Contig 002852:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016L14Sequence580002852 (12)ref|XP_003518726.1|2e-57PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos540002852 (12)ref|XP_003518726.1|1e-57PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos
JMFF020J05Sequence525002852 (12)ref|XP_003518726.1|1e-57PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos547002852 (12)ref|XP_003518726.1|1e-57PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos
JMSF007B10Sequence238002852 (12)ref|XP_004138165.1|5e-35PREDICTED: 60S ribosomal protein L34-like [Cucumis sativus] ref|XP_004147322.1| 542002852 (12)ref|XP_003518726.1|8e-58PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos
JMSF022M17Sequence612002852 (12)ref|XP_003518726.1|2e-57PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos570002852 (12)ref|XP_003518726.1|1e-57PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos
JMSF023M17Sequence621018917ref|XP_004245542.1|1e-09PREDICTED: ethylene-responsive transcription factor CRF1 [Solanum lycopersicum]306002852 (12)ref|XP_010693235.1|6e-12PREDICTED: 60S ribosomal protein L34 [Beta vulgaris subsp. vulgaris]
JMSF030M07Sequence608002852 (12)ref|XP_003518726.1|3e-57PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos563002852 (12)ref|XP_003518726.1|2e-57PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos
JMSF031M07Sequence556002852 (12)ref|XP_003518726.1|2e-57PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF030M07+ GGGAGAAGAAACAAAGAAACAAACCTA
rJMSF031M07+ GGGAGAAGAAACAAAGAAACAAACCTA
rJMFF020J05+ AAGAAACAAAGAAACAAACCTA
rJMSF007B10+ GCTTTGGGAGAAGAAACAAAGAAACAAACCTA
JMFF020J05- AAGAAACAAAGAAACAAACCTA
JMSF022M17- GCTTTGGGAGAAGAAACAAAGAAACAAACCTA
JMSF030M07- GGGAGAAGAAACAAAGAAACAAACCTA
JMFF016L14- AAAGAAACAAACCTA
JMSF007B10- GCTTTGGGAGAAGAAACAAAGAAACAAACCTA
rJMSF022M17+ GCTTTGGGAGAAGAAACAAAGAAACAAACCTA
                      ____________________________________________________________
consensus GCTTTGGGAGAAGAAACAAAGAAACAAACCTA
 
. : . : . : . : . : . :
rJMSF030M07+ ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
rJMSF031M07+ ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
rJMFF020J05+ ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
rJMSF007B10+ ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
JMFF020J05- ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
rJMFF016L14+ CCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
JMSF022M17- ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
JMSF030M07- ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
JMFF016L14- ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
JMSF007B10- ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
rJMSF022M17+ ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
                      ____________________________________________________________
consensus ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
 
. : . : . : . : . : . :
rJMSF030M07+ ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
rJMSF031M07+ ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
rJMFF020J05+ ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
rJMSF007B10+ ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
JMFF020J05- ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
rJMFF016L14+ ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
JMSF022M17- ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
JMSF030M07- ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
JMFF016L14- ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
JMSF007B10- ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
rJMSF022M17+ ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
                      ____________________________________________________________
consensus ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
 
. : . : . : . : . : . :
rJMSF030M07+ AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
rJMSF031M07+ AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
rJMFF020J05+ AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
rJMSF007B10+ AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
JMFF020J05- AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
rJMFF016L14+ AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
JMSF022M17- AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
JMSF030M07- AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
JMFF016L14- AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
JMSF007B10- AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCNAG
rJMSF022M17+ AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
                      ____________________________________________________________
consensus AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
 
. : . : . : . : . : . :
rJMSF030M07+ GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
rJMSF031M07+ GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
rJMFF020J05+ GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
rJMSF007B10+ GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
JMFF020J05- GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
rJMSF023M17+ TGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGN
rJMFF016L14+ GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
JMSF022M17- GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
JMSF030M07- GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
JMFF016L14- GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
JMSF007B10- GGATTCCTCACTTGAGACCCGCTGAA
rJMSF022M17+ GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
                      ____________________________________________________________
consensus GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
 
. : . : . : . : . : . :
rJMSF030M07+ CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
rJMSF031M07+ CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
rJMFF020J05+ CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
rJMSF007B10+ CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
JMFF020J05- CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
rJMSF023M17+ CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCNGTCAGGGAAAGGATCATCA
rJMFF016L14+ CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
JMSF022M17- CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
JMSF030M07- CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
JMFF016L14- CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
rJMSF022M17+ CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
                      ____________________________________________________________
consensus CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
 
