Contig 002887:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012O21Sequence310000115 (9)716002887 (2)ref|XP_009782254.1|5e-54PREDICTED: protein EARLY FLOWERING 3-like isoform X2 [Nicotiana sylvestris]
JMSF028G17Sequence680000115 (9)emb|CAN79509.1|7e-31hypothetical protein VITISV_038336 [Vitis vinifera]694002887 (2)ref|XP_009629368.1|6e-53PREDICTED: protein EARLY FLOWERING 3-like isoform X2 [Nicotiana tomentosiformis

Alignment

This contig is upended


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rJMSF012O21+                                                               TCCTGCA
                      ____________________________________________________________
consensus                                                                  TCCTGCA
 
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rJMSF012O21+          TATGGACTCCCAACTTCTCAATATCACTATCAAGGAATGGGTGATCCGTTTGCCCCTCCT
rJMSF028G17+                                    CTATCAAGGAATGGGTGATCCGTTTGCCCCTCCT
                      ____________________________________________________________
consensus             TATGGACTCCCAACTTCTCAATATCACTATCAAGGAATGGGTGATCCGTTTGCCCCTCCT
 
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rJMSF012O21+          ATCGGTCATGGCTATTTCCATCCATATGGTATGCCGGTAATGAACTCTGCTGTCTCAACA
rJMSF028G17+          ATCGGTCATGGCTATTTCCCTCCATATGGTATGCCGGTAATGAACTCTGCTGTCTCAACA
                      ____________________________________________________________
consensus             ATCGGTCATGGCTATTTCCCTCCATATGGTATGCCGGTAATGAACTCTGCTGTCTCAACA
 
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rJMSF012O21+          TCAGCTGTTGAACAGATGAACTCATTTACTCGAACGGGTTCTCAAGCTCAGGTATCAGGT
rJMSF028G17+          TCAGCTGTTGAACAGATGAACTCATTTACTCGAACGGGTTCTCAAGCTCAGGTATCAGGT
                      ____________________________________________________________
consensus             TCAGCTGTTGAACAGATGAACTCATTTACTCGAACGGGTTCTCAAGCTCAGGTATCAGGT
 
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rJMSF012O21+          GGGGGGGTGAACTTAAATGTTCAACATCAGAACTCATGCAACATGCCAAGCCAGAAGAAT
rJMSF028G17+          GGGGGGGTGAACTTAAATGTTCAACATCAGAACTCATGCAACATGCCAAGCCAGAAGAAT
                      ____________________________________________________________
consensus             GGGGGGGTGAACTTAAATGTTCAACATCAGAACTCATGCAACATGCCAAGCCAGAAGAAT
 
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rJMSF012O21+          GGGGATGCTGATGTTTCCGACGCTCACAGATTGCATGCTTGTAAAGATAATGAGATACAA
rJMSF028G17+          GGGGATGCTGATGTTTCCGACGCTCACAGATTGCATGCTTGTAAAGATAATGAGATACAA
                      ____________________________________________________________
consensus             GGGGATGCTGATGTTTCCGACGCTCACAGATTGCATGCTTGTAAAGATAATGAGATACAA
 
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rJMSF012O21+          GCTAGCTGTGCTAGTAGTCCAAGTGTAAGAGCACCGGGCGTGACAGTAAGTGGTCCCATG
rJMSF028G17+          GCTAGCTGTGCTAGTAGTCCAAGTGTAAGAGCACCGGGCGTGACAGTAAGTGGTCCCATG
                      ____________________________________________________________
consensus             GCTAGCTGTGCTAGTAGTCCAAGTGTAAGAGCACCGGGCGTGACAGTAAGTGGTCCCATG
 
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rJMSF012O21+          GAAGGAAGAAGTGTGCTTCCTCTATTTCCCACATCCCCAGTTGTCAACATCGTCGATGCC
rJMSF028G17+          GAAGGAAGAAGTGTGCTTCCTCTATTTCCCACATCCCCAGTTGTCAACATCGTCGATGCC
                      ____________________________________________________________
consensus             GAAGGAAGAAGTGTGCTTCCTCTATTTCCCACATCCCCAGTTGTCAACATCGTCGATGCC
 
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rJMSF012O21+          AGTCAGCCTCCTGATACTGGTCACCCTGCTAGGGTAATACGAGTTGTACCTCATAATGCT
rJMSF028G17+          AGTCAGCCTCCTGATACTGGTCACCCTGCTAGGGTAATACGAGTTGTACCTCATAATGCT
                      ____________________________________________________________
consensus             AGTCAGCCTCCTGATACTGGTCACCCTGCTAGGGTAATACGAGTTGTACCTCATAATGCT
 
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rJMSF012O21+          AGATCTGCATCTGAATCAGCTGCTCGGATCTTTCAATCTATACAAAAGGAGAGGAAGCAA
rJMSF028G17+          AGATCTGCATCTGAATCAGCTGCTCGGATCTTTCAATCTATACAAAAGGAGAGGAAGCAA
                      ____________________________________________________________
consensus             AGATCTGCATCTGAATCAGCTGCTCGGATCTTTCAATCTATACAAAAGGAGAGGAAGCAA
 
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rJMSF012O21+          TGACTCTAGTGTAACACATAAATAGGTAAGCAGCTGGTGGTGGCGGCTTGGAGGAGTGTA
rJMSF028G17+          TGACTCTAGTGTAACACATAAATAGGTAAGCAGCTGGTGGTGGCGGCTTGGAGGAGTGTA
                      ____________________________________________________________
consensus             TGACTCTAGTGTAACACATAAATAGGTAAGCAGCTGGTGGTGGCGGCTTGGAGGAGTGTA
 
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rJMSF012O21+          CGTACTTGACCATTTGCCCATCCAGCAAATTGGTCAGTTGTCTTAAACATTTTGGCTGCT
rJMSF028G17+          CGTACTTGACCATTTGCCCATCCAGCAAATTGGTCAGTTGTCTTAAACATTTTGGCTGCT
                      ____________________________________________________________
consensus             CGTACTTGACCATTTGCCCATCCAGCAAATTGGTCAGTTGTCTTAAACATTTTGGCTGCT
 
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rJMSF012O21+          ATGTAGTAGTAACTGAATTTTGTGTAGCAGACCAGTCCTAATGTAATGC           
rJMSF028G17+          ATGTAGTAGTAACTGAATTTTGTGTAGCAGACCAGTCCTAATGTAATGCATGCATAGATT
                      ____________________________________________________________
consensus             ATGTAGTAGTAACTGAATTTTGTGTAGCAGACCAGTCCTAATGTAATGCATGCATAGATT