Contig 002880:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027N22Sequence547010741 (2)ref|XP_009623760.1|7e-05PREDICTED: putative mediator of RNA polymerase II transcription subunit 24 [Nic701002880 (2)gb|EYU18731.1|3e-77hypothetical protein MIMGU_mgv1a005173mg [Erythranthe guttata]
JMSF038I09Sequence653010741 (2)emb|CDP14115.1|5e-35unnamed protein product [Coffea canephora]885002880 (2)ref|XP_009799720.1|293PREDICTED: uncharacterized protein LOC104245758 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF038I09+ AGTCGGCCGCTTTC
                      ____________________________________________________________
consensus AGTCGGCCGCTTTC
 
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rJMSF038I09+ GACAGGGCGGTTGTGGAGGAGAGCGAGTCGTTCTTGAAACTCGTTCACGGCGCCGGCGAA
                      ____________________________________________________________
consensus GACAGGGCGGTTGTGGAGGAGAGCGAGTCGTTCTTGAAACTCGTTCACGGCGCCGGCGAA
 
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rJMSF038I09+ GATAGAAACTCCACCACGAGTTTCGACTCGGCCCAGTTCAAGATTTCGCGCAAGAAGGAG
                      ____________________________________________________________
consensus GATAGAAACTCCACCACGAGTTTCGACTCGGCCCAGTTCAAGATTTCGCGCAAGAAGGAG
 
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rJMSF038I09+ AGAGAAAGCGGGGAGCCAATCTGGGGACGGAAAAGAAGAAGCAATTCCAGCGAAGAAGAA
                      ____________________________________________________________
consensus AGAGAAAGCGGGGAGCCAATCTGGGGACGGAAAAGAAGAAGCAATTCCAGCGAAGAAGAA
 
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rJMSF038I09+ TTGGAAGGTGATTCTGAGTCGACTCGGTTGTCATACGGCTCGGTGGTGAGTTTCGACGTT
rJMSF027N22+ CGACTCGGTTGTCATACGGCTCGGTGGTGAGTTTCGACGTT
                      ____________________________________________________________
consensus TTGGAAGGTGATTCTGAGTCGACTCGGTTGTCATACGGCTCGGTGGTGAGTTTCGACGTT
 
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rJMSF038I09+ GACGAGCTTGACCCGGAGAATTCCTTGGCCGGGTTTCTCCACCACGTCCCAATGAGTTTA
rJMSF027N22+ GACGAGCTTGACCCGGAGAATTCCTTGGCCGGGTTTCTCCACCACGTCCCAATGAGTTTA
                      ____________________________________________________________
consensus GACGAGCTTGACCCGGAGAATTCCTTGGCCGGGTTTCTCCACCACGTCCCAATGAGTTTA
 
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rJMSF038I09+ AGGAGATGGGCTTGTTACCCTATGCTACTCGGCCGACTCAGAAGAAATTTCAAGCACTTA
rJMSF027N22+ AGGAGATGGGCTTGTTACCCTATGCTACTCGGCCGACTCAGAAGAAATTTCAAGCACTTA
                      ____________________________________________________________
consensus AGGAGATGGGCTTGTTACCCTATGCTACTCGGCCGACTCAGAAGAAATTTCAAGCACTTA
 
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rJMSF038I09+ ATCTTAGTGGACGCAAAAGAGCTTCTCCTTCTCGGCGACCCACTGAGTCGACTCAGGAGC
rJMSF027N22+ ATCTTAGTGGACGCAAAAGAGCTTCTCCTTCTCGGCGACCCACTGAGTCGACTCAGGAGC
                      ____________________________________________________________
consensus ATCTTAGTGGACGCAAAAGAGCTTCTCCTTCTCGGCGACCCACTGAGTCGACTCAGGAGC
 
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rJMSF038I09+ CGGACCCCCGAGTCAGTGCACTTATCAACCCTCACCCCGCCGGCGCACGGCCGGAAAACC
rJMSF027N22+ CGGACCCCCGAGTCAGTGCACTTATCAACCCTCACCCCGCCGGCGCACGGCCGGAAAACC
                      ____________________________________________________________
consensus CGGACCCCCGAGTCAGTGCACTTATCAACCCTCACCCCGCCGGCGCACGGCCGGAAAACC
 
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rJMSF038I09+ CACCAGAAACCCGTCAGCCCGGCAATCGTAATGGGCGGATCAAGAGGGGTCCGGAGATTA
rJMSF027N22+ CACCAGAAACCCGTCAGCCCGGCAATCGTAATGGGCGGATCAAGAGGGGTCCGGAGATTA
                      ____________________________________________________________
consensus CACCAGAAACCCGTCAGCCCGGCAATCGTAATGGGCGGATCAAGAGGGGTCCGGAGATTA
 
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rJMSF038I09+ TCAAACGCGGTGCTAACGGAGATCGTCCGGGCGGCAATGCAACACAAGAAGAAGAACTCG
rJMSF027N22+ TCAAACGCGGTGCTAACGGAGATCGTCCGGGCGGCAATGCAACACAAGAAGAAGAACTCG
                      ____________________________________________________________
consensus TCAAACGCGGTGCTAACGGAGATCGTCCGGGCGGCAATGCAACACAAGAAGAAGAACTCG
 
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rJMSF038I09+ GTCAACGAGTCGGGACTCCTAAACCAACTCGTGGGCAATGAGTTCGTACTGAAGAACATA
rJMSF027N22+ GTCAACGAGTCGGGACTCCTAAACCAACTCGTGGGCAATGAGTTCGTACTGAAGAACATA
                      ____________________________________________________________
consensus GTCAACGAGTCGGGACTCCTAAACCAACTCGTGGGCAATGAGTTCGTACTGAAGAACATA
 
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rJMSF038I09+ AATTTGATTGTGTCGGCCGAGTCGATACCGGAACTGAGTTCACTCACTGGGTTGAATTCA
rJMSF027N22+ AATTTGATTGTGTCGGCCGAGTCGATACCGGAACTGAGTTCACTCACTGGGTTGAATTCA
                      ____________________________________________________________
consensus AATTTGATTGTGTCGGCCGAGTCGATACCGGAACTGAGTTCACTCACTGGGTTGAATTCA
 
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rJMSF038I09+ AGAACAGGTTCTTCCTCATCCACATCAAATTTAGCACTGGTTAGGCGTGGCAGTAGTAAT
rJMSF027N22+ AGAACAGGTTCTTCCTCATCCACATCAAATTTAGCACTGGTTAGGCGTGGCAGTAGTAAT
                      ____________________________________________________________
consensus AGAACAGGTTCTTCCTCATCCACATCAAATTTAGCACTGGTTAGGCGTGGCAGTAGTAAT
 
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rJMSF038I09+ GGTGATGGGAGTTCTTCAATTTTGAAATATTTATGTTCATTTTCTTTAGATTCTGCTGTT
rJMSF027N22+ GGTGATGGGAGTTCTTCAATTTTGAAATATTTATGTTCATTTTCTTTAGATTCTGCTGTT
                      ____________________________________________________________
consensus GGTGATGGGAGTTCTTCAATTTTGAAATATTTATGTTCATTTTCTTTAGATTCTGCTGTT
 
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rJMSF038I09+ TATAGTGACTGTTAGTACAC
rJMSF027N22+ TATAGTGACTGTTAGTACACAAGGAATAATTACAGTTACCACACGCACATTATTAAAAAA
                      ____________________________________________________________
consensus TATAGTGACTGTTAGTACACAAGGAATAATTACAGTTACCACACGCACATTATTAAAAAA