Contig 002831:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011I10Sequence464006755 (5)ref|XP_009766854.1|3e-39PREDICTED: phosphoinositide phospholipase C 2-like [Nicotiana sylvestris]169002831 (4)
JMSF015G12Sequence530006755 (5)emb|CDP06481.1|1e-90unnamed protein product [Coffea canephora]131002831 (4)
JMSF019A12Sequence486006755 (5)ref|NP_001234203.1|7e-81PI-phospholipase C PLC1 [Solanum lycopersicum] gb|ABW81003.1| PI-phospholipase C131002831 (4)
JMSF030A17Sequence640006755 (5)ref|XP_009766854.1|3e-87PREDICTED: phosphoinositide phospholipase C 2-like [Nicotiana sylvestris]169002831 (4)

Alignment

This contig is upended


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rJMSF011I10+                        GNCNAAATNNNCNAGTNTTTTGNNTTTNTCNAAAGNNGNTTTTTTT
rJMSF030A17+                                                               TTTTTTT
rJMSF015G12+                                                               TTTTTTT
                      ____________________________________________________________
consensus                           GNCNAAATNNNCNAGTNTTTTGNNTTTNTCNAAAGNNGNTTTTTTT
 
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rJMSF011I10+          TTTTTGCTTGGTTTCCAATCTTCCTAGTCTGTGTGAAATGAAGTAGCAGTATACTTAAAT
rJMSF030A17+          TTTTTGCTTGGTTTCCAATCTTCCTAGTCTGTGTGAAATGAAGTAGCAGTATACTTAAAT
rJMSF015G12+          TTTTTGCTTGGTTTCCAATCTTCCTAGTCTGTGTGAAATGAAGTAGCAGTATACTTAAAT
rJMSF019A12-                                                          GTATACTTAAAT
                      ____________________________________________________________
consensus             TTTTTGCTTGGTTTCCAATCTTCCTAGTCTGTGTGAAATGAAGTAGCAGTATACTTAAAT
 
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rJMSF011I10+          CTTGTTTGATGTGTGCTTGTAAGTTGTAATAGATTGAATATGGAC               
rJMSF030A17+          CTTGTTTGA-GTGTGCTTGTAAGTTGTAATAGATTGAATATGGAC               
rJMSF015G12+          CTTGTTNGA-GTGTGCTTGTAAGTTGTAATAGATTGAATATGGAC               
rJMSF019A12-          CTTGTTTGA-GTGTGCTTGTAAGTTGTAATAGATTGAATATGGACTATGCCAATAAGCAT
                      ____________________________________________________________
consensus             CTTGTTTGA-GTGTGCTTGTAAGTTGTAATAGATTGAATATGGACTATGCCAATAAGCAT
 
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rJMSF019A12-          ATATGTACTCTGTATTTAAATAAATAAAATGCCATTTATAACTAAAAAAAAAAAAAAGNN
                      ____________________________________________________________
consensus             ATATGTACTCTGTATTTAAATAAATAAAATGCCATTTATAACTAAAAAAAAAAAAAAGNN