| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF023H24 | Sequence | 651 | 000784 (12) | emb|CBI30712.3| | 8e-83 | unnamed protein product [Vitis vinifera] | 649 | 002856 (3) | ref|XP_008349233.1| | 5e-51 | PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming]-like [Malus d |
| JMSF027F09 | Sequence | 673 | 000784 (12) | gb|AGE09572.1| | 2e-87 | cellulose synthase-like protein [Eucalyptus cladocalyx] | 649 | 002856 (3) | ref|XP_009766951.1| | 1e-73 | PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Nicotiana sy |
| JMSF037J11 | Sequence | 669 | 000784 (12) | dbj|BAM05565.1| | 2e-71 | cellulose synthase 1, partial [Eucalyptus pilularis] dbj|BAM05566.1| cellulose s | 625 | 002856 (3) | ref|XP_009591676.1| | 2e-65 | PREDICTED: LOW QUALITY PROTEIN: cellulose synthase A catalytic subunit 8 [UDP-f |
This contig is upended
. : . : . : . : . : . :
rJMSF037J11+ GTCTTCCAAGGAATCCTCAAAATGATAGCGGGGATAG
rJMSF027F09+ GTCTTCCAAGGAATCCTCAAAATGATNGCGGGGATAG
____________________________________________________________
consensus GTCTTCCAAGGAATCCTCAAAATGATAGCGGGGATAG
. : . : . : . : . : . :
rJMSF037J11+ ACACCANCNTCACCGTCACGGCGAAAGCGGCAGACGACGGAGAGTTCGGGGAGCTCTACC
rJMSF027F09+ ACACCAACTTCACNGTCACGGCGAAAGCGGCAGACGACGGAGAGTTCGGGGAGCTCTACC
rJMSF023H24+ GTCACGGCGAAAGCGGCAGACGACGGAGAGTTCGGGGAGCTCTACC
____________________________________________________________
consensus ACACCAACTTCACCGTCACGGCGAAAGCGGCAGACGACGGAGAGTTCGGGGAGCTCTACC
. : . : . : . : . : . :
rJMSF037J11+ TCTTCAAGTGGANCACAGTCCTAATCCCTCCGACCACCATTCTCATCGTCAANTTGGTCG
rJMSF027F09+ TNTTCAAGTGGANCACAGTCCTAATCCCTCCGACCACCATTCTCATNGTCAACTTGGTCG
rJMSF023H24+ TCTTCAAGTGGACCACAGTCCTAATCCCTCCGACCACCNTTTTCATNGTCAACTTGGTCG
____________________________________________________________
consensus TCTTCAAGTGGACCACAGTCCTAATCCCTCCGACCACCATTCTCATCGTCAACTTGGTCG
. : . : . : . : . : . :
rJMSF037J11+ GAGTTATCGCCGGCTTCTCCGACGCCCTCAACAGCGGCTACGAGTCCTGGGGGCCATNGT
rJMSF027F09+ GAGTTATCNCCGGCTTCTCCGACGCCCTCAACAGCGGCTACGAGTCCTGGGGGCCATTGT
rJMSF023H24+ GAGTTATCGCCGGNTTTTNCGACGCCCTCAACAGCGGNTACGAGTCCTGGGGGCCNTTGT
____________________________________________________________
consensus GAGTTATCGCCGGCTTCTCCGACGCCCTCAACAGCGGCTACGAGTCCTGGGGGCCATTGT
. : . : . : . : . : . :
rJMSF037J11+ TCGGCAAAGTTTTNTTCTCGTTATGGGTCATNTTCCATCTCTACCCATTCTTGAAAGGTC
rJMSF027F09+ TCGGCAAAGTTNTNTTCTCGTTATGGGTCATNTTCCATCTCTACCCATTCTTGAAAGGTN
rJMSF023H24+ TNGGCAAAGTTTTNTTCTCGTTATGGGTCATNTTCCATCTCTACCCNTTCTTGAAAGGTN
____________________________________________________________
consensus TCGGCAAAGTTTTNTTCTCGTTATGGGTCATNTTCCATCTCTACCCATTCTTGAAAGGTC
