Contig 002893:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS153E12Sequence612002893 (4)ref|XP_002324001.2|4e-28hypothetical protein POPTR_0017s10720g [Populus trichocarpa] gb|EEF04134.2| hypo
JMSF021I01Sequence691000730 (4)gb|KCW55915.1|2e-25hypothetical protein EUGRSUZ_I01713 [Eucalyptus grandis]759002893 (4)ref|XP_010029073.1|110PREDICTED: uncharacterized protein LOC104419196 [Eucalyptus grandis] gb|KCW55917
JMSF029E13Sequence686000730 (4)gb|KCW55915.1|2e-25hypothetical protein EUGRSUZ_I01713 [Eucalyptus grandis]711002893 (4)ref|XP_002324001.2|3e-19hypothetical protein POPTR_0017s10720g [Populus trichocarpa] gb|EEF04134.2| hypo
JMSF031L05Sequence656000730 (4)gb|KCW55915.1|1e-25hypothetical protein EUGRSUZ_I01713 [Eucalyptus grandis]571002893 (4)ref|XP_004288435.1|62.4PREDICTED: uncharacterized protein LOC101298064 [Fragaria vesca subsp. vesca]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS153E12- GGCATGATATTGGCATGGGGAGCTGACGCTTCCCCTTTTGACACATACAAA
                      ____________________________________________________________
consensus GGCATGATATTGGCATGGGGAGCTGACGCTTCCCCTTTTGACACATACAAA
 
. : . : . : . : . : . :
JMFS153E12- GAAGAATGTCTTTGGAGGGTGGAGACTTGGGGAACTGCACTTGTGGCCGGTACCATCGAC
                      ____________________________________________________________
consensus GAAGAATGTCTTTGGAGGGTGGAGACTTGGGGAACTGCACTTGTGGCCGGTACCATCGAC
 
. : . : . : . : . : . :
JMFS153E12- CCGATTCGCCAATGGATTAATGCAAGCACTACACAAGGAGTGGGGAAGAATTTCATTTTC
                      ____________________________________________________________
consensus CCGATTCGCCAATGGATTAATGCAAGCACTACACAAGGAGTGGGGAAGAATTTCATTTTC
 
. : . : . : . : . : . :
JMFS153E12- TTGTATGGAGGGAACAACATTGAATGGGCTCGGGAATTCAATGCCAAGGTAAAATCATCA
rJMSF021I01+ GGGAACAACATTGAATGGGCTCGGGAATTCAATGCCAAGGTAAAATCATCA
                      ____________________________________________________________
consensus TTGTATGGAGGGAACAACATTGAATGGGCTCGGGAATTCAATGCCAAGGTAAAATCATCA
 
. : . : . : . : . : . :
JMFS153E12- CTTTCATCGGACATTGAACCAAAGATGATATATGTTGGAAAAAACAAGGAGGTAAGATCA
rJMSF021I01+ CTTTCATCGGACATTGAACCAAAGATGATATATGTTGGAAAAAACAAGGAGGTAAGATCA
rJMSF029E13+ TGAACCAAAGATGATATATGTTGGAAAAACCAAGGAGGTAAGATCA
                      ____________________________________________________________
consensus CTTTCATCGGACATTGAACCAAAGATGATATATGTTGGAAAAAACAAGGAGGTAAGATCA
 
. : . : . : . : . : . :
JMFS153E12- AAACTCGGCCCAAGCGAAAGCTTGGATGGCCCCTCCACGTGGCTCTTTTGGGCTCGCTTA
rJMSF021I01+ AAACTCGGCCCAAGCGAAAGCTTGGATGGCCCCTCCACGTGGCTCTTTTGGGCTCGCTTA
rJMSF031L05+ GCTCGNTTA
rJMSF029E13+ AAACTCGGCCCAAGCGAAAGCTTGGATGGCCCCTCCACGTGGCTCTTTTGGGCTCGCTTA
                      ____________________________________________________________
consensus AAACTCGGCCCAAGCGAAAGCTTGGATGGCCCCTCCACGTGGCTCTTTTGGGCTCGCTTA
 
. : . : . : . : . : . :
JMFS153E12- AAAAGCATGTTATTGTCAAGGATATACTATCTAAAAAAGACGAGTTCTAAAGATGCAAAC
rJMSF021I01+ AAAAGCATGTTATTGTCAAGGATATACTATCTAAAAAAGACGAGTTCTAAAGATGCAAAC
rJMSF031L05+ AAAAGCATGTTATNGTCAAGGATNTACTATNTAAAAAAGACGAGTTCTAAAGATGCAACC
rJMSF029E13+ AAAAGCATGTTATTGTCAAGGATATACTATCTAAAAAAGACGAGTTCTAAAGATGCAAAC
                      ____________________________________________________________
consensus AAAAGCATGTTATTGTCAAGGATATACTATCTAAAAAAGACGAGTTCTAAAGATGCAAAC
 
. : . : . : . : . : . :
JMFS153E12- GATGAAATTGTGAAAGGACTCAAATCTTTACTTGCTCATGAAGCTCCCGCTGAAATTGGA
rJMSF021I01+ GATGAAATTGTGAAAGGACTCAAATCTTTACTTGCTCATGAAGCTCCCGCTGAAATTGGA
rJMSF031L05+ GATGAAATTGTGAAAGGACTCAAATCTTTACTTGCTCATGAAGCTCCCGCTGAAATTGGA
rJMSF029E13+ GATGAAATTGTGAAAGGACTCAAATCTTTACTTGCTCATGAAGCTCCCGCTGAAATTGGA
                      ____________________________________________________________
consensus GATGAAATTGTGAAAGGACTCAAATCTTTACTTGCTCATGAAGCTCCCGCTGAAATTGGA
 
