Contig 002827:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018H09Sequence577002827 (3)ref|XP_004246393.1|3e-73PREDICTED: NHP2-like protein 1 [Solanum lycopersicum] ref|XP_004247866.1| PREDIC691002827 (3)ref|XP_004246393.1|1e-72PREDICTED: NHP2-like protein 1 [Solanum lycopersicum] ref|XP_004247866.1| PREDIC
JMSF029C17Sequence699002295 (4)ref|XP_009802254.1|5e-77PREDICTED: toll/interleukin-1 receptor-like protein, partial [Nicotiana sylvest748002827 (3)ref|XP_004246393.1|1e-72PREDICTED: NHP2-like protein 1 [Solanum lycopersicum] ref|XP_004247866.1| PREDIC

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF029C17+ AAGTGATAGGGAGTTATTTGTCTGACAAATCTAAGGAGGAATGGATTAGTGCCTTTGAA
                      ____________________________________________________________
consensus AAGTGATAGGGAGTTATTTGTCTGACAAATCTAAGGAGGAATGGATTAGTGCCTTTGAA
 
. : . : . : . : . : . :
JMSF018H09- CTCCCCAAAACCCTAGTG
rJMSF029C17+ AAATTGAGAAAAATTCCTCATGATGATGTTCTAGCTAAACTCCTCCCCAAAACCCTAGTG
                      ____________________________________________________________
consensus AAATTGAGAAAAATTCCTCATGATGATGTTCTAGCTAAACTCCTCCCCAAAACCCTAGTG
 
. : . : . : . : . : . :
JMSF018H09- GTCTTAACACTCGGATTCTCCATTTTCAGCCTAGAAGTCTCCATGGCTACCGAAGTTGTG
rJMSF029C17+ GTCTTAACACTCGGATTCTCCATTTTCAGCCTAGAAGTCTCCATGGCTACCGAAGTTGTG
rJMSF018H09+ GAAGTTGTG
                      ____________________________________________________________
consensus GTCTTAACACTCGGATTCTCCATTTTCAGCCTAGAAGTCTCCATGGCTACCGAAGTTGTG
 
. : . : . : . : . : . :
JMSF018H09- AACCCAAAAGCATATCCGCTGGCCGATGCGCAGCTCACCACGACAATAATGGACCTGGTT
rJMSF029C17+ AACCCAAAAGCATATCCGCTGGCCGATGCGCAGCTCACCACGACAATAATGGACCTGGTT
rJMSF018H09+ AACCCAAAAGCATATCCGCTGGCCGATGCGCAGCTCACCACGACAATAATGGACCTGGTT
                      ____________________________________________________________
consensus AACCCAAAAGCATATCCGCTGGCCGATGCGCAGCTCACCACGACAATAATGGACCTGGTT
 
. : . : . : . : . : . :
JMSF018H09- CAGCAAGCTGCCAACTATAAGCAGCTTAAAAAGGGGGCAAATGAAGCCACTAAGACACTA
rJMSF029C17+ CAGCAAGCTGCCAACTATAAGCAGCTTAAAAAGGGGGCAAATGAAGCCACTAAGACACTA
rJMSF018H09+ CAGCAAGCTGCCAACTATAAGCAGCTTAAAAAGGGGGCAAATGAAGCCACTAAGACACTA
                      ____________________________________________________________
consensus CAGCAAGCTGCCAACTATAAGCAGCTTAAAAAGGGGGCAAATGAAGCCACTAAGACACTA
 
. : . : . : . : . : . :
JMSF018H09- AACAGGGGAATTTCTGAGTTTATTGTGATGGCGGCTGATACTGAGCCACTTGAAATCCTC
rJMSF029C17+ AACAGGGGAATTTCTGAGTTTATTGTGATGGCGGCTGATACTGAGCCACTTGAAATCCTC
rJMSF018H09+ AACAGGGGAATTTCTGAGTTTATTGTGATGGCGGCTGATACTGAGCCACTTGAAATCCTC
                      ____________________________________________________________
consensus AACAGGGGAATTTCTGAGTTTATTGTGATGGCGGCTGATACTGAGCCACTTGAAATCCTC
 