. : . : . : . : . : . :
rJMSF037J11+ TCATGGGTCGCCAGAATCGCACCCCCACCATTGTTGTGCTTTGGTCGGTGCTGTTGGCGT
rJMSF027F09+ TCATGGGTCGCCAGAATCGCACCCCCACCATTGTTGTGCTTTGGTCGGTGCTGTTGGCGT
rJMSF023H24+ TCATGGGTCGCCAGAATCGCACCCCCNCCNTTGTTGTGCTTTGGTCGGTGCTGTTGGNGT
____________________________________________________________
consensus TCATGGGTCGCCAGAATCGCACCCCCACCATTGTTGTGCTTTGGTCGGTGCTGTTGGCGT
. : . : . : . : . : . :
rJMSF037J11+ CGGTTTTCTCGCTCATCTGGGTCAAGATCAATCCGTNNGTTGCCAAGAATGACCNTTCAA
rJMSF027F09+ CGGTTTTCTCGCTCATCTGGGTCAAGATCAATCCGNTTGTTGCCAAGAATGACCCTTCAA
rJMSF023H24+ CGGTTTTCTCGCTCATNTGGGTCAAGATCAATCCGTTTGTTGCCAAGAANGACCCTTCAA
____________________________________________________________
consensus CGGTTTTCTCGCTCATCTGGGTCAAGATCAATCCGTTTGTTGCCAAGAATGACCCTTCAA
. : . : . : . : . : . :
rJMSF037J11+ CCTTGGCTCAGAACTGCATTTCCATTGACCGTAGTTGAGNTTAGCTTCCATGCATGGCCN
rJMSF027F09+ CCTTGGCTCAGAACTGCATTTCCATTGACCGTAGTTGAGNTTAGCTTCCANGCATGGCCG
rJMSF023H24+ CCTTGGCTCAGAACTGCATTTCCNTTGACTGTAGTTGAGCTTAGCTTCCNTGCATGGCCG
____________________________________________________________
consensus CCTTGGCTCAGAACTGCATTTCCATTGACCGTAGTTGAGCTTAGCTTCCATGCATGGCCG
. : . : . : . : . : . :
rJMSF037J11+ CTGCAGAAGAAGAAGAAGTTATATATATCATGGTTNNGTGCTGGGACGACAGCCTTAATN
rJMSF027F09+ NTGCAGAAGAAGAAGAAGTTATATATATCATGGTTNNGTGCTGGGACGACAGCCTTAATN
rJMSF023H24+ CTGCAGAAGAAGAAGAAGTTATATATATCATGGTTTTGTGCTGGGACGACAGCCTTAATT
____________________________________________________________
consensus CTGCAGAAGAAGAAGAAGTTATATATATCATGGTTTTGTGCTGGGACGACAGCCTTAATT
. : . : . : . : . : . :
rJMSF037J11+ AGATNTTCANGCTCNGCTCTCAATTTTTATACTTGCTGTTTTTGTGTTTGATTAGCATAA
rJMSF027F09+ AGATNTTCATGCTCNGCTCTCAATTTTTATACTTGCTGTTTTTGNGTTTGATTAGCATAA
rJMSF023H24+ AGATCTTCATGCTNTGCTCTCAANTTTTNTACNTGCTGNTTTTGNGTTTGATTAGCATAA
____________________________________________________________
consensus AGATCTTCATGCTCTGCTCTCAATTTTTATACTTGCTGTTTTTGTGTTTGATTAGCATAA
. : . : . : . : . : . :
rJMSF037J11+ AACCACCAAGAATCGTGNTGACAATGCAAATGTNTNNTATTTGCTTTT
rJMSF027F09+ AACCACCAAGAATCGTGNTGACAATGCAAATGTNTANTATTTGCTTTTGAGTTTGATGGA
rJMSF023H24+ AACCCCCNAGAATTGTGTTGACAANGCAAATGTTTNTTATTTGCTTTTGAGTTTGATGGA
____________________________________________________________
consensus AACCACCAAGAATCGTGTTGACAATGCAAATGTTTATTATTTGCTTTTGAGTTTGATGGA
. : . : . : . : . : . :
rJMSF027F09+ ATTTAATGT
rJMSF023H24+ ATTTAATGTACAAAATACAAAGGGAAATGAGAAAATTTGTAAAAAAGAAAAAAAAAAATA
____________________________________________________________
consensus ATTTAATGTACAAAATACAAAGGGAAATGAGAAAATTTGTAAAAAAGAAAAAAAAAAATA