Contig 002792:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012G05Sequence541002792 (2)emb|CDP18352.1|3e-43unnamed protein product [Coffea canephora]720002792 (2)ref|XP_002284683.1|1e-74PREDICTED: pre-rRNA-processing protein ESF2 [Vitis vinifera] ref|XP_010663812.1|

Alignment

This contig is upended


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JMSF012G05-                                             GGTGATAGCCGTCGGAGTAGGAGAGG
                      ____________________________________________________________
consensus                                               GGTGATAGCCGTCGGAGTAGGAGAGG
 
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JMSF012G05-           AGCTTTCCCCTTAACGATACCTCTTCGCCCGTTCGCCGGAACTCTGCAGTTTAGACAGCG
                      ____________________________________________________________
consensus             AGCTTTCCCCTTAACGATACCTCTTCGCCCGTTCGCCGGAACTCTGCAGTTTAGACAGCG
 
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JMSF012G05-           GCGTAGCTGCTGTGGACGTTCTTTTATTTGACGCAGGTTTTTCCCTCTCGATTGTCAGCT
                      ____________________________________________________________
consensus             GCGTAGCTGCTGTGGACGTTCTTTTATTTGACGCAGGTTTTTCCCTCTCGATTGTCAGCT
 
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JMSF012G05-           CCGCTGAGCTTTTACGGTTGAATATTGTGCTAAGATTCAAATACCGCTGTTGAAGTTAAG
                      ____________________________________________________________
consensus             CCGCTGAGCTTTTACGGTTGAATATTGTGCTAAGATTCAAATACCGCTGTTGAAGTTAAG
 
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JMSF012G05-           ATGACTGAGGAAGATTTGGAGGTAAAAGATTCTGCTGGTGAAGATGGGATAGAAAATGAT
                      ____________________________________________________________
consensus             ATGACTGAGGAAGATTTGGAGGTAAAAGATTCTGCTGGTGAAGATGGGATAGAAAATGAT
 
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JMSF012G05-           GTTAAGGTTGAAAATCGAAAAAATAAAAGGAAGCAACGGTTAATGGATGAAGCTGCAAAG
                      ____________________________________________________________
consensus             GTTAAGGTTGAAAATCGAAAAAATAAAAGGAAGCAACGGTTAATGGATGAAGCTGCAAAG
 
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JMSF012G05-           GCTGGAAAGCGTGGGATTTGTTACTTGAGCCGTGTACCTCCACACATGAATCCTGTGAAG
                      ____________________________________________________________
consensus             GCTGGAAAGCGTGGGATTTGTTACTTGAGCCGTGTACCTCCACACATGAATCCTGTGAAG
 
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JMSF012G05-           CTCCGTCAACTTCTTTCTCAGTATGGAGAAATTCAGAGAATTTATCTTGTACCTGAAGAT
rJMSF012G05+                                                                     T
                      ____________________________________________________________
consensus             CTCCGTCAACTTCTTTCTCAGTATGGAGAAATTCAGAGAATTTATCTTGTACCTGAAGAT
 
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JMSF012G05-           CCTGCGGCACAAATGAACCGTAAACGGGCAGGTGGTTTTCGTGGACAAGAATTTTCAGAA
rJMSF012G05+          CCTGCGGCACAAATGAACCGTAAACGGGCAGGTGGTTTTCGTGGACAAGAA-TTTCAGAA
                      ____________________________________________________________
consensus             CCTGCGGCACAAATGAACCGTAAACGGGCAGGTGGTTTTCGTGGACAAGAATTTTCAGAA
 
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JMSF012G05-           GGGTGGGTTGAGTTCGCGAAAAAGAGCATTGCTAA                         
rJMSF012G05+          GGGTGGGTTGAGTTCGCGAAAAAGAGCATTGCTAAAAGGGTTGCTAAGATGTTAAACGGT
                      ____________________________________________________________
consensus             GGGTGGGTTGAGTTCGCGAAAAAGAGCATTGCTAAAAGGGTTGCTAAGATGTTAAACGGT
 
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rJMSF012G05+          CAACAAATAGGCGGCAGGAAAAGGTCCTCATTCTATTATGACATTTGGAATATCAAGTAC
                      ____________________________________________________________
consensus             CAACAAATAGGCGGCAGGAAAAGGTCCTCATTCTATTATGACATTTGGAATATCAAGTAC
 
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rJMSF012G05+          TTGAGTAAATTCAAGTGGGATGATCTTACTGAAGAGATTGCATACAATAATGCTGTTCGG
                      ____________________________________________________________
consensus             TTGAGTAAATTCAAGTGGGATGATCTTACTGAAGAGATTGCATACAATAATGCTGTTCGG
 
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rJMSF012G05+          GAACAGAAGTTAGCACTGGAAGTTTCAGTTGCTAAGAAGGAAAGAGATTTCTTCCTCACA
                      ____________________________________________________________
consensus             GAACAGAAGTTAGCACTGGAAGTTTCAGTTGCTAAGAAGGAAAGAGATTTCTTCCTCACA
 
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rJMSF012G05+          CAAGTTGATAAATCACGTGCCTTAAGTGCTATTGAGGAACGGTTAAAGAAGAAGCAGAAA
                      ____________________________________________________________
consensus             CAAGTTGATAAATCACGTGCCTTAAGTGCTATTGAGGAACGGTTAAAGAAGAAGCAGAAA
 
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rJMSF012G05+          GTTCAACAAGAGTCGATTGAAACTTCTTCTGTGGATAACCAGTTTATGCCAAAGTTGATT
                      ____________________________________________________________
consensus             GTTCAACAAGAGTCGATTGAAACTTCTTCTGTGGATAACCAGTTTATGCCAAAGTTGATT
 
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rJMSF012G05+          AGGCAAGTTCCGCAGAAGAAGGCAGTGGCAGCAGGAACTGGAGAAAACAAAACAAAACTG
                      ____________________________________________________________
consensus             AGGCAAGTTCCGCAGAAGAAGGCAGTGGCAGCAGGAACTGGAGAAAACAAAACAAAACTG
 
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rJMSF012G05+          TCTAAGGATACACTAGCTGCAGTGTTTGGTGGCTCGTCATGATTGCATCATTGGAAGGTG
                      ____________________________________________________________
consensus             TCTAAGGATACACTAGCTGCAGTGTTTGGTGGCTCGTCATGATTGCATCATTGGAAGGTG
 
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rJMSF012G05+          GGCTTACCGGTTCATGTGCAGCTTTCTATTTTTTTGAGGTTGTATTTTCTTTGTGCTTCC
                      ____________________________________________________________
consensus             GGCTTACCGGTTCATGTGCAGCTTTCTATTTTTTTGAGGTTGTATTTTCTTTGTGCTTCC
 
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rJMSF012G05+          TATCGAGCACCACCATGTAACATGACTCTACTTCTAAGATAGGTAGGATTGTAGAGGTGA
                      ____________________________________________________________
consensus             TATCGAGCACCACCATGTAACATGACTCTACTTCTAAGATAGGTAGGATTGTAGAGGTGA
 
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rJMSF012G05+          AAGTTCTCAGGGATTAATTATCGCACTTTCTCTTTCTCGATGATGAGGTTTTCAATTTTC
                      ____________________________________________________________
consensus             AAGTTCTCAGGGATTAATTATCGCACTTTCTCTTTCTCGATGATGAGGTTTTCAATTTTC