Contig 002794:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN032M18Sequence635002794 (7)ref|XP_004250094.1|2e-89PREDICTED: zinc finger CCCH domain-containing protein ZFN-like [Solanum lycoper
JMSF012J20Sequence357013420 (4)708002794 (7)emb|CBI17647.3|7e-58unnamed protein product [Vitis vinifera]
JMSF030O05Sequence697013420 (4)ref|XP_009793876.1|3e-50PREDICTED: zinc finger CCCH domain-containing protein ZFN-like [Nicotiana sylve728002794 (7)emb|CBI17647.3|2e-63unnamed protein product [Vitis vinifera]
JMSF038H07Sequence706013420 (4)ref|XP_009611380.1|1e-101PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4 [Nico905002794 (7)ref|XP_009611380.1|5e-95PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4 [Nico
JMSF042A15Sequence760013420 (4)ref|XP_009611380.1|2e-110PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4 [Nico653002794 (7)emb|CBI17647.3|2e-50unnamed protein product [Vitis vinifera]
JMSF047B17Sequence676008063 (4)gb|EYU39465.1|1e-29hypothetical protein MIMGU_mgv1a011231mg [Erythranthe guttata]738002794 (7)emb|CBI17647.3|2e-66unnamed protein product [Vitis vinifera]
JMSF047C12Sequence726017944ref|XP_009611378.1|2e-69PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2 [Nico705002794 (7)emb|CBI17647.3|3e-67unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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rJMSF038H07+                                                  CTCCTGGTCAGCTATCATAT
                      ____________________________________________________________
consensus                                                     CTCCTGGTCAGCTATCATAT
 
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rJMSF038H07+          CCCTTGTCAAGAGCTTCTTTTATTACCAATCCACGTTGGCAAGGTCCTTCAAGTTACACA
                      ____________________________________________________________
consensus             CCCTTGTCAAGAGCTTCTTTTATTACCAATCCACGTTGGCAAGGTCCTTCAAGTTACACA
 
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rJMSF038H07+          CCCCTGATTGTTCCTCAAGGGGTAGTATCAGTTCCAGGATTTGCATACAGTGGACAACTT
                      ____________________________________________________________
consensus             CCCCTGATTGTTCCTCAAGGGGTAGTATCAGTTCCAGGATTTGCATACAGTGGACAACTT
 
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rJMSF030O05+                                                    AATAGTCAGGCTTATGGA
rJMSF038H07+          GGTTCAGTTTCATCCCCTGAGAGCCAACAGCTGACAGTAGGAAATAGTCAGGCTTATGGA
                      ____________________________________________________________
consensus             GGTTCAGTTTCATCCCCTGAGAGCCAACAGCTGACAGTAGGAAATAGTCAGGCTTATGGA
 
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rJMSF030O05+          TTGTCTCGTTCCAGTGAGGTGGCAAACGTGGGATCTCAAGGGATGAATCCTTCTTATCGT
rJMSF042A15+                                                               TTATCGT
rJMSF038H07+          TTGTCTCGTTCCAGTGAGGTGGCAAACGTGGGATCTCAAGGGATGAATCCTTCTTATCGT
rJMSF012J20+                     CAGTGAGGTGGCAAACGTGGGATCTCAAGGGATGAATCCTTCTTATCGT
                      ____________________________________________________________
consensus             TTGTCTCGTTCCAGTGAGGTGGCAAACGTGGGATCTCAAGGGATGAATCCTTCTTATCGT
 
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rJMSF030O05+          GCTGGTACATTACCTAT-GGGGTATTATGCATTGCAGAGAGAGAACGTCTTCCCTGAACG
rJMSF042A15+          GCTGGTACATTACCTATGGGGGTATTATGCATTGCAGAGAGAGAACGTCTTCCCTGAACG
rJMSF047B17+                                             AGAGAGAGAACGTCTTCCCTGAACG
rJMSF047C12+                                             AGAGAGAGAACGTCTTCCCTGAACG
JMFN032M18-                                              AGAGAGAGAATGTCTTCCCTGAACG
rJMSF038H07+          GCTGGTACATTACCTAT-GGGGTATTATGCATTGCAGAGAGAGAACGTCTTCCCTGAACG
rJMSF012J20+          GCTGGTACATTACCTAT-GGGGTATTATGCATTGCAGAGAGAGAACGTCTTCCCTGAACG
                      ____________________________________________________________
consensus             GCTGGTACATTACCTAT-GGGGTATTATGCATTGCAGAGAGAGAACGTCTTCCCTGAACG
 
