAGAGGCCGCATCCTACACCCCCGGTGCGTTCATAG
rJMSF002N07+          GATTTAAAGTCATCACCAGCTCCGCAGAGGCCGCATCCTACACCCCCGGTGCGTTCATAG
rJMSF029I18+          GATTTAAAGTCATCACCAGCTCCGCAGAGGCCGCATCCTACACCCCCGGTGCGTTCATAG
                      ____________________________________________________________
consensus             GATTTAAAGTCATCACCAGCTCCGCAGAGGCCGCATCCTACACCCCCGGTGCGTTCATAG
 
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rJMSF016P14+          CCGGCGGTAACTGGTTGAGGGGAACCGGGTTCCCATTCTCTTTGGGCCTTTAATGCCAGT
rJMSF002N07+          CCGGCGGTAACTGGTTGAGGGGAACCGGGTTCCCATTCTCTTTGGGCCTTTAATGCCAGT
rJMSF029I18+          CCGGCGGTAACTGGTTGAGGGGAACCGGGTTCCCATTCTCTTTGGGCCTTTAATGCCAGT
                      ____________________________________________________________
consensus             CCGGCGGTAACTGGTTGAGGGGAACCGGGTTCCCATTCTCTTTGGGCCTTTAATGCCAGT
 
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rJMSF016P14+          CTGTTTAGTATTGGGTCAGCCTGCAGTGGCGACAGCCAATAAAACATAGTTTAGTTTTCT
rJMSF002N07+          CTGTTTAGTATTGGGTCAGCCTGCAGTGGCGACAGCCAATAAAACATAGTTTAGTTTTCT
rJMSF029I18+          CTGTTTAGTATTGGGTCAGCCTGCAGTGGCGACAGCCAATAAAACATAGTTTAGTTTTCT
                      ____________________________________________________________
consensus             CTGTTTAGTATTGGGTCAGCCTGCAGTGGCGACAGCCAATAAAACATAGTTTAGTTTTCT
 
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rJMSF016P14+          CGTCCATGGCAAATAATTGTGGATCGTGCTCCACACAGCTTTGTGAATCAC         
rJMSF002N07+          CGTCCATGGCAAATAATTGTGGATCGTGCTCCACACAGCTTTGTGAATCAC         
rJMSF029I18+          CGTCCATGGCAAATAATTGTGGATCGTGCTCCACACAGCTTTGTGAATCACGGTTCAAAA
                      ____________________________________________________________
consensus             CGTCCATGGCAAATAATTGTGGATCGTGCTCCACACAGCTTTGTGAATCACGGTTCAAAA
 
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rJMSF029I18+          AGACGTTGAATTTTATGAGTTAGAATAATATATTGTATGTGTTAGAAAAATGAAACTTAT
                      ____________________________________________________________
consensus             AGACGTTGAATTTTATGAGTTAGAATAATATATTGTATGTGTTAGAAAAATGAAACTTAT