Contig 002878:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024C13Sequence692007917 (4)ref|XP_009795620.1|3e-101PREDICTED: inner membrane protein PPF-1, chloroplastic [Nicotiana sylvestris] r738002878 (2)ref|XP_011042682.1|2e-64PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Populus euphratica
JMSF027I10Sequence609007917 (4)ref|XP_009795620.1|2e-69PREDICTED: inner membrane protein PPF-1, chloroplastic [Nicotiana sylvestris] r730002878 (2)ref|XP_011042682.1|2e-53PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Populus euphratica

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF024C13+ TGGATGGGCATCCACCTCTAGG
                      ____________________________________________________________
consensus TGGATGGGCATCCACCTCTAGG
 
. : . : . : . : . : . :
rJMSF024C13+ TTGGCAGGAAACTGCAGCTTACCTTGTATTACCTGTACTCTTGGTGGTCTCTCAGTTTGT
rJMSF027I10+ CTCAGTTTGT
                      ____________________________________________________________
consensus TTGGCAGGAAACTGCAGCTTACCTTGTATTACCTGTACTCTTGGTGGTCTCTCAGTTTGT
 
. : . : . : . : . : . :
rJMSF024C13+ TTCAATGGAGATAATGAAGCCTCCCGAAACAGATGATCCAAATCAAAAGAACACACTTCT
rJMSF027I10+ TTCAATGGAGATAATGAAGCCTCCCGAAGCAGATGATCCAAATCAAAAGAACACACTTCT
                      ____________________________________________________________
consensus TTCAATGGAGATAATGAAGCCTCCCGAAGCAGATGATCCAAATCAAAAGAACACACTTCT
 
. : . : . : . : . : . :
rJMSF024C13+ TGTCTTCAAGTTTCTTCCACTCATGATTGGTTACTTTTCTCTCTCTGTCCCATCTGGTTT
rJMSF027I10+ TGTCTTCAAGTTTCTTCCACTCATGATTGGTTACTTTTCTCTCTCTGTCCCATCTGGTTT
                      ____________________________________________________________
consensus TGTCTTCAAGTTTCTTCCACTCATGATTGGTTACTTTTCTCTCTCTGTCCCATCTGGTTT
 
. : . : . : . : . : . :
rJMSF024C13+ AACAATTTACTGGCTCACTAATAATGTGCTGAGCACCGCACAGCAGGTTTGGTTGCGCAA
rJMSF027I10+ AACAATTTACTGGCTCACTAATAATGTGCTGAGCACCGCACAGCAGGTTTGGTTGCGCAA
                      ____________________________________________________________
consensus AACAATTTACTGGCTCACTAATAATGTGCTGAGCACCGCACAGCAGGTTTGGTTGCGCAA
 
. : . : . : . : . : . :
rJMSF024C13+ ATTAGGTGGTGCAAAACCTGTTGTGACTGAAAATGCAAGTGGCATAATCAGTGCTGGGAA
rJMSF027I10+ ATTAGGTGGTGCAAAACCTGTTGTGACTGAAAATGCAAGTGGCATAATCAGTGCTGGGAA
                      ____________________________________________________________
consensus ATTAGGTGGTGCAAAACCTGTTGTGACTGAAAATGCAAGTGGCATAATCAGTGCTGGGAA
 
. : . : . : . : . : . :
rJMSF024C13+ AGCAAAAAGAACAGCTGTTCAACCATCGCAGACTGGGGATAGATTTAGGCAGTTGAAGGA
rJMSF027I10+ AGCAAAAAGAACAGCTGTTCAACCATCGCAGACTGGGGATAGATTTAGGCAGTTGAAGGA
                      ____________________________________________________________
consensus AGCAAAAAGAACAGCTGTTCAACCATCGCAGACTGGGGATAGATTTAGGCAGTTGAAGGA
 
. : . : . : . : . : . :
rJMSF024C13+ AGAAGAGAAGAAAAAGTCAAGTAAGGCACTATCTGCAGCGCAAGGACAGATATCAGCTTC
rJMSF027I10+ AGAAGAGAAGAAAAAGTCAAGTAAGGCACTATCTGCAGCGCAAGGACAGATATCAGCTTC
                      ____________________________________________________________
consensus AGAAGAGAAGAAAAAGTCAAGTAAGGCACTATCTGCAGCGCAAGGACAGATATCAGCTTC
 
. : . : . : . : . : . :
rJMSF024C13+ TGCATCTGATTCAGAGGATGAGTCAGAGGAAAGCGATTCAAAGGATGAGGAGGTTCTTGA
rJMSF027I10+ TGCATCTGATTCAGAGGATGAGTCAGAGGAAAGCGATTCAAAGGATGAGGAGGTTCTTGA
                      ____________________________________________________________
consensus TGCATCTGATTCAGAGGATGAGTCAGAGGAAAGCGATTCAAAGGATGAGGAGGTTCTTGA
 
. : . : . : . : . : . :
rJMSF024C13+ AGAGGCTTACACTTCTGGCAACAGTAAAAAAGTTCCAGACTACTCTGGGCCAAGGAGGAG
rJMSF027I10+ AGAGGCTTACACTTCTGGCAACAGTAAAAAAGTTCCAGACTACTCTGGGCCAAGGAGGAG
                      ____________________________________________________________
consensus AGAGGCTTACACTTCTGGCAACAGTAAAAAAGTTCCAGACTACTCTGGGCCAAGGAGGAG
 
. : . : . : . : . : . :
rJMSF024C13+ CAAACGATCAAAGAGAAAGCGTGCGGTATGAAAATGATATAGTCACTTTTTTTTTAACTC
rJMSF027I10+ CAAACGATCAAAGAGAAAGCGTGCGGTATGAAAATGATATAGTCACTTTTTTTTTAACTC
                      ____________________________________________________________
consensus CAAACGATCAAAGAGAAAGCGTGCGGTATGAAAATGATATAGTCACTTTTTTTTTAACTC
 
. : . : . : . : . : . :
rJMSF024C13+ AGATTTTTACTAGTATACTTGAACAGATTGTATCCTAGTTATAGCGGCCATTTTCACATC
rJMSF027I10+ AGATTTTTACTAGTATACTTGAACAGATTGTATCCTAGTTATAGCGGCCATTTTCACATC
                      ____________________________________________________________
consensus AGATTTTTACTAGTATACTTGAACAGATTGTATCCTAGTTATAGCGGCCATTTTCACATC
 
. : . : . : . : . : . :
rJMSF024C13+ GGTCATCTATTTGTGATATAGCTACCATTCATCGAACTCATCTGTCTGTAGGGCAT
rJMSF027I10+ GGTCATCTATTTGTGATATAGCTACCATTCATCGAACTCATCTGTCTGTAGGGCATATCC
                      ____________________________________________________________
consensus GGTCATCTATTTGTGATATAGCTACCATTCATCGAACTCATCTGTCTGTAGGGCATATCC
 
. : . : . : . : . : . :
rJMSF027I10+ TACATCCATCTCTTATTTAGTAGTATCTTTCTGCTCTTCAACAAAGATGAAAACGAAAGT
                      ____________________________________________________________
consensus TACATCCATCTCTTATTTAGTAGTATCTTTCTGCTCTTCAACAAAGATGAAAACGAAAGT