Contig 002836:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018G21Sequence500002836 (9)gb|KHG21178.1|1e-7860S ribosomal protein L32-1 [Gossypium arboreum]605002836 (9)gb|KHG21178.1|5e-7860S ribosomal protein L32-1 [Gossypium arboreum]
JMFF031B16Sequence657002836 (9)ref|XP_002533495.1|2e-5460S ribosomal protein L32, putative [Ricinus communis] gb|EEF28882.1| 60S riboso630002836 (9)ref|XP_002533495.1|2e-5460S ribosomal protein L32, putative [Ricinus communis] gb|EEF28882.1| 60S riboso
JMFN035E15Sequence564002836 (9)ref|XP_002519752.1|3e-7560S ribosomal protein L32, putative [Ricinus communis] gb|EEF42725.1| 60S riboso
JMSF019E20Sequence258002836 (9)gb|KHG21178.1|3e-2160S ribosomal protein L32-1 [Gossypium arboreum]646002836 (9)gb|KHG21178.1|7e-7960S ribosomal protein L32-1 [Gossypium arboreum]
JMSF024I06Sequence642002836 (9)ref|XP_006437227.1|6e-77hypothetical protein CICLE_v10032912mg [Citrus clementina] gb|ESR50467.1| hypoth599002836 (9)ref|XP_006437227.1|4e-77hypothetical protein CICLE_v10032912mg [Citrus clementina] gb|ESR50467.1| hypoth

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF031B16- GTGCAGCCTCTTCGCGCTTACAGGG
rJMFF031B16+ GTGCAGCCTCTTCGCGCTTACAGGG
JMFF018G21- TGCATCCTCTTCGCGCTTACAGGG
rJMSF024I06+ AGCCTCTTCGCGCTTACAGGG
JMSF024I06- AGCCTCTTCGCGCTTACAGGG
rJMFF018G21+ TGCATCCTCTTCGCGCTTACAGGG
                      ____________________________________________________________
consensus GTGCAGCCTCTTCGCGCTTACAGGG
 
. : . : . : . : . : . :
JMFF031B16- AGCTCTCACCGCTTCAGCTCAG----TAGAAACTATGGCTGTCCCTTTGCTTGACAAAAA
rJMFF031B16+ AGCTCTCACCGCTTCAGCTCAG----TAGAAACTATGGCTGTCCCTTTGCTTGACAAAAA
JMFN035E15+ GTCCCTTTGCTTGATAAGAA
JMFF018G21- AGCTCTCACCGCTTCAGCTCAG----TAGAAACTATGGCTGTCCCTTTGCTTGACAAAAA
rJMSF024I06+ AGCTCTCACCGCTTCAGCTCAGGCAGTAGAAACTATGGCTGTCCCTTTGCTTGACAAAAA
JMSF024I06- AGCTCTCACCGCTTCAGCTCAGGCAGTAGAAACTATGGCTGTCCCTTTGCTTGACAAAAA
JMSF019E20- TTGCTTGACAAAAA
rJMFF018G21+ AGCTCTCACCGCTTCAGCTCAG----TAGAAACTATGGCTGTCCCTTTGCTTGACAAAAA
rJMSF019E20+ TTGCTTGACAAAAA
                      ____________________________________________________________
consensus AGCTCTCACCGCTTCAGCTCAG----TAGAAACTATGGCTGTCCCTTTGCTTGACAAAAA
 
. : . : . : . : . : . :
JMFF031B16- GATTGTGAAGAAGCGTGTCAAGAAGTTCAAGAGGCCACAGAGTGACCGATATATTTCTGT
rJMFF031B16+ GATTGTGAAGAAGCGTGTCAAGAAGTTCAAGAGGCCACAGAGTGACCGATATATTTCTGT
JMFN035E15+ GATTGTGAAGAAGCGCGTGAAGAAGTTTAAGAGGCCACAGAGTGACCGCTACATCTCTGT
JMFF018G21- GATTGTGAAGAAGCGTGTCAAGAAGTTCAAGAGGCCACAGAGTGACCGATATATTTCTGT
rJMSF024I06+ GATTGTGAAGAAGCGTGTCAAGAAGTTCAAGAGGCCACAGAGTGACCGATATATTTCTGT
JMSF024I06- GATTGTGAAGAAGCGTGTCAAGAAGTTCAAGAGGCCACAGAGTGACCGATATATTTCTGT
JMSF019E20- GATTGTGAAGAAGCGTGTCAAGAAGTTCAAGAGGCCACAGAGTGACCGATATATTTCTGT
rJMFF018G21+ GATTGTGAAGAAGCGTGTCAAGAAGTTCAAGAGGCCACAGAGTGACCGATATATTTCTGT
rJMSF019E20+ GATTGTGAAGAAGCGTGTCAAGAAGTTCAAGAGGCCACAGAGTGACCGATATATTTCTGT
                      ____________________________________________________________
consensus GATTGTGAAGAAGCGTGTCAAGAAGTTCAAGAGGCCACAGAGTGACCGATATATTTCTGT
 
