Contig 002890:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006D15Sequence383002890 (7)ref|XP_002273793.1|2e-32PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Vitis vinifera] emb|CBI
JMSF022I21Sequence681002890 (7)ref|XP_009763745.1|1e-72PREDICTED: protoporphyrinogen oxidase, chloroplastic isoform X2 [Nicotiana sylv763002890 (7)dbj|BAA34713.1|1e-115plastidal protoporphyrinogen oxidase [Nicotiana tabacum]
JMSF025J21Sequence668002890 (7)ref|XP_009763745.1|1e-76PREDICTED: protoporphyrinogen oxidase, chloroplastic isoform X2 [Nicotiana sylv767002890 (7)emb|CDP17037.1|8e-85unnamed protein product [Coffea canephora]
JMSF028K05Sequence660002890 (7)ref|XP_009763745.1|3e-126PREDICTED: protoporphyrinogen oxidase, chloroplastic isoform X2 [Nicotiana sylv688002890 (7)dbj|BAA34713.1|4e-65plastidal protoporphyrinogen oxidase [Nicotiana tabacum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF022I21- GGGAAAGAAGGATAACGTCCAGGAGACTAGCTGAGTGGTAGAAGCTACTAAGCCAG
JMSF025J21- AGAAGCTACTAAGCCAG
                      ____________________________________________________________
consensus GGGAAAGAAGGATAACGTCCAGGAGACTAGCTGAGTGGTAGAAGCTACTAAGCCAG
 
. : . : . : . : . : . :
JMSF022I21- AAACAAACGCATTGCTCCTCCGATTCTATGCCTTCATGCACCATGTCTTTGGCTCCATTG
JMSF025J21- AAACAAACGCATTGCTCCTCCGATTCTATGCCTTCATGCACCATGTCTTTGGCTCCATTG
                      ____________________________________________________________
consensus AAACAAACGCATTGCTCCTCCGATTCTATGCCTTCATGCACCATGTCTTTGGCTCCATTG
 
. : . : . : . : . : . :
JMSF022I21- AACCACAGTGCAGTCGCTACCAGCATTTTCCCTCACCTATGTCCTCCGTCCTCCTCCCCA
JMSF025J21- AACCACAGTGCAGTCGCTACCAGCATTTTCCCTCACCTATGTCCTCCGTCCTCCTCCCCA
                      ____________________________________________________________
consensus AACCACAGTGCAGTCGCTACCAGCATTTTCCCTCACCTATGTCCTCCGTCCTCCTCCCCA
 
. : . : . : . : . : . :
JMSF022I21- TCATCCTTTTCACTGCCATCATTCAACCCTGCGCTCAACCTCAAACGCAGAAATTCTACT
JMSF025J21- TCATCCTTTTCACTGCCATCATTCAACCCTGCGCTCAACCTCAAACGCAGAAATTCTACT
                      ____________________________________________________________
consensus TCATCCTTTTCACTGCCATCATTCAACCCTGCGCTCAACCTCAAACGCAGAAATTCTACT
 
. : . : . : . : . : . :
JMSF022I21- GGTTGGAGAGTTCGATGCTCCGTCGCCACTGTTTCTCCCTCTAAGGTCAACGACAGTGGT
JMSF025J21- GGTTGGAGAGTTCGATGCTCCGTCGCCACTGTTTCTCCCTCTAAGGTCAACGACAGTGGT
                      ____________________________________________________________
consensus GGTTGGAGAGTTCGATGCTCCGTCGCCACTGTTTCTCCCTCTAAGGTCAACGACAGTGGT
 
. : . : . : . : . : . :
JMSF022I21- AATCCTTTCCCGACGTTTGACTGCGTTATCGTTGGCGCAGGAATCAGCGGTCTCTGCACT
JMSF025J21- AATCCTTTCCCGACGTTTGACTGCGTTATCGTTGGCGCAGGAATCAGCGGTCTCTGCACT
                      ____________________________________________________________
consensus AATCCTTTCCCGACGTTTGACTGCGTTATCGTTGGCGCAGGAATCAGCGGTCTCTGCACT
 