. : . : . : . : . : . :
JMFS153E12- GGGTGGTCCTTGTTATGCACAAAGGACAAGGTGGT-CCGATGTGGTGACGGAGAAAAAAT
rJMSF021I01+ GGGTGGTCCTTGTTATGCACAAAGGACAAGGTGGT-CCGATGTGGTGACGGAGAAAAAAT
rJMSF031L05+ GGGTGGTCCTTGTTATGCACAAAGGACAAGGTGGTCCCGATGTGGTGACGGAGAAAAAAT
rJMSF029E13+ GGGTGGTCCTTGTTATGCACAAAGGACAAGGTGGT-CCGATGTGGTGACGGAGAAAAAAT
                      ____________________________________________________________
consensus GGGTGGTCCTTGTTATGCACAAAGGACAAGGTGGT-CCGATGTGGTGACGGAGAAAAAAT
 
. : . : . : . : . : . :
JMFS153E12- GTTGAAAGTCATGACTGATTACGAAACATGGAAAGGAAATGTGAAGGATAAAGATTTTCA
rJMSF021I01+ GTTGAAAGTCATGACTGATTACGAAACATGGAAAGGAAATGTGAAGGATAAAGATTTTCA
rJMSF031L05+ GTTGAAAGTCATGACTGATTACGAAACATGGAAAGGAAATGTGAAGGATAAAGATTTTCA
rJMSF029E13+ GTTGAAAGTCATGACTGATTACGAAACATGGAAAGGAAATGTGAAGGATAAAGATTTTCA
                      ____________________________________________________________
consensus GTTGAAAGTCATGACTGATTACGAAACATGGAAAGGAAATGTGAAGGATAAAGATTTTCA
 
. : . : . : . : . : . :
JMFS153E12- CGAGGCATTTGACGAGTACTAT
rJMSF021I01+ CGAGGCATTTGACGAGTACTATAGAAACTTTTCTTTTACTCCGCAACACCAACATTGTTG
rJMSF031L05+ CGAGGCATTTGACGAGTACTATAGAAACTTTTCTTTTNCTNCGCAACACCAACATTGTTG
rJMSF029E13+ CGAGGCATTTGACGAGTACTATAGAAACTTTTCTTTTACTCCGCAACACCAACATTGTTG
                      ____________________________________________________________
consensus CGAGGCATTTGACGAGTACTATAGAAACTTTTCTTTTACTCCGCAACACCAACATTGTTG
 
. : . : . : . : . : . :
rJMSF021I01+ TGGACTCGAATATCCTTATGAACTTGAAAGCACTATAATTCCTTTTATAAGCATCATCCC
rJMSF031L05+ TGGACTCGAATATCCTTATGAACTTGAAAGCACTATAATTCCTTTTATAAGCATCATCCC
rJMSF029E13+ TGGACTCGAATATCCTTATGAACTTGAAAGCACTATAATTCCTTTTATAAGCATCATCCC
                      ____________________________________________________________
consensus TGGACTCGAATATCCTTATGAACTTGAAAGCACTATAATTCCTTTTATAAGCATCATCCC
 
. : . : . : . : . : . :
rJMSF021I01+ AGAGAAGGAGAAATGTCCCGATTGTAGTACGGATATGTACAAACTCATAACTTTCTTATG
rJMSF031L05+ AGAGAAGGAGAAATGTCCCGATTGTAGTACGGATATGTACAAACTCATAACTTTCTTATG
rJMSF029E13+ AGAGAAGGAGAAATGTCCCGATTGTAGTACGGATATGTACAAACTCATAACTTTCTTATG
                      ____________________________________________________________
consensus AGAGAAGGAGAAATGTCCCGATTGTAGTACGGATATGTACAAACTCATAACTTTCTTATG
 
. : . : . : . : . : . :
rJMSF021I01+ CTGCCATCAGCATGATGACTATGATGTGGAAGAAGAAAGAGAGGATGATGCAATCAGTAA
rJMSF031L05+ CTGCCATCAGCATGATGACTATGATGTGGAAGAAGAAAGAGAGGATGATGCAATCAGTAA
rJMSF029E13+ CTGCCATCAGCATGATGACTATGATGTGGAAGAAGAAAGAGAGGATGATGCAATCAGTAA
                      ____________________________________________________________
consensus CTGCCATCAGCATGATGACTATGATGTGGAAGAAGAAAGAGAGGATGATGCAATCAGTAA
 
. : . : . : . : . : . :
rJMSF021I01+ ATAGAAACATTGTGTTTGAACACATCATATCCATAAAAGGCATGTCATGTGTGCTTAGCT
rJMSF031L05+ ATAGAAACATTGTGTTTGAACACATCATATCCATAAAAGGCATGTCATGTGTGCTTAGCT
rJMSF029E13+ ATAGAAACATTGTGTTTGAACACATCATATCCATAAAAGGCATGTCATGTGTGCTTAGCT
                      ____________________________________________________________
consensus ATAGAAACATTGTGTTTGAACACATCATATCCATAAAAGGCATGTCATGTGTGCTTAGCT
 
. : . : . : . : . : . :
rJMSF021I01+ TTCTAGCTAATTAATTGTTTT
rJMSF031L05+ TTCTAGCTAATTAATTGTTTT
rJMSF029E13+ TTCTAGCTAATTAATTGTTTTTGGCAGCACAAATACTAAATTTCTATTTTGTGTGTTTTT
                      ____________________________________________________________
consensus TTCTAGCTAATTAATTGTTTTTGGCAGCACAAATACTAAATTTCTATTTTGTGTGTTTTT