. : . : . : . : . : . :
JMFF031B16- AAAGGAAAGCTGGCGGAGGCCTAAGGGTATTGACTCTCGTGTGAGGAGAAAGTTCAAAGG
rJMFF031B16+ AAAGGAAAGCTGGCGGAGGCCTAAGGGTATTGACTCTCGTGTGAGGAGAAAGTTCAAAGG
JMFN035E15+ TAAGGAAAACTGGCGTAGGCCCAAGGGTATTGATTCCCGTGTGAGGAGAAAGTTCAAAGG
JMFF018G21- AAAGGAAAGCTGGCGGAGGCCTAAGGGTATTGACTCTCGTGTGAGGAGAAAGTTCAAAGG
rJMSF024I06+ AAAGGAAAGCTGGCGGAGGCCTAAGGGTATTGACTCTCGTGTGAGGAGAAAGTTCAAAGG
JMSF024I06- AAAGGAAAGCTGGCGGAGGCCTAAGGGTATTGACTCTCGTGTGAGGAGAAAGTTCAAAGG
JMSF019E20- AAAGGAAAGCTGGCGGAGGCCTAAGGGTATTGACTCTCGTGTGAGGAGAAAGTTCAAAGG
rJMFF018G21+ AAAGGAAAGCTGGCGGAGGCCTAAGGGTATTGACTCTCGTGTGAGGAGAAAGTTCAAAGG
rJMSF019E20+ AAAGGAAAGCTGGCGGAGGCCTAAGGGTATTGACTCTCGTGTGAGGAGAAAGTTCAAAGG
                      ____________________________________________________________
consensus AAAGGAAAGCTGGCGGAGGCCTAAGGGTATTGACTCTCGTGTGAGGAGAAAGTTCAAAGG
 
. : . : . : . : . : . :
JMFF031B16- ATGCACTCTTATGCCCAATA-TGGTTATGGCTCAGACAAGAAGACCCGCCATTATCTTCC
rJMFF031B16+ ATGCACTCTTATGCCCAATA-TGGTTATGGCTCAGACAAGAAGACCCGCCATTATCTTCC
JMFN035E15+ ATGTACTCTGATGCCCAACATTGGCTATGGTTCAGACAAGAAGACCCGCCACTATCTACC
JMFF018G21- ATGCACTCTTATGCCCAATATTGGTTATGGCTCAGACAAGAAGACCCGCCATTATCTTCC
rJMSF024I06+ ATGCACTCTTATGCCCAATATTGGTTATGGCTCAGACAAGAAGACCCGCCATTATCTTCC
JMSF024I06- ATGCACTCTTATGCCCAATATTGGTTATGGCTCAGACAAGAAGACCCGCCATTATCTTCC
JMSF019E20- ATGCACTCTTATGCCCAATATTGG
rJMFF018G21+ ATGCACTCTTATGCCCAATATTGGTTATGGCTCAGACAAGAAGACCCGCCATTATCTTCC
rJMSF019E20+ ATGCACTCTTATGCCCAATATTGGTTATGGCTCAGACAAGAAGACCCGCCATTATCTTCC
                      ____________________________________________________________
consensus ATGCACTCTTATGCCCAATATTGGTTATGGCTCAGACAAGAAGACCCGCCATTATCTTCC
 
. : . : . : . : . : . :
JMFF031B16- CAATGGTTTCAAGAAATTCGTTGTTCATAATGTCCAGGAGTTGGAACTTTTGATGATGCA
rJMFF031B16+ CAATGGTTTCAAGAAATTCGTTGTTCATAATGTCCAGGAGTTGGAACTTTTGATGATGCA
JMFN035E15+ AAATGGTTTTAAGAAATTCCTTGTGCATAATGTTCAAGAATTGGAACTCTTGATGATGCA
JMFF018G21- CAATGGTTTCAAGAAATTCGTTGTTCATAATGTCCAGGAGTTGGAACTTTTGATGATGCA
rJMSF024I06+ CAATGGTTTCAAGAAATTCGTTGTTCATAATGTCCAGGAGTTGGAACTTTTGATGATGCA
JMSF024I06- CAATGGTTTCAAGAAATTCGTTGTTCATAATGTCCAGGAGTTGGAACTTTTGATGATGCA
rJMFF018G21+ CAATGGTTTCAAGAAATTCGTTGTTCATAATGTCCAGGAGTTGGAACTTTTGATGATGCA
rJMSF019E20+ CAATGGTTTCAAGAAATTCGTTGTTCATAATGTCCAGGAGTTGGAACTTTTGATGATGCA
                      ____________________________________________________________
consensus CAATGGTTTCAAGAAATTCGTTGTTCATAATGTCCAGGAGTTGGAACTTTTGATGATGCA
 
