Contig 002766:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008A23Sequence272007573 (10)ref|XP_009763882.1|6e-16PREDICTED: calmodulin-binding transcription activator 3-like isoform X1 [Nicoti738002766 (2)ref|XP_010645223.1|4e-71PREDICTED: calmodulin-binding transcription activator 3 [Vitis vinifera]
JMSF025G02Sequence657007573 (10)ref|XP_009763883.1|3e-104PREDICTED: calmodulin-binding transcription activator 3-like isoform X2 [Nicoti677002766 (2)ref|XP_010645223.1|1e-45PREDICTED: calmodulin-binding transcription activator 3 [Vitis vinifera]

Alignment

This contig is upended


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rJMSF008A23+                                                    TCGACAGCAAATTATTAA
                      ____________________________________________________________
consensus                                                       TCGACAGCAAATTATTAA
 
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rJMSF025G02+                                               AACTATAGAAAGATAACCTGGTC
rJMSF008A23+          AATTCAGGCACATGTAAGAGGACACCAGGTGAGGAAGAACTATAGAAAGATAACCTGGTC
                      ____________________________________________________________
consensus             AATTCAGGCACATGTAAGAGGACACCAGGTGAGGAAGAACTATAGAAAGATAACCTGGTC
 
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rJMSF025G02+          AGTTGGAATCCTGGAGAAGGTAATTTTGCGATGNAGACGAAAAGGAAGTGGCTTGCGTGG
rJMSF008A23+          AGTTGGAATCCTGGAGAAGGTAATTTTGCGATGGAGACGAAAAGGAAGTGGCTTGCGTGG
                      ____________________________________________________________
consensus             AGTTGGAATCCTGGAGAAGGTAATTTTGCGATGGAGACGAAAAGGAAGTGGCTTGCGTGG
 
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rJMSF025G02+          GTTTAAGTCAGAAGCACTTGCTGAAGGGCACAGCATGCAAGATCAACCTAAGCAAGAGGA
rJMSF008A23+          GTTTAAGTCAGAAGCACTTGCTGAAGGGCACAGCATGCAAGATCAACCTAAGCAAGAGGA
                      ____________________________________________________________
consensus             GTTTAAGTCAGAAGCACTTGCTGAAGGGCACAGCATGCAAGATCAACCTAAGCAAGAGGA
 
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rJMSF025G02+          TGACTATGATTTTCTTAAAGAAGGGAGAAAACAAACCGAGGAGAGGCTGCAGACGGCTCT
rJMSF008A23+          TGACTATGATTTTCTTAAAGAAGGGAGAAAACAAACCGAGGAGAGGCTGCAGACGGCTCT
                      ____________________________________________________________
consensus             TGACTATGATTTTCTTAAAGAAGGGAGAAAACAAACCGAGGAGAGGCTGCAGACGGCTCT
 
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rJMSF025G02+          TGCCAGGGTGCAATCCATGGTTCAATATCCCGAGGCTAGAGATCAATACCGAAGACTGCT
rJMSF008A23+          TGCCAGGGTGCAATCCATGGTTCAATATCCCGAGGCTAGAGATCAATACCGAAGACTGCT
                      ____________________________________________________________
consensus             TGCCAGGGTGCAATCCATGGTTCAATATCCCGAGGCTAGAGATCAATACCGAAGACTGCT
 
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rJMSF025G02+          AAATGTTGTCTCTGAGATGCAGGAAACTAAGAATAAATATGACAGGGTCTTGAAACGTTC
rJMSF008A23+          AAATGTTGTCTCTGAGATGCAGGAAACTAAGAATAAATATGACAGGGTCTTGAAACGTTC
                      ____________________________________________________________
consensus             AAATGTTGTCTCTGAGATGCAGGAAACTAAGAATAAATATGACAGGGTCTTGAAACGTTC
 
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rJMSF025G02+          AGGCCGCACATATGAGTTTGATGAAGACCTGATTGAACTGGAAGCTTTCTTGAATGACGA
rJMSF008A23+          AGGCCGCACATATGAGTTTGATGAAGACCTGATTGAACTGGAAGCTTTCTTGAATGACGA
                      ____________________________________________________________
consensus             AGGCCGCACATATGAGTTTGATGAAGACCTGATTGAACTGGAAGCTTTCTTGAATGACGA
 
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rJMSF025G02+          CACATTCATGCCCACAGCATCTTGAATCATGTGCTATTAAAAACTTAATATAAGTCTGGT
rJMSF008A23+          CACATTCATGCCCACAGCATCTTGAATCATGTGCTATTAAAAACTTAATATAAGTCTGGT
                      ____________________________________________________________
consensus             CACATTCATGCCCACAGCATCTTGAATCATGTGCTATTAAAAACTTAATATAAGTCTGGT
 
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rJMSF025G02+          TTAGTGCATAACTTAATTAACTAGTGAGGGCTTATACATAGGTTACCTGACAAATGCGTA
rJMSF008A23+          TTAGTGCATAACTTAATTAACTAGTGAGGGCTTATACATAGGTTACCTGACAAATGCGTA
                      ____________________________________________________________
consensus             TTAGTGCATAACTTAATTAACTAGTGAGGGCTTATACATAGGTTACCTGACAAATGCGTA
 
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rJMSF025G02+          GATGTGCTCTAACTAGGTATATTAATTTGGCTGGATTGATATTATACAGTCATTGCAATG
rJMSF008A23+          GATGTGCTCTAACTAGGTATATTAATTTGGCTGGATTGATATTATACAGTCATTGCAATG
                      ____________________________________________________________
consensus             GATGTGCTCTAACTAGGTATATTAATTTGGCTGGATTGATATTATACAGTCATTGCAATG
 
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rJMSF025G02+          TATCAGACATTTTCTAGATTTACTTTATCAACTAGGCTAATGAAACTGTACTACAAAATC
rJMSF008A23+          TATCAGACATTTTCTAGATTTACTTTATCAACTAGGCTAATGAAACTGTACTACAAAATC
                      ____________________________________________________________
consensus             TATCAGACATTTTCTAGATTTACTTTATCAACTAGGCTAATGAAACTGTACTACAAAATC
 
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rJMSF025G02+          AATGTATTTATGAATTAGCCAATGTACAAAAAATAATGTATTCATTT             
rJMSF008A23+          AATGTATTTATGAATTAGCCAATGTACAAAAAATAATGTATTCATTTTGCATGCTAAATA
                      ____________________________________________________________
consensus             AATGTATTTATGAATTAGCCAATGTACAAAAAATAATGTATTCATTTTGCATGCTAAATA