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rJMSF030O05+          ACCAGGTCAGCCAGAGTGCCAATTCTACATGAAGACTGGGGATTGCAAGTTTGGTGCTGT
rJMSF042A15+          ACCAGGTCAGCCAGAATGCCAATTCTACATGAAGACTGGGGATTGCAAGTTTGGTGCTGT
rJMSF047B17+          ACCAGGTCAGCCAGAATGCCAATTCTACATGAAGACTGGGGATTGCAAGTTTGGTGCTGT
rJMSF047C12+          ACCAGGTCAGCCAGAATGCCAATTCTACATGAAGACTGGGGATTGCAAGTTTGGTGCTGT
JMFN032M18-           GCCTGGCCAACCAGAATGCCAGTTCTACATGAAGACTGGAGACTGCAAGTTTGGTTCAGT
rJMSF038H07+          ACCAGGTCAGCCAGAATGCCAATTCTACATGAAGACTGGGGATTGCAAGTTTGGTGCTGT
rJMSF012J20+          ACCAGGTCAGCCAGAATGCCAATTCTACATGAAGACTGGGGATTGCAAGTTTGGTGCTGT
                      ____________________________________________________________
consensus             ACCAGGTCAGCCAGAATGCCAATTCTACATGAAGACTGGGGATTGCAAGTTTGGTGCTGT
 
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rJMSF030O05+          TTGTAAATTCCATCATCCGAGGGAAAGATTGATTCCTCCTCCTGATTCTTTGTTGAGTCC
rJMSF042A15+          TTGTAAATTCCATCATCCGAGGGAAAGATTGATTCCTCCTCCTGATTCTTTGTTGAGTCC
rJMSF047B17+          TTGTAAATTCCATCATCCGAGGGAAAGATTGATTCCTCCTCCTGATTCTTTGTTGAGTCC
rJMSF047C12+          TTGTAAATTCCATCATCCGAGGGAAAGATTGATTCCTCCTCCTGATTCTTTGTTGAGTCC
JMFN032M18-           TTGTAGGTTCCATCATCCGAGGGAAAGACTGATTCCTCCTCCTGATTGTATGCTGAGTCC
rJMSF038H07+          TTGTAAATTCCATCATCCGAGGGAAAGATTGATTCCTCCTCCTGATTCTTTGTTGAGTCC
rJMSF012J20+          TTGTAAATTCCATTATCCGAGGGAAAGATTGATTCCTCCTCCTGATTCTTTGTTGAGTCC
                      ____________________________________________________________
consensus             TTGTAAATTCCATCATCCGAGGGAAAGATTGATTCCTCCTCCTGATTCTTTGTTGAGTCC
 
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rJMSF030O05+          AATTGGACTTCCTCTACGCCCAGGAGAACCATTATGTGCTTTTTATTCCCGGTATGGGAT
rJMSF042A15+          AATTGGACTTCCTCTACGCCCAGGAGAACCATTATGTGCTTTTTATTCCCGGTATGGGAT
rJMSF047B17+          AATTGGACTTCCTCTACGCCCAGGAGAACCATTATGTGCTTTTTATTCCCGGTATGGGAT
rJMSF047C12+          AATTGGACTTCCTCTACGCCCAGGAGAACCATTATGTGCTTTTTATTCCCGGTATGGGAT
JMFN032M18-           TATTGGGCTTCCCCTACGCCCAGGAGAACCAATTTGTATTTTCTACTCCCGATATGGGAT
rJMSF038H07+          AATTGGACTTCCTCTACGCCCAGGAGAACCATTATGTGCTTTTTATTCCCGGTATGGGAT
rJMSF012J20+          AATTGGACTTCCTCTACGCCCAGGAGAACCATTATGTGCTTTTTATTCCCGGTATGGGAT
                      ____________________________________________________________
consensus             AATTGGACTTCCTCTACGCCCAGGAGAACCATTATGTGCTTTTTATTCCCGGTATGGGAT
 
