| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF014B10 | Sequence | 249 | 002811 (8) | emb|CDP02936.1| | 2e-08 | unnamed protein product [Coffea canephora] | 746 | 002811 (8) | gb|KHF98178.1| | 6e-96 | ADP-ribosylation factor 1 [Gossypium arboreum] gb|KJB53830.1| hypothetical prote |
| JMSF016F24 | Sequence | 474 | 002811 (8) | gb|KJB53832.1| | 1e-89 | hypothetical protein B456_009G006900 [Gossypium raimondii] | 763 | 002811 (8) | gb|KJB53832.1| | 1e-78 | hypothetical protein B456_009G006900 [Gossypium raimondii] |
| JMSF020B21 | Sequence | 652 | 002811 (8) | gb|ACJ84177.1| | 3e-87 | unknown [Medicago truncatula] | 753 | 002811 (8) | gb|KHF98178.1| | 2e-98 | ADP-ribosylation factor 1 [Gossypium arboreum] gb|KJB53830.1| hypothetical prote |
| JMSF021B21 | Sequence | 717 | 002811 (8) | gb|KJB53832.1| | 2e-88 | hypothetical protein B456_009G006900 [Gossypium raimondii] | |||||
| JMSF029F01 | Sequence | 653 | 009525 (30) | emb|CBI32005.3| | 6e-109 | unnamed protein product [Vitis vinifera] | 676 | 002811 (8) | gb|KHF98178.1| | 2e-98 | ADP-ribosylation factor 1 [Gossypium arboreum] gb|KJB53830.1| hypothetical prote |
This contig is upended
. : . : . : . : . : . :
JMSF020B21- GGTAATTCGGGCCAGATCCGCACCAGGTTTACGGGTCGC
____________________________________________________________
consensus GGTAATTCGGGCCAGATCCGCACCAGGTTTACGGGTCGC
. : . : . : . : . : . :
JMSF020B21- GGAGTTCTTTGATTCCTCCACTCGTCCGTGCACTCTGTCTCTCTCTCTCTCTCTCCATTT
____________________________________________________________
consensus GGAGTTCTTTGATTCCTCCACTCGTCCGTGCACTCTGTCTCTCTCTCTCTCTCTCCATTT
. : . : . : . : . : . :
JMSF014B10- AGAGGATCAGAGGGTATTGCTGAT
JMSF020B21- CTTCGCATAAAGATTCTGAGTTATGCTCTGATACATAGAGGATCAGAGGGTATTGCTGAT
____________________________________________________________
consensus CTTCGCATAAAGATTCTGAGTTATGCTCTGATACATAGAGGATCAGAGGGTATTGCTGAT
. : . : . : . : . : . :
JMSF014B10- TTTGCTTGTAGATCTGATCTGCGAGGAACTTTGAATAAGGGAACGGGAAATTGAAAATGG
JMSF020B21- TTTGCTTGTAGATCTGATCTGCGAGGAACTTTGAATAAGGGAACGGGAAATTGAAAATGG
____________________________________________________________
consensus TTTGCTTGTAGATCTGATCTGCGAGGAACTTTGAATAAGGGAACGGGAAATTGAAAATGG
. : . : . : . : . : . :
JMSF014B10- GAATTGTGTTTACTCGGCTTTTCTCGTCGCTGTTTGGTAACAAGGAAGCTCGGATCCTTG
JMSF020B21- GAATTGTGTTTACTCGGCTTTTCTCGTCGCTGTTTGGTAACAAGGAAGCTCGGATCCTTG
____________________________________________________________
consensus GAATTGTGTTTACTCGGCTTTTCTCGTCGCTGTTTGGTAACAAGGAAGCTCGGATCCTTG
. : . : . : . : . : . :
JMSF014B10- TTCTTGGATTGGACAATGCTGG
JMSF020B21- TTCTTGGATTGGACAATGCTGGGAAAACCACGATCCTCTATCGGCTTCAGATGGGCGAAG