. : . : . : . : . : . :
JMSF022I21- GCCCAAGCCCTCTCCACCAGCTACCCCAATTTGTTGGTGACCGAGGCCAGAGATCGAGTT
JMSF025J21- GCCCAAGCCCTCTCCACCAGCTACCCCAATTTGTTGGTGACCGAGGCCAGAGATCGAGTT
                      ____________________________________________________________
consensus GCCCAAGCCCTCTCCACCAGCTACCCCAATTTGTTGGTGACCGAGGCCAGAGATCGAGTT
 
. : . : . : . : . : . :
JMSF022I21- GGCGGTAACATCACGACTGTAGAGAGGGAAGGTTATCTCTGGGAAGAAGGTCCCAATAGC
JMSF025J21- GGCGGTAACATCACGACTGTAGAGAGGGAAGGTTATCTCTGGGAAGAAGGTCCCAATAGC
                      ____________________________________________________________
consensus GGCGGTAACATCACGACTGTAGAGAGGGAAGGTTATCTCTGGGAAGAAGGTCCCAATAGC
 
. : . : . : . : . : . :
JMSF022I21- TTCCAGCCTTCGGAGGCCGTGCTCAGGATGGTGGTTGATTGTGGATTGAAGGACGATTTG
JMSF025J21- TTCCAGCCTTCGGAGGCCGTGCTCAGGATGGTGGTTGATTGTGGATTGAAGGACGATTTG
                      ____________________________________________________________
consensus TTCCAGCCTTCGGAGGCCGTGCTCAGGATGGTGGTTGATTGTGGATTGAAGGACGATTTG
 
. : . : . : . : . : . :
JMSF022I21- GTGTTAGGGGACCCCAATGCACCGCGTTTCGTCTTCTGGAATGGCAAGCTCAGGCCGGTA
JMSF025J21- GTGTTAGGGGACCCCAATGCACCGCGTTTCGTCTTCTGGAATGGCAAGCTCAGGCCGGTA
JMSF028K05- CGGTA
                      ____________________________________________________________
consensus GTGTTAGGGGACCCCAATGCACCGCGTTTCGTCTTCTGGAATGGCAAGCTCAGGCCGGTA
 
. : . : . : . : . : . :
JMSF022I21- CCTTCCAAGCCCGCGGACCTGCCCTTCTTTGACTTGATGAGTTTTCCCGGGAAGCTCAGA
JMSF025J21- CCTTCCAAGCCCGCGGACCTGCCCTTCTTTGACTTGATGAGTTTTCCCGGGAAGCTCAGA
JMSF028K05- CCTTCCAAGCCCGCGGACCTGCCCTTCTTTGACTTGATGAGTTTTCCCGGGAAGCTCAGA
                      ____________________________________________________________
consensus CCTTCCAAGCCCGCGGACCTGCCCTTCTTTGACTTGATGAGTTTTCCCGGGAAGCTCAGA
 
. : . : . : . : . : . :
JMSF022I21- GCTGGTTTTGGAGCCATTGGTTTTC
JMSF025J21- GCTGGTTTTGGAGCCATTGGTTTTCGCCCACCGCCCCCA
JMSF028K05- GCTGGTTTTGGAGCCATTGGTTTTCGCCCACCGCCCCCAGGGCATGAGGAATCCGTGGAG
                      ____________________________________________________________
consensus GCTGGTTTTGGAGCCATTGGTTTTCGCCCACCGCCCCCAGGGCATGAGGAATCCGTGGAG
 
. : . : . : . : . : . :
JMSF028K05- GAGTTTGTGCGTCGTAACCTCGGAGAAGAAGTCTTTGAGCGCTTAATAGAGCCATTTTGC
                      ____________________________________________________________
consensus GAGTTTGTGCGTCGTAACCTCGGAGAAGAAGTCTTTGAGCGCTTAATAGAGCCATTTTGC
 