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rJMSF030O05+          ATGCAAGTTTGGTCCAAGTTGCAAGTTTGATCACCCAATGGGAGTTTTCACCTACAATAT
rJMSF042A15+          ATGCAAGTTTGGTCCAAGTTGCAAGTTTGATCACCCAATGGGAGTTTTCACCTACAATAT
rJMSF047B17+          ATGCAAGTTTGGTCCAAGTTGCAAGTTTGATCACCCAATGGGAGTTTTCACCTACAATAT
rJMSF047C12+          ATGCAAGTTTGGTCCAAGTTGCAAGTTTGATCACCCAATGGGAGTTTTCACCTACAATAT
JMFN032M18-           CTGCAAGTTTGGTCCAAGTTGCAAGTTTGATCACCCAATGGGAGTTTTTGCTTACAGTCT
rJMSF038H07+          ATGCAAGTTTGGTCCAAGTTGCAAGTTTGATCACCCAATGGGAGTTTTCACCTACAATAT
rJMSF012J20+          ATGCAAGTTTGGTCCAAGTTGCAAGTTTGATCACCCAATGGGAGTTTTCACCTACAATAT
                      ____________________________________________________________
consensus             ATGCAAGTTTGGTCCAAGTTGCAAGTTTGATCACCCAATGGGAGTTTTCACCTACAATAT
 
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rJMSF030O05+          CTCACCATCATCTACAACTAACGCTCCTACTGTTCGGCATTTCTTGGGTTCTTCATCAGG
rJMSF042A15+          CTCACCATCATCTACAACTAACGCTCCTACTGTTCGGCATTTCTTGGGTTCTTCATCAGG
rJMSF047B17+          CTCACCATCATCTACAACTAACGCTCCTACTGTTCGGCATTTCTTGGGTTCTTCATCAGG
rJMSF047C12+          CTCACCATCATCTACAACTAACGCTCCTACTGTTCGGCATTTCTTGGGTTCTTCATCAGG
JMFN032M18-           CTCTCCATCACCTTCAACTGATGCTCCTGCTGGTCAGTTTTTGTTGGGTTCATCATCAGG
rJMSF038H07+          CTCACCATCATCTACAACTAACGCTCCTACTGTTCGGCATTTCTTGGGTTCTTCATCAGG
rJMSF012J20+          CTCACCATCATCTACAACTAACGCTCCTACTGTTCGGCATTTCTTGGGTTCTTCATCAGG
                      ____________________________________________________________
consensus             CTCACCATCATCTACAACTAACGCTCCTACTGTTCGGCATTTCTTGGGTTCTTCATCAGG
 
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rJMSF030O05+          AACTGGTACTTTGACTTTGTCTTCAGAAGGTGCTTGTTGAGGCAAGTTCCACGGAGCCCA
rJMSF042A15+          AACTGGTACTTTGACTTTGTCTTCAGAAGGTGCTTGTTGAGGCAAGTTCCACGGAGCCCA
rJMSF047B17+          AACTGGTACTTTGACTTTGTCTTCAGAAGGTGCTTGTTGAGGCAAGTTCCACGGAGCCCA
rJMSF047C12+          AACTGGTACTTTGACTTTGTCTTCAGAAGGTGCTTGTTGAGGCAAGTTCCACGGAGCCCA
JMFN032M18-           AACTGGTGCTTTGACTTTGTCTTCAGAAGG                              
rJMSF038H07+          AACTGGTACTTTGACTTTGTCTTCAGAAGGTGCTTGTTGAGGCAAGTTCCACGGAGCCCA
rJMSF012J20+          AACTGGTACTTTGACTTTGTCTTCAGAAGGTGCTTGTTGAGGCAAGTTCCACGGAGCCCA
                      ____________________________________________________________
consensus             AACTGGTACTTTGACTTTGTCTTCAGAAGGTGCTTGTTGAGGCAAGTTCCACGGAGCCCA
 
