clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF009G24 | Sequence | 580 | 010170 (2) | ref|XP_009775110.1| | 5e-37 | PREDICTED: uroporphyrinogen decarboxylase, chloroplastic-like isoform X2 [Nicot | 721 | 002892 (2) | ref|XP_009610649.1| | 5e-93 | PREDICTED: uroporphyrinogen decarboxylase, chloroplastic [Nicotiana tomentosifo |
JMSF028O11 | Sequence | 626 | 010170 (2) | ref|XP_009775109.1| | 7e-70 | PREDICTED: uroporphyrinogen decarboxylase, chloroplastic-like isoform X1 [Nicot | 725 | 002892 (2) | ref|XP_009610649.1| | 3e-105 | PREDICTED: uroporphyrinogen decarboxylase, chloroplastic [Nicotiana tomentosifo |
This contig is upended
. : . : . : . : . : . :
rJMFF009G24+ AAA
____________________________________________________________
consensus AAA
. : . : . : . : . : . :
rJMFF009G24+ TAAAAAAGCTAGCTTTCTCACAGCCCAAGGTCCTTCACGCACTTCTTCAAAAATTTGCAA
rJMSF028O11+ TTGCAA
____________________________________________________________
consensus TAAAAAAGCTAGCTTTCTCACAGCCCAAGGTCCTTCACGCACTTCTTCAAAAATTTGCAA
. : . : . : . : . : . :
rJMFF009G24+ CCTCTATGGCTAAATATATACGATACCAAGCTGACAACGGAGCTCCAGGTGGTTCAGATA
rJMSF028O11+ CCTCTATGGCTAAATATATACGATACCAAGCTGACAACGGAGCT-CAGGTGGTTCAGATA
____________________________________________________________
consensus CCTCTATGGCTAAATATATACGATACCAAGCTGACAACGGAGCTCCAGGTGGTTCAGATA
. : . : . : . : . : . :
rJMFF009G24+ TTTGATTCGTGGGCCACTGAACTTAGCCCCGTGGATTTTGAAGAGTTCAGTCTCCCTTAC
rJMSF028O11+ TTTGATTCGTGGGCCACTGAACTTAGCCCCGTGGATTTTGAAGAGTTCAGTCTCCCTTAC
____________________________________________________________
consensus TTTGATTCGTGGGCCACTGAACTTAGCCCCGTGGATTTTGAAGAGTTCAGTCTCCCTTAC
. : . : . : . : . : . :
rJMFF009G24+ TTGAAGCAGATTGTAGATTCGGTTAAACAAACTCATCCAGATTTACCGCTGATCCTATAT
rJMSF028O11+ TTGAAGCAGATTGTAGATTCGGTTAAACAAACTCATCCAGATTTACCGCTGATCCTATAT
____________________________________________________________
consensus TTGAAGCAGATTGTAGATTCGGTTAAACAAACTCATCCAGATTTACCGCTGATCCTATAT
. : . : . : . : . : . :
rJMFF009G24+ GCCAGCGGATCAGGGGGTTTGCTCGAGAGACTACCGGCGACAGGAGTTGATGTCGTGAGC
rJMSF028O11+ GCCAGCGGATCAGGGGGTTTGCTCGAGAGACTACCGGCGACAGGAGTTGATGTCGTGAGC
____________________________________________________________
consensus GCCAGCGGATCAGGGGGTTTGCTCGAGAGACTACCGGCGACAGGAGTTGATGTCGTGAGC
. : . : . : . : . : . :
rJMFF009G24+ TTGGATTGGACCGTGGATATGGCTGATGGTAGGAGAAGATTGGGTCCTGATGTGGCGGTG
rJMSF028O11+ TTGGATTGGACCGTGGATATGGCTGATGGTAGGAGAAGATTGGGTCCTGATGTGGCGGTG
____________________________________________________________
consensus TTGGATTGGACCGTGGATATGGCTGATGGTAGGAGAAGATTGGGTCCTGATGTGGCGGTG
. : . : . : . : . : . :
rJMFF009G24+ CAGGGCAACGTGGATCCTGGCGTTCTTTTTGGCTCCAAGGAATTCATCACCAATCGCATA
rJMSF028O11+ CAGGGCAACGTGGATCCTGGCGTTCTTTTTGGCTCCAAGGAATTCATCACCAATCGCATA
____________________________________________________________
consensus CAGGGCAACGTGGATCCTGGCGTTCTTTTTGGCTCCAAGGAATTCATCACCAATCGCATA
. : . : . : . : . : . :
rJMFF009G24+ AACGACACGGTTAGAAAAGCTGGTCGAGGAAAACATATTTTGAACCTTGGACATGGCATC
rJMSF028O11+ AACGACACGGTTAGAAAAGCTGGTCGAGGAAAACATATTTTGAACCTTGGACATGGCATC
____________________________________________________________
consensus AACGACACGGTTAGAAAAGCTGGTCGAGGAAAACATATTTTGAACCTTGGACATGGCATC
. : . : . : . : . : . :
rJMFF009G24+ AAGGTAGGTACACCCGAGGAAAATGTTGCCCACTTTTTTGAGGTTGCCAAAGGACTTAGG
rJMSF028O11+ AAGGTAGGTACACCCGAGGAAAATGTTGCCCACTTTTTTGAGGTTGCCAAAGGACTTAGG
____________________________________________________________
consensus AAGGTAGGTACACCCGAGGAAAATGTTGCCCACTTTTTTGAGGTTGCCAAAGGACTTAGG
. : . : . : . : . : . :
rJMFF009G24+ TATTAGAATGCAATCAGATGTTAAACTTATGTGATAGATTGTTGAGAAGTAGGTGCAACT
rJMSF028O11+ TATTAGAATGCAATCAGATGTTAAACTTATGTGATAGATTGTTGAGAAGTAGGTGCAACT
____________________________________________________________
consensus TATTAGAATGCAATCAGATGTTAAACTTATGTGATAGATTGTTGAGAAGTAGGTGCAACT
. : . : . : . : . : . :
rJMFF009G24+ GTGCAAGAGAGTATTGTCACTGCCTTCAAAGGTTAGTACTCAGTAGATTAGCTTTTGAAG
rJMSF028O11+ GTGCAAGAGAGTATTGTCACTGCCTTCAAAGGTTAGTACTCAGTAGATTAGCTTTTGAAG
____________________________________________________________
consensus GTGCAAGAGAGTATTGTCACTGCCTTCAAAGGTTAGTACTCAGTAGATTAGCTTTTGAAG
. : . : . : . : . : . :
rJMFF009G24+ TTTTTGTTAAACTATGAGCTTAATCCTCAGCATTGAACTATGGCCATGATTTTCATAT
rJMSF028O11+ TTTTTGTTAAACTATGAGCTTAATCCTCAGCATTGAACTATGGCCATGATTTTCATATTA
____________________________________________________________
consensus TTTTTGTTAAACTATGAGCTTAATCCTCAGCATTGAACTATGGCCATGATTTTCATATTA
. : . : . : . : . : . :
rJMSF028O11+ TATTTTAAAATGTATTTATATATTTGGAGAAGAAAGGGTGTAAAATGTTATATATACACA
____________________________________________________________
consensus TATTTTAAAATGTATTTATATATTTGGAGAAGAAAGGGTGTAAAATGTTATATATACACA