Contig 002853:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039C16Sequence480010794 (5)718002853 (5)ref|XP_010323795.1|4e-19PREDICTED: mediator-associated protein 1-like isoform X3 [Solanum lycopersicum]
JMFF042D08Sequence652010794 (5)ref|XP_006449140.1|6e-08hypothetical protein CICLE_v10015528mg [Citrus clementina] gb|ESR62380.1| hypoth616002853 (5)ref|XP_009624518.1|3e-14PREDICTED: mediator-associated protein 1-like [Nicotiana tomentosiformis]
JMSF022N14Sequence674010794 (5)ref|XP_010109556.1|4e-12hypothetical protein L484_018291 [Morus notabilis] gb|EXC23160.1| hypothetical p793002853 (5)ref|XP_010323795.1|2e-16PREDICTED: mediator-associated protein 1-like isoform X3 [Solanum lycopersicum]
JMSF034H03Sequence625010794 (5)723002853 (5)ref|XP_010323795.1|5e-20PREDICTED: mediator-associated protein 1-like isoform X3 [Solanum lycopersicum]
JMSF048I09Sequence708010794 (5)ref|XP_010109556.1|2e-15hypothetical protein L484_018291 [Morus notabilis] gb|EXC23160.1| hypothetical p761002853 (5)ref|XP_010323795.1|2e-16PREDICTED: mediator-associated protein 1-like isoform X3 [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF022N14+ AGAGGGGATACCC
                      ____________________________________________________________
consensus AGAGGGGATACCC
 
. : . : . : . : . : . :
rJMSF048I09+ TCATGATTACAAGACTTTGAGGTCTCAAAAAAGGTTTGGGGCAGTA
rJMSF034H03+ AGTA
rJMFF039C16+ AGTA
rJMSF022N14+ NGATTCCATAAGCCTCATGATTACAAGACTTTGAGGTCTCAAAAAAGGTTTGGGGCAGTA
                      ____________________________________________________________
consensus NGATTCCATAAGCCTCATGATTACAAGACTTTGAGGTCTCAAAAAAGGTTTGGGGCAGTA
 
. : . : . : . : . : . :
rJMSF048I09+ GTGGAGTTAGCAATGGTGTAAATGAGAACACGAAAAGCTCTAATGTGAAAGCGAAGAGGG
rJMSF034H03+ GTGGAGTTAGCAATGGTGTAAATGAGAACACGAAAAGCTCTAATGTGAAAGCGAAGAGGG
rJMFF039C16+ GTGGAGTTAGCAATGGTGTAAATGAGAACACGAAAAGCTCTAATGTGAAAGCGAAGAGGG
rJMSF022N14+ GTGGAGTTAGCAATGGTGTAAATGAGAACACGAAAAGCTCTAATGTGAAAGCGAAGAGGG
                      ____________________________________________________________
consensus GTGGAGTTAGCAATGGTGTAAATGAGAACACGAAAAGCTCTAATGTGAAAGCGAAGAGGG
 
. : . : . : . : . : . :
rJMSF048I09+ CTGCTGAAATTAAGAAGATTAGTGAGCCAAAGAAGGGTGCTAAAGTTGGTGTAACCAAGG
rJMSF034H03+ CTGCTGAAATTAAGAAGATTAGTGAGCCAAAGAAGGGTGCTAAAGTTGGTGTAACCAAGG
rJMFF042D08+ TGCTGAAATTAAGAAGATTAGTGAGCCAAAGAAGGGTGCTAAAGTTGGTGTAACCAAGG
rJMFF039C16+ CTGCTGAAATTAAGAAGATTAGTGAGCCAAAGAAGGGTGCTAAAGTTGGTGTAACCAAGG
rJMSF022N14+ CTGCTGAAATTAAGAAGATTAGTGAGCCAAAGAAGGGTGCTAAAGTTGGTGTAACCAAGG
                      ____________________________________________________________
consensus CTGCTGAAATTAAGAAGATTAGTGAGCCAAAGAAGGGTGCTAAAGTTGGTGTAACCAAGG
 
. : . : . : . : . : . :
rJMSF048I09+ AAGAGCCAAAGAAGGTTGCTAAAGTTAGTGACTTTGATGTAACCAAGGAAGAAGAAAAGG
rJMSF034H03+ AAGAGCCAAAGAAGGTTGCTAAAGTTAGTGACTTTGATGTAACCAAGGAAGAAGAAAAGG
rJMFF042D08+ AAGAGCCAAAGAAGGTTGCTAAAGTTAGTGACTTTGATGTAACCAAGGAAGAAGAAAAGG
rJMFF039C16+ AAGAGCCAAAGAAGGTTGCTAAAGTTAGTGACTTTGATGTAACCAAGGAAGAAGAAAAGG
rJMSF022N14+ AAGAGCCAAAGAAGGTTGCTAAAGTTAGTGACTTTGATGTAACCAAGGAAGAAGAAAAGG
                      ____________________________________________________________
consensus AAGAGCCAAAGAAGGTTGCTAAAGTTAGTGACTTTGATGTAACCAAGGAAGAAGAAAAGG
 