. : . : . : . : . : . :
JMFF031B16- CAACAGGACTTACTGTGCAGAGATTGCGCACAATGTATCCACCAGGAAAAGGAAGGAAAT
rJMFF031B16+ CAACAGGACTTACTGTGCAGAGATTGCGCACAATGTATCCACCAGGAAAAGGAAGGAAAT
JMFN035E15+ CAACAGGACTTACTGTGCGGAGATAGCACACAATATTTCAACAAAGAAAAGAAAGGAAAT
JMFF018G21- CAACAGGACTTACTGTGCAGAGATTGCGCACAATGTATCCACCAGGAAAAGGAAGGAAAT
rJMSF024I06+ CAACAGGACTTACTGTGCAGAGATTGCGCACAATGTATCCACCAGGAAAAGGAAGGAAAT
JMSF024I06- CAACAGGACTTACTGTGCAGAGATTGCGCACAATGTATCCACCAGGAAAAGGAAGGAAAT
rJMFF018G21+ CAACAGGACTTACTGTGCAGAGATTGCGCACAATGTATCCACCAGGAAAAGGAAGGAAAT
rJMSF019E20+ CAACAGGACTTACTGTGCAGAGATTGCGCACAATGTATCCACCAGGAAAAGGAAGGAAAT
                      ____________________________________________________________
consensus CAACAGGACTTACTGTGCAGAGATTGCGCACAATGTATCCACCAGGAAAAGGAAGGAAAT
 
. : . : . : . : . : . :
JMFF031B16- CGTTGAGCGTGCTTCCCAGTTGGATGTTGTTGTGACCAACAAATTGGCTAGGTTACGTAG
rJMFF031B16+ CGTTGAGCGTGCTTCCCAGTTGGATGTTGTTGTGACCAACAAATTGGCTAGGTTACGTAG
JMFN035E15+ TGTTGAGCGCGCTGCACAGTTGGATGTTGTTGTGACCAACAAATTGGCAAGGTTGCGTAG
JMFF018G21- CGTTGAGCGTGCTTCCCAGTTGGATGTTGTTGTGACCAACAAATTGGCTAGGTTACGTAG
rJMSF024I06+ CGTTGAGCGTGCTTCCCAGTTGGATGTTGTTGTGACCAACAAATTGGCTAGGTTACGTAG
JMSF024I06- CGTTGAGCGTGCTTCCCAGTTGGATGTTGTTGTGACCAACAAATTGGCTAGGTTACGTAG
rJMFF018G21+ CGTTGAGCGTGCTTCCCAGTTGGATGTTGTTGTGACCAACAAATTGGCTAGGTTACGTAG
rJMSF019E20+ CGTTGAGCGTGCTTCCCAGTTGGATGTTGTTGTGACCAACAAATTGGCTAGGTTACGTAG
                      ____________________________________________________________
consensus CGTTGAGCGTGCTTCCCAGTTGGATGTTGTTGTGACCAACAAATTGGCTAGGTTACGTAG
 
. : . : . : . : . : . :
JMFF031B16- CCAGGAAGACGAGT
rJMFF031B16+ CCAGGAAGACGAGTGAGCTA
JMFN035E15+ CCAGGAAGACGAGTGAGCTA
JMFF018G21- CCAGGAAGACGAGTGAGCTATCTTTTGTTATAGTTTCAGGCATTCTGGTGATTTATTTAC
rJMSF024I06+ CCAGGAAGACGAGTGAGCTATCTTTTGTTATAGTTTCAGGCATTCTGGTGATTTATTTAC
JMSF024I06- CCAGGAAGACGAGT
rJMFF018G21+ CCAGGAAGACGAGTGAGCTATCTTTTGTTATAGTTTCAGGCATTCTGGTGATTTATTTAC
rJMSF019E20+ CCAGGAAGACGAGTGAGCTATCTTTTGTTATAGTTTCAGGCATTCTGGTGATTTATTTAC
                      ____________________________________________________________
consensus CCAGGAAGACGAGTGAGCTATCTTTTGTTATAGTTTCAGGCATTCTGGTGATTTATTTAC
 
. : . : . : . : . : . :
rJMSF024I06+ CCAACCAAGTTATATTTGTTTTAGTTTGTATTTCAGAACACTTTGGCCTTACTGTTCACT
rJMFF018G21+ CCAACCAAGTTATATTTGTTTTAGTTTGTATTTCAGAACACTTTGGCCTTACTGTTCACT
rJMSF019E20+ CCAACCAAGTTATATTTGTTTTAGTTTGTATTTCAGAACACTTTGGCCTTACTGTTCACT
                      ____________________________________________________________
consensus CCAACCAAGTTATATTTGTTTTAGTTTGTATTTCAGAACACTTTGGCCTTACTGTTCACT
 
. : . : . : . : . : . :
rJMSF024I06+ GTTCATTTTACATTTTTGCTTTATTATGTACTCTG
rJMFF018G21+ GTTCATTTTACATTTTTGCTTTATTATGTACTCTGTATCTTTCTG
rJMSF019E20+ GTTCATTTTACATTTTTGCTTTATTATGTACTCTGTATCTTTCTGCCAAGCTTTTGCGTA
                      ____________________________________________________________
consensus GTTCATTTTACATTTTTGCTTTATTATGTACTCTGTATCTTTCTGCCAAGCTTTTGCGTA