Contig 002891:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019F23Sequence465002271 (5)emb|CDP09162.1|4e-08unnamed protein product [Coffea canephora]788002891 (3)ref|XP_009616257.1|9e-60PREDICTED: ATP-dependent zinc metalloprotease FTSH 9, chloroplastic-like isofor
JMSF026N08Sequence652002271 (5)emb|CDP09162.1|6e-30unnamed protein product [Coffea canephora]765002891 (3)ref|XP_009616257.1|2e-56PREDICTED: ATP-dependent zinc metalloprotease FTSH 9, chloroplastic-like isofor
JMSF028L07Sequence672002271 (5)emb|CDP09162.1|8e-33unnamed protein product [Coffea canephora]799002891 (3)ref|XP_009616257.1|1e-59PREDICTED: ATP-dependent zinc metalloprotease FTSH 9, chloroplastic-like isofor

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF019F23+ CTACTGGC
rJMSF028L07+ CTGGACGTGTTCTACTGGC
                      ____________________________________________________________
consensus CTGGACGTGTTCTACTGGC
 
. : . : . : . : . : . :
rJMSF019F23+ GCACTTGATGACATACGTCGTGCCACAGATATGGCGTACAAGGCAATTGCTGAATATGGT
rJMSF026N08+ GACATACGTCGTGCCACAGATATGGCGTACAAGGCAATTGCTGAATATGGT
rJMSF028L07+ GCACNTGATGACATACGTCGTGCCACAGATATGGCGTACAAGGCAATTGCTGAATATGGT
                      ____________________________________________________________
consensus GCACTTGATGACATACGTCGTGCCACAGATATGGCGTACAAGGCAATTGCTGAATATGGT
 
. : . : . : . : . : . :
rJMSF019F23+ CTGAATGAGACAATAGGTCCTGTTTCACTGGCAACTCTTTCTGGTGGTGGGATGGATGAT
rJMSF026N08+ CTGAATGAGACAATAGGTCCTGTTTCACTGGCAACTCTTTCTGGTGGTGGGATGGATGAT
rJMSF028L07+ CTGAATGAGACAATAGGTCCTGTTTCACTGGCAACTCTTTCTGGTGGTGGGATGGATGAT
                      ____________________________________________________________
consensus CTGAATGAGACAATAGGTCCTGTTTCACTGGCAACTCTTTCTGGTGGTGGGATGGATGAT
 
. : . : . : . : . : . :
rJMSF019F23+ ACAGGATCTGCACTTTGGGGAAGGGATCAGGGGCATCTTGTTGATCTTGTTCAAAGAGAA
rJMSF026N08+ ACAGGATCTGCACTTTGGGGAAGGGATCAGGGGCATCTTGTTGATCTTGTTCAAAGAGAA
rJMSF028L07+ ACAGGATCTGCACTTTGGGGAAGGGATCAGGGGCATCTTGTTGATCTTGTTCAAAGAGAA
                      ____________________________________________________________
consensus ACAGGATCTGCACTTTGGGGAAGGGATCAGGGGCATCTTGTTGATCTTGTTCAAAGAGAA
 
. : . : . : . : . : . :
rJMSF019F23+ GTTAAATCCCTCCTCCAATCTTCACTTGAAGTTGCACTCTGTGTTGTGCGTGCCAATCCT
rJMSF026N08+ GTTAAATCCCTCCTCCAATCTTCACTTGAAGTTGCACTCTGTGTTGTGCGTGCCAATCCT
rJMSF028L07+ GTTAAATCCCTCCTCCAATCTTCACTTGAAGTTGCACTCTGTGTTGTGCGTGCCAATCCT
                      ____________________________________________________________
consensus GTTAAATCCCTCCTCCAATCTTCACTTGAAGTTGCACTCTGTGTTGTGCGTGCCAATCCT
 
. : . : . : . : . : . :
rJMSF019F23+ ACTGTTTTGGAGGGTCTGGGAGCATGTTTGGAAGAGAAAGAGAAAGTAGAAGGTGAGGAA
rJMSF026N08+ ACTGTTTTGGAGGGTCTGGGAGCATGTTTGGAAGAGAAAGAGAAAGTAGAAGGTGAGGAA
rJMSF028L07+ ACTGTTTTGGAGGGTCTGGGAGCATGTTTGGAAGAGAAAGAGAAAGTAGAAGGTGAGGAA
                      ____________________________________________________________
consensus ACTGTTTTGGAGGGTCTGGGAGCATGTTTGGAAGAGAAAGAGAAAGTAGAAGGTGAGGAA
 
. : . : . : . : . : . :
rJMSF019F23+ CTGCAAAAGTGGCTGAAGATGGTTGTTGCTCCAACAGAACTCGCATATTTCATCAGAGGT
rJMSF026N08+ CTGCAAAAGTGGCTGAAGATGGTTGTTGCTCCAACAGAACTCGCATATTTCATCAGAGGT
rJMSF028L07+ CTGCAAAAGTGGCTGAAGATGGTTGTTGCTCCAACAGAACTCGCATATTTCATCAGAGGT
                      ____________________________________________________________
consensus CTGCAAAAGTGGCTGAAGATGGTTGTTGCTCCAACAGAACTCGCATATTTCATCAGAGGT
 