rJMSF029F01+ TTCTTGGATTGGACAATGCTGGGAAAACCACGATCCTCTATCGGCTTCAGATGGGCGAAG
rJMSF020B21+ TTCTTGGATTGGACAATGCTGGGAAAACCACGATCCTCTATCGGCTTCAGATGGGCGAAG
rJMSF014B10+ GACAATGCTGGGAAAACCACGATCCTCTATCGGCTTCAGATGGGCGAAG
JMSF016F24- GGCTTCAGATGGGCGAAG
rJMSF021B21+ TCGGCTTCAGATGGGCGAAG
____________________________________________________________
consensus TTCTTGGATTGGACAATGCTGGGAAAACCACGATCCTCTATCGGCTTCAGATGGGCGAAG
. : . : . : . : . : . :
JMSF020B21- TCGTTTCCACTATTCCAACAATTGGATTTAATGTCGAAACAGTGCAGTACAACAATATTA
rJMSF029F01+ TCGTTTCCACTATTCCAACAATTGGATTTAATGTCGAAACAGTGCAGTACAACAATATTA
rJMSF020B21+ TCGTTTCCACTATTCCAACAATTGGATTTAATGTCGAAACAGTGCAGTACAACAATATTA
rJMSF014B10+ TCGTTTCCACTATTCCAACAATTGGATTTAATGTCGAAACAGTGCAGTACAACAATATTA
JMSF016F24- TCGTTTCCACTATTCCAACAATTGGATTTAATGTCGAAACAGTGCAGTACAACAATATTA
rJMSF021B21+ TCGTTTCCACTATTCCAACAATTGGATTTAATGTCGAAACAGTGCAGTACAACAATATTA
rJMSF016F24+ ACAATTGGATTTAATGTCGAAACAGTGCAGTACAACAATATTA
____________________________________________________________
consensus TCGTTTCCACTATTCCAACAATTGGATTTAATGTCGAAACAGTGCAGTACAACAATATTA
. : . : . : . : . : . :
JMSF020B21- AGTTTCAAGTTTGGGATCTAGGTGGACAGACTAGTATCAGACCATACTGGAGGTGCTATT
rJMSF029F01+ AGTTTCAAGTTTGGGATCTAGGTGGACAGACTAGTATCAGACCATACTGGAGGTGCTATT
rJMSF020B21+ AGTTTCAAGTTTGGGATCTAGGTGGACAGACTAGTATCAGACCATACTGGAGGTGCTATT
rJMSF014B10+ AGTTTCAAGTTTGGGATCTAGGTGGACAGACTAGTATCAGACCATACTGGAGGTGCTATT
JMSF016F24- AGTTTCAAGTTTGGGATCTAGGTGGACAGACTAGTATCAGACCATACTGGAGGTGCTATT
rJMSF021B21+ AGTTTCAAGTTTGGGATCTAGGTGGACAGACTAGTATCAGACCATACTGGAGGTGCTATT
rJMSF016F24+ AGTTTCAAGTTTGGGATCTAGGTGGACAGACTAGTATCAGACCATACTGGAGGTGCTATT
____________________________________________________________
consensus AGTTTCAAGTTTGGGATCTAGGTGGACAGACTAGTATCAGACCATACTGGAGGTGCTATT
. : . : . : . : . : . :
JMSF020B21- TTCCAAATACTCAGGCCATAATCTATGTTGTTGATTCAAGTGACACTGACAGGCTGGTTA
rJMSF029F01+ TTCCAAATACTCAGGCCATAATCTATGTNGTTGATTCAAGTGACACTGACAGGCTGGTTA
rJMSF020B21+ TTCCAAATACTCAGGCCATAATCTATGTTGTTGATTCAAGTGACACTGACAGGCTGGTTA
rJMSF014B10+ TTCCAAATACTCAGGCCATAATCTATGTTGTTGATTCAAGTGACACTGACAGGCTGGTTA
JMSF016F24- TTCCAAATACTCAGGCCATAATCTATGTTGTTGATTCAAGTGACACTGACAGGCTGGTTA
rJMSF021B21+ TTCCAAATACTCAGGCCATAATCTATGTTGTTGATTCAAGTGACACTGACAGGCTGGTTA
rJMSF016F24+ TTCCAAATACTCAGGCCATAATCTATGTTGTTGATTCAAGTGACACTGACAGGCTGGTTA
____________________________________________________________
consensus TTCCAAATACTCAGGCCATAATCTATGTTGTTGATTCAAGTGACACTGACAGGCTGGTTA
. : . : . : . : . : . :
JMSF020B21- TTGCTAAAGAGGAGTTTCATGCCATACTGGAGGAGGAAGAGTTGAAAGGTGCTGCTGTTC
rJMSF029F01+ TTGCTAAAGAGGAGTTTCATGCCATACTGGAGGAGGAAGAGTTGAAAGGTGCTGCTGTTC