. : . : . : . : . : . :
rJMSF048I09+ AGAAACCGAATGTTACCAAAGACAAGGATACTGGGATTTCTTTGAAAGATGAAGGGGATT
rJMSF034H03+ AGAAACCGAATGTTACCAAAGACAAGGATACTGGGATTTCTTTGAAAGATGAAGGGGATT
rJMFF042D08+ AGAAACCGAATGTTACCAAAGACAAGGATACTGGGATTTCTTTGAAAGATGAAGGGGATT
rJMFF039C16+ AGAAACCGAATGTTACCAAAGACAAGGATACTGGGATTTCTTTGAAAGATGAAGGGGATT
rJMSF022N14+ AGAAACCGAATGTTACCAAAGACAAGGATACTGGGATTTCTTTGAAAGATGAAGGGGATT
                      ____________________________________________________________
consensus AGAAACCGAATGTTACCAAAGACAAGGATACTGGGATTTCTTTGAAAGATGAAGGGGATT
 
. : . : . : . : . : . :
rJMSF048I09+ TCAAATCTAAGTATCCACGCCTAGTTCAATCCTTCAATAAAGCAAATATGCCTAAGTTAT
rJMSF034H03+ TCAAATCTAAGTATCCACGCCTAGTTCAATCCTTCAATAAAGCAAATATGCCTAAGTTAT
rJMFF042D08+ TCAAATCTAAGTATCCACGCCTAGTTCAATCCTTCAATAAAGCAAATATGCCTAAGTTAT
rJMFF039C16+ TCAAATCTAAGTATCCACGCCTAGTTCAATCCTTCAATAAAGCAAATATGCCTAAGTTAT
rJMSF022N14+ TCAAATCTAAGTATCCACGCCTAGTTCAATCCTTCAATAAAGCAAATATGCCTAAGTTAT
                      ____________________________________________________________
consensus TCAAATCTAAGTATCCACGCCTAGTTCAATCCTTCAATAAAGCAAATATGCCTAAGTTAT
 
. : . : . : . : . : . :
rJMSF048I09+ CAGAAGAGGCACTTGCAATTATTCAGGAAAATTTGAGTTTGATAGGGAGTTCCAAAGCAG
rJMSF034H03+ CAGAAGAGGCACTTGCAATTATTCAGGAAAATTTGAGTTTGATAGGGAGTTCCAAAGCAG
rJMFF042D08+ CAGAAGAGGCACTTGCAATTATTCAGGAAAATTTGAGTTTGATAGGGAGTTCCAAAGCAG
rJMFF039C16+ CAGAAGAGGCACTTGCAATTATTCAGGAAAATTTGAGTTTGATAGGGAGTTCCAAAGCAG
rJMSF022N14+ CAGAAGAGGCACTTGCAATTATTCAGGAAAATTTGAGTTTGATAGGGAGTTCCAAAGCAG
                      ____________________________________________________________
consensus CAGAAGAGGCACTTGCAATTATTCAGGAAAATTTGAGTTTGATAGGGAGTTCCAAAGCAG
 
. : . : . : . : . : . :
rJMSF048I09+ AAGAGTTTGAGGAGCAGTGGACCAAAATACTGAAGGAAGAGGCTGAACTATTCTTGAAGA
rJMSF034H03+ AAGAGTTTGAGGAGCAGTGGACCAAAATACTGAAGGAAGAGGCTGAACTATTCTTGAAGA
rJMFF042D08+ AAGAGTTTGAGGAGCAGTGGACCAAAATACTGAAGGAAGAGGCTGAACTATTCTTGAAGA
rJMFF039C16+ AAGAGTTTGAGGAGCAGTGGACCAAAATACTGAAGGAAGAGGCTGAACTATTCTTGAAGA
rJMSF022N14+ AAGAGTTTGAGGAGCAGTGGACCAAAATACTGAAGGAAGAGGCTGAACTATTCTTGAAGA
                      ____________________________________________________________
consensus AAGAGTTTGAGGAGCAGTGGACCAAAATACTGAAGGAAGAGGCTGAACTATTCTTGAAGA
 
