Contig 002843:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008H18Sequence592008785 (7)ref|XP_009609674.1|2e-42PREDICTED: dicarboxylate transporter 1, chloroplastic [Nicotiana tomentosiformi757002843 (7)ref|XP_004142115.1|3e-94PREDICTED: dicarboxylate transporter 1, chloroplastic-like [Cucumis sativus] gb
JMFF014K14Sequence592008785 (7)ref|XP_004250945.1|7e-48PREDICTED: dicarboxylate transporter 1, chloroplastic [Solanum lycopersicum]668002843 (7)ref|XP_009777235.1|7e-90PREDICTED: dicarboxylate transporter 1, chloroplastic [Nicotiana sylvestris]
JMFF022M02Sequence491008785 (7)ref|XP_010102341.1|9e-232-oxoglutarate/malate translocator [Morus notabilis] gb|EXB93302.1| 2-oxoglutara544002843 (7)ref|XP_006850217.1|3e-57hypothetical protein AMTR_s00022p00253280 [Amborella trichopoda] gb|ERN11798.1|
JMFF033C03Sequence297008785 (7)606002843 (7)ref|XP_009777235.1|9e-90PREDICTED: dicarboxylate transporter 1, chloroplastic [Nicotiana sylvestris]
JMFF037J19Sequence534008785 (7)ref|XP_010102341.1|3e-302-oxoglutarate/malate translocator [Morus notabilis] gb|EXB93302.1| 2-oxoglutara733002843 (7)ref|XP_004162089.1|2e-90PREDICTED: dicarboxylate transporter 1, chloroplastic-like [Cucumis sativus]
JMFF047N03Sequence614008785 (7)ref|XP_004250945.1|3e-53PREDICTED: dicarboxylate transporter 1, chloroplastic [Solanum lycopersicum]602002843 (7)ref|XP_009777235.1|5e-71PREDICTED: dicarboxylate transporter 1, chloroplastic [Nicotiana sylvestris]
JMSF020J10Sequence688008785 (7)ref|XP_004250945.1|4e-64PREDICTED: dicarboxylate transporter 1, chloroplastic [Solanum lycopersicum]757002843 (7)ref|XP_004162089.1|8e-90PREDICTED: dicarboxylate transporter 1, chloroplastic-like [Cucumis sativus]

Alignment

This contig is upended


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rJMFF037J19+                                    TGGGTTTTTGGCAGCGTGTTAAATATAGACGCTG
rJMFF008H18+             CTCTGCTTATTACGGTGGGTCTTTGGGTTTTTGGCAGCGTGTTAAATATAGACGCTG
rJMSF020J10+                                    TGGGTTTTNGGCAGCGTGTTAAATATAGACGCTG
                      ____________________________________________________________
consensus                CTCTGCTTATTACGGTGGGTCTTTGGGTTTTTGGCAGCGTGTTAAATATAGACGCTG
 
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rJMFF037J19+          TTACTGCCGCGATTCTTGGGTTAACTATCCTCCTGGTGACCGGAGTAGTCTCATGGAAGG
rJMFF008H18+          TTACTGCCGCGATTCTTGGGTTAACTATCCTCCTGGTGACCGGAGTAGTCTCATGGAAGG
rJMFF014K14+                                             GTGACCGGAGTAGTCTCATGGAAGG
rJMFF033C03+                                              TGACCGGAGTAGTCTCATGGAAGG
rJMSF020J10+          TTACTGCCGCGATTCTTGGGTTAACTATCCTCCTGGTGACCGGAGTAGTCTCATGGAAGG
                      ____________________________________________________________
consensus             TTACTGCCGCGATTCTTGGGTTAACTATCCTCCTGGTGACCGGAGTAGTCTCATGGAAGG
 
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rJMFF037J19+          AATGTTTATCCGAAGCAGTTGCTTGGGATACCCTCACTTGGTTCGCGGCGCTCATTGCCA
rJMFF008H18+          AATGTTTATCCGAAGCAGTTGCTTGGGATACCCTCACTTGGTTCGCGGCGCTCATTGCCA
rJMFF014K14+          AATGTTTATCCGAAGCAGTTGCTTGGGATACCCTCACTTGGTTCGCGGCGCTCATTGCCA
rJMFF033C03+          AATGTTTATCCGAAGCAGTTGCTTGGGATACCCTCACTTGGTTCGCGGCGCTCATTGCCA
rJMFF047N03+                                                              CATTGCCA
rJMSF020J10+          AATGTTTATCCGAAGCAGTTGCTTGGGATACCCTCACTTGGTTCGCGGCGCTCATTGCCA
                      ____________________________________________________________
consensus             AATGTTTATCCGAAGCAGTTGCTTGGGATACCCTCACTTGGTTCGCGGCGCTCATTGCCA
 