rJMSF020B21+ TTGCTAAAGAGGAGTTTCATGCCATACTGGAGGAGGAAGAGTTGAAAGGTGCTGCTGTTC
rJMSF014B10+ TTGCTAAAGAGGAGTTTCATGCCATACTGGAGGAGGAAGAGTTGAAAGGTGCTGCTGTTC
JMSF016F24- TTGCTAAAGAGGAGTTTCATGCCATACTGGAGGAGGAAGAGTTGAAAGGTGCTGCTGTTC
rJMSF021B21+ TTGCTAAAGAGGAGTTTCATGCCATACTGGAGGAGGAAGAGTTGAAAGGTGCTGCTGTTC
rJMSF016F24+ TTGCTAAAGAGGAGTTTCATGCCATACTGGAGGAGGAAGAGTTGAAAGGTGCTGCTGTTC
____________________________________________________________
consensus TTGCTAAAGAGGAGTTTCATGCCATACTGGAGGAGGAAGAGTTGAAAGGTGCTGCTGTTC
. : . : . : . : . : . :
JMSF020B21- TCATATTTGCTAACAAACAGGATCTTCCTGGTGCACTTGATGATGCTGCAGTGACTGAGT
rJMSF029F01+ TCATATTTGCTAACAAACAGGATCTTCCTGGTGCACTTGATGATGCTGCAGTGACTGAGT
rJMSF020B21+ TCATATTTGCTAACAAACAGGATCTTCCTGGTGCACTTGATGATGCTGCAGTGACTGAGT
rJMSF014B10+ TCATATTTGCTAACAAACAGGATCTTCCTGGTGCACTTGATGATGCTGCAGTGACTGAGT
JMSF016F24- TCATATTTGCTAACAAACAGGATCTTCCTGGTGCACTTGATGATGCTGCAGTGACTGAGT
rJMSF021B21+ TCATATTTGCTAACAAACAGGATCTTCCTGGTGCACTTGATGATGCTGCAGTGACTGAGT
rJMSF016F24+ TCATATTTGCTAACAAACAGGATCTTCCTGGTGCACTTGATGATGCTGCAGTGACTGAGT
____________________________________________________________
consensus TCATATTTGCTAACAAACAGGATCTTCCTGGTGCACTTGATGATGCTGCAGTGACTGAGT
. : . : . : . : . : . :
JMSF020B21- CCTTGGAGCTGCA
rJMSF029F01+ CCTTGGAGCTGCACAAGATTAAGAATAGACAATGGGCTATTTTTAAGACTTCTGCCATCA
rJMSF020B21+ CCTTGGAGCTGCACAAGATTAAGAATAGACAATGGGCTATTTTTAAGACTTCTGCCATCA
rJMSF014B10+ CCTTGGAGCTGCACAAGATTAAGAATAGACAATGGGCTATTTTTAAGACTTCTGCCATCA
JMSF016F24- CCTTGGAGCTGCACAAGATTAAGAATAGACAATGGGCTATTTTTAAGACTTCTGCCATCA
rJMSF021B21+ CCTTGGAGCTGCACAAGATTAAGAATAGACAATGGGCTATTTTTAAGACTTCTGCCATCA
rJMSF016F24+ CCTTGGAGCTGCACAAGATTAAGAATAGACAATGGGCTATTTTTAAGACTTCTGCCATCA
____________________________________________________________
consensus CCTTGGAGCTGCACAAGATTAAGAATAGACAATGGGCTATTTTTAAGACTTCTGCCATCA
. : . : . : . : . : . :
rJMSF029F01+ AAGGAGAGGGCCTCTTTGAGGGCTTAGACTGGTTGAGTAACACCCTCAAGGCAGGAGGTA
rJMSF020B21+ AAGGAGAGGGCCTCTTTGAGGGCTTAGACTGGTTGAGTAACACCCTCAAGGCAGGAGGTA
rJMSF014B10+ AAGGAGAGGGCCTCTTTGAGGGCTTAGACTGGTTGAGTAACACCCTCAAGGCAGGAGGTA
JMSF016F24- AAGGAGAGGGCCTCTTTGAGGGCTTAGACTGGTTGAGTAACACCCTCAAGGCAGGAGGTA
rJMSF021B21+ AAGGAGAGGGCCTCTTTGAGGGCTTAGACTGGTTGAGTAACACCCTCAAGGCAGGAGGTA
rJMSF016F24+ AAGGAGAGGGCCTCTTTGAGGGCTTAGACTGGTTGAGTAACACCCTCAAGGCAGGAGGTA
____________________________________________________________
consensus AAGGAGAGGGCCTCTTTGAGGGCTTAGACTGGTTGAGTAACACCCTCAAGGCAGGAGGTA
. : . : . : . : . : . :
rJMSF029F01+ GCTAAATTTTGTGTTTATGAGGGGGCCAATGCCTTGGAGACAGACACACAGCAAAGTCTT
rJMSF020B21+ GCTAAATTTTGTGTTTATGAGGGGGCCAATGCCTTGGAGACAGACACACAGCAAAGTCTT