. : . : . : . : . : . :
JMSF028K05- TCTGGTGTATACGCTGGTGATCCATCAAAGCTGAGTATGAAAGCAGCATTTGGGAAAGTG
                      ____________________________________________________________
consensus TCTGGTGTATACGCTGGTGATCCATCAAAGCTGAGTATGAAAGCAGCATTTGGGAAAGTG
 
. : . : . : . : . : . :
JMSF028K05- TGGAAGCTGGAGGAAAATGGTGGCAGCATAATTGGTGGAACCATTAAAGCACTCAAAGAG
                      ____________________________________________________________
consensus TGGAAGCTGGAGGAAAATGGTGGCAGCATAATTGGTGGAACCATTAAAGCACTCAAAGAG
 
. : . : . : . : . : . :
JMSF028K05- AGATCTAAAATGCCCAAGGCTCCTCAAGATCCGCGTTTACCTAAACCGAAGGGTCAAACT
                      ____________________________________________________________
consensus AGATCTAAAATGCCCAAGGCTCCTCAAGATCCGCGTTTACCTAAACCGAAGGGTCAAACT
 
. : . : . : . : . : . :
JMSF028K05- GTAGGTTCTTTCAGGAAAGGCCTTGCAATGCTGCCCGATTCAATTTCTTCAAGGTTGGGA
                      ____________________________________________________________
consensus GTAGGTTCTTTCAGGAAAGGCCTTGCAATGCTGCCCGATTCAATTTCTTCAAGGTTGGGA
 
. : . : . : . : . : . :
JMSF028K05- AGTAAAGTAAAGCTCTCATGGAAGCTTTCCAGTATTATCAAAACAGAAAATGGTGGGTTT
rJMSF022I21+ CAGAAAATGGTGGGTTT
rJMSF025J21+ CAGAAAATGGTGGGTTT
                      ____________________________________________________________
consensus AGTAAAGTAAAGCTCTCATGGAAGCTTTCCAGTATTATCAAAACAGAAAATGGTGGGTTT
 
. : . : . : . : . : . :
JMSF028K05- AACTTGACATATGAGACGCCAGGAGGATTTGTAACTCTGCAAACAAGAAGTGTAGTAATG
rJMSF022I21+ AACCTGACATATGAGACGCCAGGAGGATTTGTAACTCTGCAAACAAGAAGTGTAGTAATG
rJMSF025J21+ AACCTGACATATGAGACGCCAGGAGGATTTGTAACTCTGCAAACAAGAAGTGTAGTAATG
                      ____________________________________________________________
consensus AACCTGACATATGAGACGCCAGGAGGATTTGTAACTCTGCAAACAAGAAGTGTAGTAATG
 
. : . : . : . : . : . :
JMSF028K05- ACTATTCCATCCTATGTGGCAAGTCCCATACTACGTCCTCTTTCGGATGCAGCAGCTGAT
rJMSF022I21+ ACTATTCCATCCTATGTGGCAAGTCCCATACTACGTCCTCTTTCGGATGCAGCAGCTGAT
rJMSF025J21+ ACTATTCCATCCTATGTGGCAAGTCCCATACTACGTCCTCTTTCGGATGCAGCAGCTGAT
                      ____________________________________________________________
consensus ACTATTCCATCCTATGTGGCAAGTCCCATACTACGTCCTCTTTCGGATGCAGCAGCTGAT
 
. : . : . : . : . : . :
JMSF028K05- GCACTTGCTAAGTTTTACTATCCACCTGTTGCTGCAGTCACCATTTCATATCC
rJMSF022I21+ GCACTTGCTAAGTTTTACTATCCACCTGTTGCTGCAGTCACCATTTCATATCCAGAAAAA
rJMSF025J21+ GCACTTGCTAAGTTTTACTATCCACCTGTTGCTGCAGTCACCATTTCATATCCAGAAAAA
rJMSF028K05+ CTGCAGTCACCATTTCATATCCAGAAAAA
                      ____________________________________________________________
consensus GCACTTGCTAAGTTTTACTATCCACCTGTTGCTGCAGTCACCATTTCATATCCAGAAAAA
 