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rJMFF037J19+          TGGCGGGTTATCTAAACAAATATGGCCTAATCTCGTGGTTTAGCGAGACTGTTGTCAAGG
rJMFF008H18+          TGGCGGGTTATCTAAACAAATATGGCCTAATCTCGTGGTTTAGCGAGACTGTTGTCAAGG
rJMFF014K14+          TGGCGGGTTATCTAAACAAATATGGCCTAATCTCGTGGTTTAGCGAGACTGTTGTCAAGG
rJMFF033C03+          TGGCGGGTTATCTAAACAAATATGGCCTAATCTCGTGGTTTAGCGAGACTGTTGTCAAGG
rJMFF047N03+          TGGCGGGTTATCTAAACAAATATGGCCTAATCTCGTGGTTTAGCGAGACTGTTGTCAAGG
rJMFF022M02+                                                            GTTGTCAAGG
rJMSF020J10+          TGGCGGGTTATCTAAACAAATATGGCCTAATCTCGTGGTTTAGCGAGACTGTTGTCAAGG
                      ____________________________________________________________
consensus             TGGCGGGTTATCTAAACAAATATGGCCTAATCTCGTGGTTTAGCGAGACTGTTGTCAAGG
 
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rJMFF037J19+          TTGTTGGTGGATTAGGCCTATCATGGCAGCTATCGTTCGGGATCCTAGTTCTCCTCTACT
rJMFF008H18+          TTGTTGGTGGATTAGGCCTATCATGGCAGCTATCGTTCGGGATCCTAGTTCTCCTCTACT
rJMFF014K14+          TTGTTGGTGGATTAGGCCTATCATGGCAGCTATCGTTCGGGATCCTAGTTCTCCTCTACT
rJMFF033C03+          TTGTTGGTGGATTAGGCCTATCATGGCAGCTATCGTTCGGGATCCTAGTTCTCCTCTACT
rJMFF047N03+          TTGTTGGTGGATTAGGCCTATCATGGCAGCTATCGTTCGGGATCCTAGTTCTCCTCTACT
rJMFF022M02+          TTGTTGGTGGATTAGGCCTATCATGGCAGCTATCGTTCGGGATCCTAGTTCTCCTCTACT
rJMSF020J10+          TTGTTGGTGGATTAGGCCTATCATGGCAGCTATCGTTCGGGATCCTAGTTCTCCTCTACT
                      ____________________________________________________________
consensus             TTGTTGGTGGATTAGGCCTATCATGGCAGCTATCGTTCGGGATCCTAGTTCTCCTCTACT
 
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rJMFF037J19+          TCTACTCCCACTACTTCTTTGCGAGCGGGGCTGCTCACATTGGGGCCATGTTTACCGCAT
rJMFF008H18+          TCTACTCCCACTACTTCTTTGCGAGCGGGGCTGCTCACATTGGGGCCATGTTTACCGCAT
rJMFF014K14+          TCTACTCCCACTACTTCTTTGCGAGCGGGGCTGCTCACATTGGGGCCATGTTTACCGCAT
rJMFF033C03+          TCTACTCCCACTACTTCTTTGCGAGCGGGGCTGCTCACATTGGGGCCATGTTTACCGCAT
rJMFF047N03+          TCTACTCCCACTACTTCTTTGCGAGCGGGGCTGCTCACATTGGGGCCATGTTTACCGCAT
rJMFF022M02+          TCTACTCCCACTACTTCTTTGCGAGCGGGGCTGCTCACATTGGGGCCATGTTTACCGCAT
rJMSF020J10+          TCTACTCCCACTACTTCTTTGCGAGCGGGGCTGCTCACATTGGGGCCATGTTTACCGCAT
                      ____________________________________________________________
consensus             TCTACTCCCACTACTTCTTTGCGAGCGGGGCTGCTCACATTGGGGCCATGTTTACCGCAT
 