. : . : . : . : . : . :
rJMSF019F23+ AAGCGGGGATCTGTTCTCCCACTGCAACCTAGTTCAGGATGAAATCATATTATAAAATGA
rJMSF026N08+ AAGCGGGGATCTGTTCTCCCACTGCAACCTAGTTCAGGATGAAATCATATTATAAAATGA
rJMSF028L07+ AAGCGGGGATCTGTTCTCCCACTGCAACCTAGTTCAGGATGAAATCATATTATAAAATGA
                      ____________________________________________________________
consensus AAGCGGGGATCTGTTCTCCCACTGCAACCTAGTTCAGGATGAAATCATATTATAAAATGA
 
. : . : . : . : . : . :
rJMSF019F23+ CGCACTTTGAATACCCACATCGGCCTCATCTCTTCATTCTCAACCCGATGGTGGGCACTG
rJMSF026N08+ CGCACTTTGAATACCCACATCGGCCTCATCTCTTCATTCTCAACCCGATGGTGGGCACTG
rJMSF028L07+ CGCACTTTGAATACCCACATCGGCCTCATCTCTTCATTCTCAACCCGATGGTGGGCACTG
                      ____________________________________________________________
consensus CGCACTTTGAATACCCACATCGGCCTCATCTCTTCATTCTCAACCCGATGGTGGGCACTG
 
. : . : . : . : . : . :
rJMSF019F23+ GGCATGGCATGAATTCACTCTTTCACCTTGTATTAGTTCGGTAAAGAGTTTGTCTTGACA
rJMSF026N08+ GGCATGGCATGAATTCACTCTTTCACCTTGTATTAGTTCGGTAAAGAGTTTGTCTTGACA
rJMSF028L07+ GGCATGGCATGAATTCACTCTTTCACCTTGTATTAGTTCGGTAAAGAGTTTGTCTTGACA
                      ____________________________________________________________
consensus GGCATGGCATGAATTCACTCTTTCACCTTGTATTAGTTCGGTAAAGAGTTTGTCTTGACA
 
. : . : . : . : . : . :
rJMSF019F23+ TCAAGCTCCTTGTATATCTATTACCTACCATGATGATCAGCTTTGTAGTTATAAAGGCAA
rJMSF026N08+ TCAAGCTCCTTGTATATCTATTACCTACCATGATGATCAGCTTTGTAGTTATAAAGGCAA
rJMSF028L07+ TCAAGCTCCTTGTATATCTATTACCTACCATGATGATCAGCTTTGTAGTTATAAAGGCAA
                      ____________________________________________________________
consensus TCAAGCTCCTTGTATATCTATTACCTACCATGATGATCAGCTTTGTAGTTATAAAGGCAA
 
. : . : . : . : . : . :
rJMSF019F23+ ATGGCTGAAGAAGATCTAATTACGATATATGGAAGGAATATTTTCGTGAAGCTCAGCTTT
rJMSF026N08+ ATGGCTGAAGAAGATCTAATTACGATATATGGAAGGAATATTTTCGTGAAGCTCAGCTTT
rJMSF028L07+ ATGGCTGAAGAAGATCTAATTACGATATATGGAAGGAATATTTTCGTGAAGCTCAGCTTT
                      ____________________________________________________________
consensus ATGGCTGAAGAAGATCTAATTACGATATATGGAAGGAATATTTTCGTGAAGCTCAGCTTT
 
. : . : . : . : . : . :
rJMSF019F23+ GAAAAGAAGATTCTCCTACGTTATAAAATAATTTTCTTGTACATCTCTCGTTTGTTAGTG
rJMSF026N08+ GAAAAGAAGATTCTCCTACGTTATAAAATAATTTTCTTGTACATCTCTCGTTTGTTAGTG
rJMSF028L07+ GAAAAGAAGATTCTCCTACGTTATAAAATAATTTTCTTGTACATCTCTCGTTTGTTAGTG
                      ____________________________________________________________
consensus GAAAAGAAGATTCTCCTACGTTATAAAATAATTTTCTTGTACATCTCTCGTTTGTTAGTG
 
. : . : . : . : . : . :
rJMSF019F23+ AGCAGTCATGTGTAATATACCCAGTATATAATCCATTTCTTTGGCGAAC
rJMSF026N08+ AGCAGTCATGTGTAATATACCCAGTATATAATCCATTTCTTTGGCGAAC
rJMSF028L07+ AGCAGTCATGTGTAATATACCCAGTATATAATCCATTTCTTTGGCGAACCAAGTTGTGTA
                      ____________________________________________________________
consensus AGCAGTCATGTGTAATATACCCAGTATATAATCCATTTCTTTGGCGAACCAAGTTGTGTA