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rJMSF030O05+          GGTGACTGTCATTCTCAAAAGTGAGACAGATGCCATCTGGTGGTAATAACATTGACACAG
rJMSF042A15+          GGTGACTGTCATTCTCAAAAGTGAGACAGATGCCATCTGGTGGTAATAACATTGACACAG
rJMSF047B17+          GGTGACTGTCATTCTCAAAAGTGAGACAGATGCCATCTGGTGGTAATAACATTGACACAG
rJMSF047C12+          GGTGACTGTCATTCTCAAAAGTGAGACAGATGCCATCTGGTGGTAATAACATTGACACAG
rJMSF038H07+          GGTGACTGTCATTCTCAAAAGTGAGACAGATGCCATCTGGTGGTAATAACATTGACACAG
rJMSF012J20+          GGTGACTGTCATTCTCAAAAGTGAGACAGATGCCATCTGGTGGTAATAACATTGACACAG
                      ____________________________________________________________
consensus             GGTGACTGTCATTCTCAAAAGTGAGACAGATGCCATCTGGTGGTAATAACATTGACACAG
 
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rJMSF030O05+          AAGGATGATCTTCCTCTTGGTTACAGCCAGTATCAGTGTCTTCGAACTCCTTTAGAATTA
rJMSF042A15+          AAGGATGATCTTCCTCTTGGTTACAGCCAGTATCAGTGTCTTCGAACTCCTTTAGAATTA
rJMSF047B17+          AAGGATGATCTTCCTCTTGGTTACAGCCAGTATCAGTGTCTTCGAACTCCTTTAGAATTA
rJMSF047C12+          AAGGATGATCTTCCTCTTGGTTACAGCCAGTATCAGTGTCTTCGAACTCCTTTAGAATTA
rJMSF038H07+          AAGGATGATCTTCCTCTTGGTTACAGCCAGTATCAGTGTCTTCGAACTCCTTTAGAATTA
rJMSF012J20+          AAGGATGATCTTCCTCTTGGTTACAGCCAGTATCAGTGTCTTCGAACTCCTTTAGAATTA
                      ____________________________________________________________
consensus             AAGGATGATCTTCCTCTTGGTTACAGCCAGTATCAGTGTCTTCGAACTCCTTTAGAATTA
 
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rJMSF030O05+          ATAACAGTTGCCTGTAAATTCATTTCCATTGTTGGAGATGTACATAATTCTATTAAAGCC
rJMSF042A15+          ATAACAGTTGCCTGTAAATTCATTTCCATTGTTGGAGATGTACATAATTCTATTAAAGCC
rJMSF047B17+          ATAACAGTTGCCTGTAAATTCATTTCCATTGTTGGAGATGTACATAATTCTATTAAAGCC
rJMSF047C12+          ATAACAGTTGCCTGTAAATTCATTTCCATTGTTGGAGATGTACATAATTCTAT       
rJMSF038H07+          ATAACAGTTGCCTGTAAATTCATTTCCATTGTTGGAGATGTACATAATTCTATTAAAGCC
rJMSF012J20+          ATAACAGTTGCCTGTAAATTCATTTCCATTGTTGGAGATGTACATAATTCTATTAAAGCC
                      ____________________________________________________________
consensus             ATAACAGTTGCCTGTAAATTCATTTCCATTGTTGGAGATGTACATAATTCTATTAAAGCC
 
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rJMSF030O05+          ATTCTGTGCTGATAATGCATTCACTTGACAATGTTGATG                     
rJMSF042A15+          ATTCTGTGCTGATAATGCATTCACTTGACAATGTTGAT                      
rJMSF047B17+          ATTCTGTGCTGATAATGCATTCACTTGACAATGTTGATG                     
rJMSF038H07+          ATTCTGTGCTGATAATGCATTCACTTGACAATGTTGATG                     
rJMSF012J20+          ATTCTGTGCTGATAATGCATTCACTTGACAATGTTGATGTAGAGCTTCACTTTGGTGCCC
                      ____________________________________________________________
consensus             ATTCTGTGCTGATAATGCATTCACTTGACAATGTTGATGTAGAGCTTCACTTTGGTGCCC