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rJMFF037J19+          TCTTATCTGTCGCTAGTGCTCTTGGCACGCCCCCGTACTTGGGAGCCCTGGTGTTGTCGT
rJMFF008H18+          TCTTATCTGTCGCTAGTGCTCTTGGCACGCCCCCGTACTTGGGAGCCCTGGTGTTGTCGT
rJMFF014K14+          TCTTATCTGTCGCTAGTGCTCTTGGCACGCCCCCGTACTTGGGAGCCCTGGTGTTGTCGT
rJMFF033C03+          TCTTATCTGTCGCTAGTGCTCTTGGCACGCCCCCGTACTTGGGAGCCCTGGTGTTGTCGT
rJMFF047N03+          TCTTATCTGTCGCTAGTGCTCTTGGCACGCCCCCGTACTTGGGAGCCCTGGTGTTGTCGT
rJMFF022M02+          TCTTATCTGTCGCTAGTGCTCTTGGCACGCCCCCGTACTTGGGAGCCCTGGTGTTGTCGT
rJMSF020J10+          TCTTATCTGTCGCTAGTGCTCTTGGCACGCCCCCGTACTTGGGAGCCCTGGTGTTGTCGT
                      ____________________________________________________________
consensus             TCTTATCTGTCGCTAGTGCTCTTGGCACGCCCCCGTACTTGGGAGCCCTGGTGTTGTCGT
 
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rJMFF037J19+          TCCTCTCGAACATCATGGGCGGCCTCACCCACTATGGGATCGGATCCGCGCCCGTGTTTT
rJMFF008H18+          TCCTCTCGAACATCATGGGCGGCCTCACCCACTATGGGATCGGATCCGCGCCCGTGTTTT
rJMFF014K14+          TCCTCTCGAACATCATGGGCGGCCTCACCCACTATGGGATCGGATCCGCGCCCGTGTTTT
rJMFF033C03+          TCCTCTCGAACATCATGGGCGGCCTCACCCACTATGGGATCGGATCCGCGCCCGTGTTTT
rJMFF047N03+          TCCTCTCGAACATCATGGGCGGCCTCACCCACTATGGGATCGGATCCGCGCCCGTGTTTT
rJMFF022M02+          TCCTCTCGAACATCATGGGCGGCCTCACCCACTATGGGATCGGATCCGCGCCCGTGTTTT
rJMSF020J10+          TCCTCTCGAACATCATGGGCGGCCTCACCCACTATGGGATCGGATCCGCGCCCGTGTTTT
                      ____________________________________________________________
consensus             TCCTCTCGAACATCATGGGCGGCCTCACCCACTATGGGATCGGATCCGCGCCCGTGTTTT
 
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rJMFF037J19+          ATGGCGCGAACTATGTCCCACTTGCCAAATGGTGGGGGTATGGGTTTTTAGTCTCTGTGG
rJMFF008H18+          ATGGCGCGAACTATGTCCCACTTGCCAAATGGTGGGGGTATGGGTTTTTAGTCTCTGTGG
rJMFF014K14+          ATGGCGCGAACTATGTCCCACTTGCCAAATGGTGGGGGTATGGGTTTTTAGTCTCTGTGG
rJMFF033C03+          ATGGCGCGAACTATGTCCCACTTGCCAAATGGTGGGGGTATGGGTTTTTAGTCTCTGTGG
rJMFF047N03+          ATGGCGCGAACTATGTCCCACTTGCCAAATGGTGGGGGTATGGGTTTTTAGTCTCTGTGG
rJMFF022M02+          ATGGCGCGAACTATGTCCCACTTGCCAAATGGTGGGGGTATGGGTTTTTAGTCTCTGTGG
rJMSF020J10+          ATGGCGCGAACTATGTCCCACTTGCCAAATGGTGGGGGTATGGGTTTTTAGTCTCTGTGG
                      ____________________________________________________________
consensus             ATGGCGCGAACTATGTCCCACTTGCCAAATGGTGGGGGTATGGGTTTTTAGTCTCTGTGG
 