. : . : . : . : . : . :
JMSF018H09- CTTCATCTTCCACTTCTTGCTGAGGATAAGAATGTCCCCTATGTGTTTGTCCCTTCCAAA
rJMSF029C17+ CTTCATCTTCCACTTCTTGCTGAGGATAAGAATGTCCCCTATGTGTTTGTCCCTTCCAAA
rJMSF018H09+ CTTCATCTTCCACTTCTTGCTGAGGATAAGAATGTCCCCTATGTGTTTGTCCCTTCCAAA
                      ____________________________________________________________
consensus CTTCATCTTCCACTTCTTGCTGAGGATAAGAATGTCCCCTATGTGTTTGTCCCTTCCAAA
 
. : . : . : . : . : . :
JMSF018H09- CAAGCTCTCGGCAGAGCATGTGGTGTTACCCGACCCGTGATTGCTTGTTCTGTCACAAGC
rJMSF029C17+ CAAGCTCTCGGCAGAGCATGTGGTGTTACCCGACCCGTGATTGCTTGTTCTGTCACAAGC
rJMSF018H09+ CAAGCTCTCGGCAGAGCATGTGGTGTTACCCGACCCGTGATTGCTTGTTCTGTCACAAGC
                      ____________________________________________________________
consensus CAAGCTCTCGGCAGAGCATGTGGTGTTACCCGACCCGTGATTGCTTGTTCTGTCACAAGC
 
. : . : . : . : . : . :
JMSF018H09- AACGAGGGAAGCCAGTTGAAATCTCAAATACAGCAATTGAAGGATGCTATTGAGAAGCTC
rJMSF029C17+ AACGAGGGAAGCCAGTTGAAATCTCAAATACAGCAATTGAAGGATGCTATTGAGAAGCTC
rJMSF018H09+ AACGAGGGAAGCCAGTTGAAATCTCAAATACAGCAATTGAAGGATGCTATTGAGAAGCTC
                      ____________________________________________________________
consensus AACGAGGGAAGCCAGTTGAAATCTCAAATACAGCAATTGAAGGATGCTATTGAGAAGCTC
 
. : . : . : . : . : . :
JMSF018H09- CTGATATAAATGC
rJMSF029C17+ CTGATATAAATGC
rJMSF018H09+ CTGATATAAATGCCAGAAAGTCATTTCAGCATGATGGGCCTCATGAACACCAGATTAGAT
                      ____________________________________________________________
consensus CTGATATAAATGCCAGAAAGTCATTTCAGCATGATGGGCCTCATGAACACCAGATTAGAT
 
. : . : . : . : . : . :
rJMSF018H09+ TAACTGTGAGGCTTTGACTGACCGAGTTTTCCCATGATGCTATAATGTGTTTGTCTGTTT
                      ____________________________________________________________
consensus TAACTGTGAGGCTTTGACTGACCGAGTTTTCCCATGATGCTATAATGTGTTTGTCTGTTT
 
. : . : . : . : . : . :
rJMSF018H09+ TATGAATTTCATGTTTGGGCCAAAAAGAAAAGAAAAAAAAATGAGAGAAGAGAGGATAAC
                      ____________________________________________________________
consensus TATGAATTTCATGTTTGGGCCAAAAAGAAAAGAAAAAAAAATGAGAGAAGAGAGGATAAC
 
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rJMSF018H09+ CTATATATTTGCTCCAGTCATTTTGTATTATTGGCTTGAAGGATTTCATATATATTGTTT
                      ____________________________________________________________
consensus CTATATATTTGCTCCAGTCATTTTGTATTATTGGCTTGAAGGATTTCATATATATTGTTT
 
. : . : . : . : . : . :
rJMSF018H09+ TGTACTTTTATCAAGTGTATTGGCTGAAGGTTAGGTATCTCTAGATTCATTCAAATTGAC
                      ____________________________________________________________
consensus TGTACTTTTATCAAGTGTATTGGCTGAAGGTTAGGTATCTCTAGATTCATTCAAATTGAC