. : . : . : . : . : . :
rJMSF022I21+ GCTATTAGAGATGAGTGCCTGATTGATGGTGAACTTAAAGGATTTGGCCAGTTGCATCCA
rJMSF025J21+ GCTATTAGAGATGAGTGCCTGATTGATGGTGAACTTAAAGGATTTGGCCAGTTGCATCCA
rJMSF028K05+ GCTATTAGAGATGAGTGCCTGATTGATGGTGAACTTAAAGGATTTGGCCAGTTGCATCCA
                      ____________________________________________________________
consensus GCTATTAGAGATGAGTGCCTGATTGATGGTGAACTTAAAGGATTTGGCCAGTTGCATCCA
 
. : . : . : . : . : . :
rJMSF022I21+ CGCTCCCAAGGAGTTGAAACTTTAGGAACTATATACAGCTCATCACTTTTCCCCAACCGT
rJMSF025J21+ CGCTCCCAAGGAGTTGAAACTTTAGGAACTATATACAGCTCATCACTTTTCCCCAACCGT
rJMSF028K05+ CGCTCCCAAGGAGTTGAAACTTTAGGAACTATATACAGCTCATCACTTTTCCCCAACCGT
                      ____________________________________________________________
consensus CGCTCCCAAGGAGTTGAAACTTTAGGAACTATATACAGCTCATCACTTTTCCCCAACCGT
 
. : . : . : . : . : . :
rJMSF022I21+ GCTCCACCTGGAAGGGTTCTTCTTCTGAACTATATCGGAGGAGC--AAAAAATACTAACA
rJMSF025J21+ GCTCCACCTGGAAGGGTTCTTCTTCTGAACTATATCGGAGGAGCAAAAAAAATACTAACA
rJMSF028K05+ GCTCCACCTGGAAGGGTTCTTCTTCTGAACTATATCGGAGGAGC-AAAAAAATACTAACA
                      ____________________________________________________________
consensus GCTCCACCTGGAAGGGTTCTTCTTCTGAACTATATCGGAGGAGC-AAAAAAATACTAACA
 
. : . : . : . : . : . :
rJMSF022I21+ TTTTGGCTAAGTCACACAACCAACTTGTGGAAACAGTTGATCGCGACATCAGAAAGATGC
rJMSF025J21+ TTTTGGCTAAGTCACACAACCAACTTGTGGAAACAGTTGATCGCGACATCAGAAAGATGC
rJMSF006D15+ AACAGTTGATCGCGACATCAGAAAGATGC
rJMSF028K05+ TTTTGGCTAAGTCACACAACCAACTTGTGGAAACAGTTGATCGCGACATCAGAAAGATGC
                      ____________________________________________________________
consensus TTTTGGCTAAGTCACACAACCAACTTGTGGAAACAGTTGATCGCGACATCAGAAAGATGC
 
. : . : . : . : . : . :
rJMSF022I21+ TTATCAAGTCTGATGCTCAAGATCCATTTGTTTTGGGTGTTCGAGTATGGCCGCAAGCTA
rJMSF025J21+ TTATCAAGTCTGATGCTCAAGATCCATTTGTTTTGGGTGTTCGAGTATGGCCGCAAGCTA
rJMSF006D15+ TTATCANGTCTGATGCTCAAGATCCATTTGTTTTGGGTGTTCGAGTATGGCCGCAAGCTA
rJMSF028K05+ TTATCAAGTCTGATGCTCAAGATCCATTTGTTTTGGGTGTTCGAGTATGGCCGCAAGCTA
                      ____________________________________________________________
consensus TTATCAAGTCTGATGCTCAAGATCCATTTGTTTTGGGTGTTCGAGTATGGCCGCAAGCTA
 
. : . : . : . : . : . :
rJMSF022I21+ TTCCACAGTTCTTAGTTGGTCATTTGGATACATTAAGTGCTGCAAAAACTGCAATAAGAG
rJMSF025J21+ TTCCACAGTTCTTAGTTGGTCATTTGGATACATTAAGTGCTGCAAAAACTGCAATAAGAG
rJMSF006D15+ TTCCACAGTTCTTAGTTGGTCATTNGGATACATTAAGTGNTGCAAAAACTGCAATAAGAG
rJMSF028K05+ TTCCACAGTTCTTAGTTGGTCATTTGGATACATTAAGTGCTGCAAAAACTGCAATAAGAG
                      ____________________________________________________________
consensus TTCCACAGTTCTTAGTTGGTCATTTGGATACATTAAGTGCTGCAAAAACTGCAATAAGAG
 
