Contig 002841:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020H24Sequence628007758 (6)ref|XP_004232796.1|4e-55PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochond722002841 (2)ref|XP_010693189.1|6e-07PREDICTED: uncharacterized protein LOC104906171 isoform X2 [Beta vulgaris subsp
JMSF024O19Sequence650007758 (6)ref|XP_006347139.1|5e-60PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochond722002841 (2)emb|CBI21228.3|1e-07unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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rJMSF024O19+                                                                   CAG
rJMSF020H24+                                                                    AG
                      ____________________________________________________________
consensus                                                                      CAG
 
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rJMSF024O19+          GAAGTCAAAGTTTCTGATCCTTATGAAGCTGCTATAGTTGCATTACCTGCTGTTATCACT
rJMSF020H24+          GAAGTCAAAGTTTNTGATCCTTATGAAGCTGCTATAGTTGCATTACCTGCTGTTATCACT
                      ____________________________________________________________
consensus             GAAGTCAAAGTTTCTGATCCTTATGAAGCTGCTATAGTTGCATTACCTGCTGTTATCACT
 
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rJMSF024O19+          GAACGTTTACTGAGGATCATGCGGCTTGGCATTGCTACTAGATATGATGTAAATGTGATG
rJMSF020H24+          GAACGTTTACTGAGGATCATGCGGCTTGGCATTGCTACTAGATATGATGTAAATGTGATG
                      ____________________________________________________________
consensus             GAACGTTTACTGAGGATCATGCGGCTTGGCATTGCTACTAGATATGATGTAAATGTGATG
 
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rJMSF024O19+          TTATGAATTTTTTTTTTCAATGACAGTCTTAAATTTGCTCATGTTTTTTTTCCTATACCT
rJMSF020H24+          TTATGAATTTTTTTTTTCAATGACAGTCTTAAATTTGCTCATGTTTTTTTTCCTATACCT
                      ____________________________________________________________
consensus             TTATGAATTTTTTTTTTCAATGACAGTCTTAAATTTGCTCATGTTTTTTTTCCTATACCT
 
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rJMSF024O19+          TGGATGTTAAAAACTAAGAGTTGTCAGATAGATTGAGCTCATGAATTGGAATTGCATTCT
rJMSF020H24+          TGGATGTTAAAAACTAAGAGTTGTCAGATAGATTGAGCTCATGAATTGGAATTGCATTCT
                      ____________________________________________________________
consensus             TGGATGTTAAAAACTAAGAGTTGTCAGATAGATTGAGCTCATGAATTGGAATTGCATTCT
 
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rJMSF024O19+          ATATCAAAACAATGTAAGCCAGAAACCAATCTCTTGTACCATGTTTCCTTGTCTCTGCAT
rJMSF020H24+          ATATCAAAACAATGTAAGCCAGAAACCAATCTCTTGTACCATGTTTCCTTGTCTCTGCAT
                      ____________________________________________________________
consensus             ATATCAAAACAATGTAAGCCAGAAACCAATCTCTTGTACCATGTTTCCTTGTCTCTGCAT
 
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rJMSF024O19+          CAACTCCTTTGCTAGCGTAATAATAACTATGGAATGTCTTGTGGCAGAGATCTGAGCAAC
rJMSF020H24+          CAACTCCTTTGCTAGCGTAATAATAACTATGGAATGTCTTGTGGCAGAGATCTGAGCAAC
                      ____________________________________________________________
consensus             CAACTCCTTTGCTAGCGTAATAATAACTATGGAATGTCTTGTGGCAGAGATCTGAGCAAC
 
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rJMSF024O19+          AATCTCATTGGCAGTTTTCTTTCAGCTAACCAGCTTACTGGAAGTATTCCTGATTCTTTG
rJMSF020H24+          AATCTCATTGGCAGTTTTCTTTCAGCTAACCAGCTTACTGGAAGTATTCCTGATTCTTTG
                      ____________________________________________________________
consensus             AATCTCATTGGCAGTTTTCTTTCAGCTAACCAGCTTACTGGAAGTATTCCTGATTCTTTG
 
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rJMSF024O19+          TCTTCCCTGAGTCAATTATCAGCTATATATCCCTGATGAGCTACTTGAAGATGGCATGCA
rJMSF020H24+          TCTTCCCTGAGTCAATTATCAGCTATATATCCCTGATGAGCTACTTGAAGATGGCATGCA
                      ____________________________________________________________
consensus             TCTTCCCTGAGTCAATTATCAGCTATATATCCCTGATGAGCTACTTGAAGATGGCATGCA
 
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rJMSF024O19+          GATTTTGAGGGGCAGAGGCATGGCTTCAATGTACTCTTGGTCTTGCAAGAGGTTGACAAA
rJMSF020H24+          GATTTTGAGGGGCAGAGGCATGGCTTCAATGTACTCTTGGTCTTGCAAGAGGTTGACAAA
                      ____________________________________________________________
consensus             GATTTTGAGGGGCAGAGGCATGGCTTCAATGTACTCTTGGTCTTGCAAGAGGTTGACAAA
 
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rJMSF024O19+          TCACGTCCAAGAGTGAATCGACCCATGATGGGAGAGACTGAAGAGCACAATAAGCTACTG
rJMSF020H24+          TCACGTCCAAGAGTGAATCGACCCATGATGGGAGAGACTGAAGAGCACAATAAGCTACTG
                      ____________________________________________________________
consensus             TCACGTCCAAGAGTGAATCGACCCATGATGGGAGAGACTGAAGAGCACAATAAGCTACTG
 
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rJMSF024O19+          GTAGTTGTAGTTCTAGTGTTTGTATTCCAAGTTAACCATGTATATATAGACTGGAGAGTT
rJMSF020H24+          GTAGTTGTAGTTCTAGTGTTTGTATTCCAAGTTAACCATGTATATATAGACTGGAGAGTT
                      ____________________________________________________________
consensus             GTAGTTGTAGTTCTAGTGTTTGTATTCCAAGTTAACCATGTATATATAGACTGGAGAGTT
 
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rJMSF024O19+          GCGTCTCGATAGGATAGCCTTAAGCTTTTAATGGCCGCTTTTGGCTATCGTTTCGATGA 
rJMSF020H24+          GCGTCTCGATAGGATAGCCTTAAGCTTTTAATGGCCGCTTTTGGCTATCGTTTCGATGAC
                      ____________________________________________________________
consensus             GCGTCTCGATAGGATAGCCTTAAGCTTTTAATGGCCGCTTTTGGCTATCGTTTCGATGAC