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rJMFF037J19+          TTAATATTATCATTTGGCTTGGAGTTGGAGGGATTTGGTGGAAAGCCATTGGGTTGTGGT
rJMFF008H18+          TTAATATTATCATTTGGCTTGGAGTTGGAGGGATTTGGTGGAAAGCCATTGGGTTGTGGT
rJMFF014K14+          TTAATATTATCATTTGGCTTGGAGTTGGAGGGATTTGGTGGAAAGCCATTGGGTTGTGGT
rJMFF033C03+          TTAATATTATCATTTGGCTTGGAGTTGGAGGGATTTGGTGGAAAGCCATTGGGTTGTGGT
rJMFF047N03+          TTAATATTATCATTTGGCTTGGAGTTGGAGGGATTTGGTGGAAAGCCATTGGGTTGTGGT
rJMFF022M02+          TTAATATTATCATTTGGCTTGGAGTTGGAGGGATTTGGTGGAAAGCCATTGGGTTGTGGT
rJMSF020J10+          TTAATATTATCATTTGGCTTGGAGTTGGAGGGATTTGGTGGAAAGCCATTGGGTTGTGGT
                      ____________________________________________________________
consensus             TTAATATTATCATTTGGCTTGGAGTTGGAGGGATTTGGTGGAAAGCCATTGGGTTGTGGT
 
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rJMFF037J19+          GATTGCTTCTTTAGATGGGCAAGTAGTTTTGTATTCTTTGCCTTGAAAGGTTGAGTTTTT
rJMFF008H18+          GATTGCTTCTTTAGATGGGCAAGTAGTTTTGTATTCTTTGCCTTGAAAGGTTGAGTTTTT
rJMFF014K14+          GATTGCTTCTTTAGATGGGCAAGTAGTTTTGTATTCTTTGCCTTGAAAGGTTGAGTTTTT
rJMFF033C03+          GATTGCTTCTTTAGATGGGCAAGTAGTTTTGTATTCTTTGCCTTGAAAGGTTGAGTTTTT
rJMFF047N03+          GATTGCTTCTTTAGATGGGCAAGTAGTTTTGTATTCTTTGCCTTGAAAGGTTGAGTTTTT
rJMFF022M02+          GATTGCTTCTTTAGATGGGCAAGTAGTTTCGTATTCTTTGCCTTGAAAGGTTGAGTTTTT
rJMSF020J10+          GATTGCTTCTTTAGATGGGCAAGTAGTTTTGTATTCTTTGCCTTGAAAGGTTGAGTTTTT
                      ____________________________________________________________
consensus             GATTGCTTCTTTAGATGGGCAAGTAGTTTTGTATTCTTTGCCTTGAAAGGTTGAGTTTTT
 
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rJMFF037J19+          AGTGGGGAGAGATGTAGTGGATGATGCTTTTTGCACATAGTTGGGGTTGTTTATACTTGG
rJMFF008H18+          AGTGGGGAGAGATGTAGTGGATGATGCTTTTTGCACATAGTTGGGGTTGTTTATACTTGG
rJMFF014K14+          AGTGGGGAGAGATGTAGTGGATGATGCTTTTTGCACATAGTTGGGGTTGTTTATACTTGG
rJMFF033C03+          AGTGGGGAGAGATGTAGTGGATGATGCTTTTTGCACATAG                    
rJMFF047N03+          AGTGGGGAGAGATGTAGTGGATGATGCTTTTTGCACATAGTTGGGGTTGTTTATACTTGG
rJMFF022M02+          AGTGGGGAGAGATGTAGTGGATGATGCTTTTTGCACATAGTTGGGGTTGTTTATACTTGG
rJMSF020J10+          AGTGGGGAGAGATGTAGTGGATGATGCTTTTTGCACATAGTTGGGGTTGTTTATACTTGG
                      ____________________________________________________________
consensus             AGTGGGGAGAGATGTAGTGGATGATGCTTTTTGCACATAGTTGGGGTTGTTTATACTTGG
 
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rJMFF037J19+          AAGTTCAGATTTGTATGCAGAATTATTTATACAAAAAGA                     
rJMFF008H18+          AAGTTCAGATTTGTATGCAGAATTATTTATACAAAAAGAA                    
rJMFF014K14+          AAGTTCAGATTTGTATGCAGAATTATTTATACAAAAAGAA                    
rJMFF047N03+          AAGTTCAGATTTGTATGCAGAATTATTTATACAAAAAGAAACTTCAAGTTGTAC      
rJMFF022M02+          AAGTTCAGATTTGTATGCAGAATTATT                                 
rJMSF020J10+          AAGTTCAGATTTGTATGCAGAATTATTTATACAAAAAGAAACTTCAAGTTGTACATTTTT
                      ____________________________________________________________
consensus             AAGTTCAGATTTGTATGCAGAATTATTTATACAAAAAGAAACTTCAAGTTGTACATTTTT