. : . : . : . : . : . :
rJMSF022I21+ ATGGTGGGCTTGAAGGTCTGTTTCTTGGGGGCAACTTTGTATCTGGTGTAGCTTTAGGAA
rJMSF025J21+ ATGGTGGGCTTGAAGGTCTGTTTCTTGGGGGCAACTTTGTATCTGGTGTAGCTTTAGGAA
rJMSF006D15+ ATGGTGGGCTTGAAGGTNTGTTTCTTGGGGGCAACTTTGTATCTGGTGTAGCTTTAGGAA
rJMSF028K05+ ATGGTGGGCTTGAAGGTCTGTTTCTTGGGGGCAACTTTGTATCTGGTGTAGCTTTAGGAA
                      ____________________________________________________________
consensus ATGGTGGGCTTGAAGGTCTGTTTCTTGGGGGCAACTTTGTATCTGGTGTAGCTTTAGGAA
 
. : . : . : . : . : . :
rJMSF022I21+ GATGTATAGAGGGTGCTTATGATGTTGCTGTTGATGTAACTGAATTTTTGTCCAAGTATG
rJMSF025J21+ GATGTATAGAGGGTGCTTATGATGTTGCTGTTGATGTAACTGAATTTTTGTCCAAGTATG
rJMSF006D15+ GATGTATAGAGGGTGCTTATGATGTTGCTGTTGATGTAACTGAATTTTTGTCCAAGTATG
rJMSF028K05+ GATGTATAGAGGGTGCTTATGATGTTGCTGTTGATGTAACTGAATTTTTGTCCAAGTATG
                      ____________________________________________________________
consensus GATGTATAGAGGGTGCTTATGATGTTGCTGTTGATGTAACTGAATTTTTGTCCAAGTATG
 
. : . : . : . : . : . :
rJMSF022I21+ TTCGCAAGTGAGAATGCCCTACGAGATTGCAGTTCCACGTGGTCCTTAGGGCTCCCTTTT
rJMSF025J21+ TTCGCAAGTGAGAATGCCCTACGAGATTGCAGTTCCACGTGGTCCTTAGGGCTCCCTTTT
rJMSF006D15+ TTCGCAAGTGAGAATGCCCTACGAGATTGCAGTTCCACGTGGTCCTTAGGGCTCCCTTTT
rJMSF028K05+ TTCGCAAGTGAGAATGCCCTACGAGATTGCAGTTCCACGTGGTCCTTAGGGCTCCCTTTT
                      ____________________________________________________________
consensus TTCGCAAGTGAGAATGCCCTACGAGATTGCAGTTCCACGTGGTCCTTAGGGCTCCCTTTT
 
. : . : . : . : . : . :
rJMSF022I21+ AAGAGGATCATGGTGCACGAAATGATT
rJMSF025J21+ AAGAGGATCATGGTGCACGAAATGATT
rJMSF006D15+ AAGAGGATCATGGTGCACGAAATGATTTAACATCGAAGATAATTTC
rJMSF028K05+ AAGAGGATCATGGTGCACGAAATGATTTAACATTGAAGATAATTTCAGTATCAAAACCTT
                      ____________________________________________________________
consensus AAGAGGATCATGGTGCACGAAATGATTTAACATTGAAGATAATTTCAGTATCAAAACCTT
 
. : . : . : . : . : . :
rJMSF028K05+ TCAGTTTATGGCAATATTTATTTGAAGTTTCCTTGTATTAGGATTCAGTACTAGCGGCCG
                      ____________________________________________________________
consensus TCAGTTTATGGCAATATTTATTTGAAGTTTCCTTGTATTAGGATTCAGTACTAGCGGCCG