. : . : . : . : . : . :
rJMSF048I09+ TGACAGATTTGATGGGGGAACAGATCAAATTGATCGTCGAGACTATAAAGAGGTAAATGC
rJMSF034H03+ TGACAGATTTGATGGGGGAACAGATCAAATTGATCGTCGAGACTATAAAGAGGTAAATGC
rJMFF042D08+ TGACAGATTTGATGGGGGAACAGATCAAATTGATCGTCGAGACTATAAAGAGGTAAATGC
rJMFF039C16+ TGACAGATTTGATGGGGGAACAGATCAAATTGATCGTCGAGACTATAAAGAGGTAAATGC
rJMSF022N14+ TGACAGATTTGATGGGGGAACAGATCAAATTGATCGTCGAGACTATAAAGAGGTAAATGC
                      ____________________________________________________________
consensus TGACAGATTTGATGGGGGAACAGATCAAATTGATCGTCGAGACTATAAAGAGGTAAATGC
 
. : . : . : . : . : . :
rJMSF048I09+ TGAAGCTGAAGCTTTATGTATTATGGCTAGCTATATAGATGTTTCTGCAGGGTGAATTTT
rJMSF034H03+ TGAAGCTGAAGCTTTATGTATTATGGCTAGCTATATAGATGTTTCTGCAGGGTGAATTTT
rJMFF042D08+ TGAAGCTGAAGCTTTATGTATTATGGCTAGCTATATAGATGTTTCTGCAGGGTGAATTTT
rJMFF039C16+ TGAAGCTGAAGCTTTATGTATTATGGCTAGCTATATAGATGTTTCTGCAGGGTGAATTTT
rJMSF022N14+ TGAAGCTGAAGCTTTATGTATTATGGCTAGCTATATAGATGTTTCTGCAGGGTGAATTTT
                      ____________________________________________________________
consensus TGAAGCTGAAGCTTTATGTATTATGGCTAGCTATATAGATGTTTCTGCAGGGTGAATTTT
 
. : . : . : . : . : . :
rJMSF048I09+ GAGCTTTAGATATTTTGATTTAGTTCTCTGCTCTAGAAACACAAACCTGTTTTGTTGATG
rJMSF034H03+ GAGCTTTAGATATTTTGATTTAGTTCTCTGCTCTAGAAACACAAACCTGTTTTGTTGATG
rJMFF042D08+ GAGCTTTAGATATTTTGATTTAGTTCTCTGCTCTAGAAACACAAACCTGTTTTGTTGATG
rJMFF039C16+ GAGCTTTAGATATTTTGATTTAGTTCTCTGCTCTAGAAACACAAACCTGTTTTGTTGATG
rJMSF022N14+ GAGCTTTAGATATTTTGATTTAGTTCTCTGCTCTAGAAACACAAACCTGTTTTGTTGATG
                      ____________________________________________________________
consensus GAGCTTTAGATATTTTGATTTAGTTCTCTGCTCTAGAAACACAAACCTGTTTTGTTGATG
 
. : . : . : . : . : . :
rJMSF048I09+ ATGATTAGTGTCATAGGGCGGATTGTGTTTTGTTGTAAGCTTTTTGCTTTAGAAGTCCAC
rJMSF034H03+ ATGATTAGTGTCATAGGGCGGATTGTGTTTTGTTGTAAGCTTTTTGCTTTAGAAGTCCAC
rJMFF042D08+ ATGATTAGTGTCATAGGGCGGATTGTGTTTTGTTGTAAGCTTTTTGCTTTAGAAGTCCAC
rJMFF039C16+ ATGATTAGTGTCATAGGGCGGATTGTGTTTTGTTGTAAGCTTTTTGCTTTAGAAGTCCAC
rJMSF022N14+ ATGATTAGTGTCATAGGGCGGATTGTGTTTTGTTGTAAGCTTTTTGCTTTAGAAGTCCAC
                      ____________________________________________________________
consensus ATGATTAGTGTCATAGGGCGGATTGTGTTTTGTTGTAAGCTTTTTGCTTTAGAAGTCCAC
 
. : . : . : . : . : . :
rJMSF048I09+ TTTTACATTTTCCTTTCTATTTCCATATTCATATGCTAATTATATTCT
rJMSF034H03+ TTTTACATTTTCCTTTCTATTTCCATATTCATATGCTAATTATATTCT
rJMFF042D08+ TTTTACATTTTCCTT
rJMFF039C16+ TTTTACATTTTCCTTTCTATTTCCATATTCATATGCTAATTATATTCT
rJMSF022N14+ TTTTACATTTTCCTTTCTATTTCCATATTCATATGCTAATTATATTCTTGAAAACTTTAT
                      ____________________________________________________________
consensus TTTTACATTTTCCTTTCTATTTCCATATTCATATGCTAATTATATTCTTGAAAACTTTAT