. : . : . : . : . : . :
rJMSF030M07+ GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
rJMSF031M07+ GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
rJMFF020J05+ GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
rJMSF007B10+ GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
JMFF020J05- GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
rJMSF023M17+ GAGCCTTTTTGGTGGAAGAGCNAAAGATTGTGAAGAAAGTTTTGAAGATTCNGAAGGCCA
rJMFF016L14+ GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
JMSF022M17- GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
JMSF030M07- GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
JMFF016L14- GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
rJMSF022M17+ GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
                      ____________________________________________________________
consensus GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
 
. : . : . : . : . : . :
rJMSF030M07+ AGGAAAAGCAAGCTTCTAAAGCCTAAG--TTGTGTGTTTTGTGTTGTGCAAGACATGACT
rJMSF031M07+ AGGAAAAGCAAGCTTCTAAAGCCTAAG--TTGTGTGTTTTGTGTTGTGCAAGACATGACT
rJMFF020J05+ AGGAAAAGCAAGCTTCTAAAGCCTAAG--TTGTGTGTTTTGTGTTGTGCAAGACATGACT
rJMSF007B10+ AGGAAAAGCAAGCTTCTAAAGCCTAAG--TTGTGTGTTTTGTGTTGTGCAAGACATGACT
JMFF020J05- AGGAAAAGCAAGCTTCTAAAGCCTAAG--TTGTGTGTTTTGTGTTGTGCAAGACATGACT
rJMSF023M17+ NGGAAAAGCANGCTTCTAAAGCTCTAATCTTGTGTGNTTTGTGTTGTGCNAGNCATGACT
rJMFF016L14+ AGGAAAAGCAAGCTTCTAAAGCCTAAG--TTGTGTGTTTTGTGTTGTGCAAGACATGACT
JMSF022M17- AGGAAAAGCAAGCT
JMSF030M07- AGGAAAAGCAAGCT
JMFF016L14- AGGAAAAGCAAGCT
rJMSF022M17+ AGGAAAAGCAAGCTTCTAAAGCCTAAG--TTGTGTGTTTTGTGTTGTGCAAGACATGACT
                      ____________________________________________________________
consensus AGGAAAAGCAAGCTTCTAAAGCCTAAG--TTGTGTGTTTTGTGTTGTGCAAGACATGACT
 
. : . : . : . : . : . :
rJMSF030M07+ TGCTGGTTTTAGAGACAAACCTATTTTTGGATACATCTTAGCATTGAGGATTCTTGAATG
rJMSF031M07+ TGCTGGTTTTAGAGACAAACCTATTTTTGGATACATCTTAGCATTGAGGATTCTTGAATG
rJMFF020J05+ TGCTGGTTTTAGAGACAAACCTATTTTTGGATACATCTTAGCATTGAGGATTCTTGAATG
rJMSF007B10+ TGCTGGTTTTAGAGACAAACCTATTTTTGGATACATCTTAGCATTGAGGATTCTTGAATG
JMFF020J05- TGCTGGTTTTAGAGACAAACCTATTTTTGGATACATCTTAGCATTGAGGATTCTTGAATG
rJMSF023M17+ TGCTGGTTTTAGAGACCAACCTATTTTTGGATACATNTTANCNTTGAGGATTCTTGAATG
rJMFF016L14+ TGCTGGTTTTAGAGACAAACCTATTTTTGGATACATCTTAGCATTGAGGATTCTTGAATG
rJMSF022M17+ TGCTGGTTTTAGAGACAAACCTATTTTTGGATACATCTTAGCATTGAGGATTCTTGAATG
                      ____________________________________________________________
consensus TGCTGGTTTTAGAGACAAACCTATTTTTGGATACATCTTAGCATTGAGGATTCTTGAATG
 
. : . : . : . : . : . :
rJMSF030M07+ TGTATTTTCATGTTTTTTGGGATACTCAGATTTGTATTTTTCTTTATGTTTTGT
rJMSF031M07+ TGTATTTTCATGTTTTTTGGGATACTCAGATTTGTATTTTTCTTTATGTT
rJMFF020J05+ TGTATTTTCATGTTTTTTGGGATACTCAGATTTGTATTTTTCTTTA
rJMSF007B10+ TGTATTTTCATGTTTTTTGGGATACTCAGATT
JMFF020J05- TGTATTTTCATGTTTTTTGGGATAC
rJMSF023M17+ TGTATTTCCATGTTTTTTGGGATA
rJMFF016L14+ TGTATTTTCATGTTTTTTGGGATACTCAGATTTGTATTTTTCTTTA
rJMSF022M17+ TGTATTTTCATGTTTTTTGGGATACTCAGATTTGTATTTTTCTTTATGTTTTGTGAATGT
                      ____________________________________________________________
consensus TGTATTTTCATGTTTTTTGGGATACTCAGATTTGTATTTTTCTTTATGTTTTGTGAATGT