rJMSF014B10+ GCTAAATTTTGTGTTTATGAGGGGGCCAATGCCTTGGAGACAGACACACAGCAAAGTCTT
JMSF016F24- GCTAAATTTTGTGTTTATGANGGGGCCNATGCCTT
rJMSF021B21+ GCTAAATTTTGTGTTTATGAGGGGGCCAATGCCTTGGAGACAGACACACAGCAAAGTCTT
rJMSF016F24+ GCTAAATTTTGTGTTTATGAGGGGGCCAATGCCTTGGAGACAGACACACAGCAAAGTCTT
____________________________________________________________
consensus GCTAAATTTTGTGTTTATGAGGGGGCCAATGCCTTGGAGACAGACACACAGCAAAGTCTT
. : . : . : . : . : . :
rJMSF029F01+ GGTACAAAACTACAAATTATGTTAGATATGCCGGTTTCTGATGTTATAGCTTCGGAAGTA
rJMSF020B21+ GGTACAAAACTACAAATTATGTTAGATATGCCGGTTTCTGATGTTATAGCTTCGGAAGTA
rJMSF014B10+ GGTACAAAACTACAAATTATGTTAGATATGCCGGTTTCTGATGTTATAGCTTCGGAAGTA
rJMSF021B21+ GGTACAAAACTACAAATTATGTTAGATATGCCGGTTTCTGATGTTATAGCTTCGGAAGTA
rJMSF016F24+ GGTACAAAACTACAAATTATGTTAGATATGCCGGTTTCTGATGTTATAGCTTCGGAAGTA
____________________________________________________________
consensus GGTACAAAACTACAAATTATGTTAGATATGCCGGTTTCTGATGTTATAGCTTCGGAAGTA
. : . : . : . : . : . :
rJMSF029F01+ AAGTGCGGGTATAATGATATTATCTGGCTTTTATTACAACACCCTTCTTCCTCTCTTCCC
rJMSF020B21+ AAGTGCGGGTATAATGATATTATCTGGCTTTTATTACAACACCCTTCTTCCTCTCTTCCC
rJMSF014B10+ AAGTGCGGGTATAATGATATTATCTGGCTTTTATTACAACACCCTTCTTCCTCTCTTCCC
rJMSF021B21+ AAGTGCGGGTATAATGATATTATCTGGCTTTTATTACAACACCCTTCTTCCTCTCTTCCC
rJMSF016F24+ AAGTGCGGGTATAATGATATTATCTGGCTTTTATTACAACACCCTTCTTCCTCTCTTCCC
____________________________________________________________
consensus AAGTGCGGGTATAATGATATTATCTGGCTTTTATTACAACACCCTTCTTCCTCTCTTCCC
. : . : . : . : . : . :
rJMSF029F01+ AAAATTTTTGCGACTT
rJMSF020B21+ AAAATTTTTGCGACTTTCTTCATTCTCATTCAAAGATGGTAGGCTTATGTCTTTGGTTCT
rJMSF014B10+ AAAATTTTTGCGACTTTCTTCATTCTCATTCAAAGATGGTAGGCTTATGTCTTTGGTTCT
rJMSF021B21+ AAAATTTTTGCGACTTTCTTCATTCTCATTCAAAGATGGTAGGCTTATGTCTTTGGTTCT
rJMSF016F24+ AAAATTTTTGCGACTTTCTTCATTCTCATTCAAAGATGGTAGGCTTATGTCTTTGGTTCT
____________________________________________________________
consensus AAAATTTTTGCGACTTTCTTCATTCTCATTCAAAGATGGTAGGCTTATGTCTTTGGTTCT
. : . : . : . : . : . :
rJMSF020B21+ TCTATACATTTCTGGTGGAGATTCCATGTGCT
rJMSF014B10+ TCTATACATTTCTGGTGGAGATTCCATGTGCT
rJMSF021B21+ TCTATACATTTCTGGTGGAGATTCCATGTGCT
rJMSF016F24+ TCTATACATTTCTGGTGGAGATTCCATGTGCTGATCTTCTGGGAGTTTAAAATGAAACAA
____________________________________________________________
consensus TCTATACATTTCTGGTGGAGATTCCATGTGCTGATCTTCTGGGAGTTTAAAATGAAACAA
. : . : . : . : . : . :
rJMSF016F24+ TATATTTTTCTTGCACATAGAAAATGTGATTAGTTTTCTTGACTTCTGTTAGAACAAATT
____________________________________________________________
consensus TATATTTTTCTTGCACATAGAAAATGTGATTAGTTTTCTTGACTTCTGTTAGAACAAATT