Contig 002755:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF018C02+                                       TCTGGTGAGAACCTTGATACTATGTGTAATT
                      ____________________________________________________________
consensus                                          TCTGGTGAGAACCTTGATACTATGTGTAATT
 
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rJMSF018C02+          ATCATCATCTTGGTGGCCAGACAATGTTAGTAGATGTGGAGTTGAAAGTCCAAGCAAGCT
                      ____________________________________________________________
consensus             ATCATCATCTTGGTGGCCAGACAATGTTAGTAGATGTGGAGTTGAAAGTCCAAGCAAGCT
 
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rJMSF018C02+          ACCATAGGCAGCGAGTGCCTATGATTTCATTAATGAGTAAGATAAATGGACAGGCAATAA
                      ____________________________________________________________
consensus             ACCATAGGCAGCGAGTGCCTATGATTTCATTAATGAGTAAGATAAATGGACAGGCAATAA
 
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rJMSF018C02+          TAGGGCATCCCATCCAAATTGAAGCTCTAGAAAATGGTGCCTCACAAAACTTCTTGGGTG
                      ____________________________________________________________
consensus             TAGGGCATCCCATCCAAATTGAAGCTCTAGAAAATGGTGCCTCACAAAACTTCTTGGGTG
 
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rJMSF018C02+          CACTTGATGTTTTTCCAGAAACATTGAGTAATGACACCTCCCTCCAACCTGTGTGGAGGA
                      ____________________________________________________________
consensus             CACTTGATGTTTTTCCAGAAACATTGAGTAATGACACCTCCCTCCAACCTGTGTGGAGGA
 
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rJMSF018C02+          CTGCTCGAAGGACAGCTGGTGTTCGAGTTCCACGACCAAATATATCATCAGGATTGGATG
rJMSF009O15+                                          CGACCAAATATNTCATCAGGATTGGATG
                      ____________________________________________________________
consensus             CTGCTCGAAGGACAGCTGGTGTTCGAGTTCCACGACCAAATATATCATCAGGATTGGATG
 
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rJMSF018C02+          GAACTGAAAGTAGCAAGCATCCCCTAGCTGCTGAGGGAGACCGAAATGTTCGCAGAGACA
rJMSF009O15+          GAACTGAAAGTAGCAAGCATCCCCTAGCTGCTGAGGGAGACCGAAATGTTCACAGAGACA
rJMSF003I12+                                         TGAGGGAGACCGAAATGTTCGCAGAGACA
                      ____________________________________________________________
consensus             GAACTGAAAGTAGCAAGCATCCCCTAGCTGCTGAGGGAGACCGAAATGTTCGCAGAGACA
 
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rJMSF018C02+          GTTCAGATGGTTTTGGTCAAAAGCCAAGCATGATGAGGAAGAACACATCCCGCCCTCCAG
rJMSF027A24+                                                                 TCCAG
rJMSF009O15+          GTTCAGATGGTTTTGGTCAAAAGCCAAGCATGATGAGGAAGAACACATCCCGCCCTCCAG
rJMSF003I12+          GTTCAGATGGTTTTGGTCAAAAGCCAAGCATGATGAGGAAGAACACATCCCGCCCTCCAG
                      ____________________________________________________________
consensus             GTTCAGATGGTTTTGGTCAAAAGCCAAGCATGATGAGGAAGAACACATCCCGCCCTCCAG
 
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rJMSF018C02+          TGGTGAAGACTTTCTCTAGAAAGACACCAAAGAGAATCAGCTTGTCTTCTAATCAGAAGA
rJMSF027A24+          TGGTGAAGNCTTTCTCTAGAAAGACACCAAAGAGAATCAGCTTGTCTTCTAATCAGAAGA
rJMSF009O15+          TGGTGAAGACTTTCTCTAGAAAGACACCAAAGAGAATCAGCTTGTCTTCTAATCAGAAGA
rJMSF003I12+          TGGTGAAGACTTTCTCTAGAAAGACACCAAAGAGAATCAGCTTGTCTTCTAATCAGAAGA
                      ____________________________________________________________
consensus             TGGTGAAGACTTTCTCTAGAAAGACACCAAAGAGAATCAGCTTGTCTTCTAATCAGAAGA
 
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rJMSF018C02+          TAAGAACTCTTTCATCAATTTCATCACAACAGTAGCAGAGCGGTGATCTGAAACGTAGCT
rJMSF027A24+          TAAGAACTCTTTCNTCAATTTCATCACAACAGAAGCAGAGCGGTGATNTGAAACGTAGCT
rJMSF009O15+          TAAGAACTCTTTCATCAATTTCATCACAACAGAAGCAGAGCGGTGATCTGAAACGTAGCT
rJMSF003I12+          TAAGAACTCTTTCATCAATTTCATCACAACAGAAGCAGAGCGGTGATCTGAAACGTAGCT
                      ____________________________________________________________
consensus             TAAGAACTCTTTCATCAATTTCATCACAACAGAAGCAGAGCGGTGATCTGAAACGTAGCT
 
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rJMSF018C02+          CCAACATATTTCAAGTGGATGGGATAATGAAACAAGATACTGTGCCCACAGTCATAGCTT
rJMSF027A24+          CCAACATNTTTCAAGTGGATGGGATAATGAAACAAGATACTGTGCCCACAGTCATAGCTT
rJMSF009O15+          CCAACATATTTCAAGTGGATGGGATAATGAAACAAGATACTGTGCCCACAGTCATAGCTT
rJMSF003I12+          CCAACATATTTCAAGTGGATGGGATAATGAAACAAGATACTGTGCCCACAGTCATAGCTT
                      ____________________________________________________________
consensus             CCAACATATTTCAAGTGGATGGGATAATGAAACAAGATACTGTGCCCACAGTCATAGCTT
 
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rJMSF018C02+          GTATCCCAGTGAAGCTAGTATTCAGTAGGTTAAACGAGGAGTTGGTGGGTCGGCCAAAAT
rJMSF027A24+          GTNTCCCAGTGAAGCTAGTATTCAGTAGGTTNAACGAGGAGTTGGTGGGTCGGCCAAAAT
rJMSF009O15+          GTATCCCAGTGAAGCTAGTATTCAGTAGGTTAAACGAGGAGTTGGTGGGTCGGCCAAAAT
rJMSF003I12+          GTATCCCAGTGAAGCTAGTATTCAGTAGGTTAAACGAGGAGTTGGTGGGTCGGCCAAAAT
                      ____________________________________________________________
consensus             GTATCCCAGTGAAGCTAGTATTCAGTAGGTTAAACGAGGAGTTGGTGGGTCGGCCAAAAT
 
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rJMSF018C02+          AAGGACCATTGGTGCTGAAACAAGGC                                  
rJMSF027A24+          NAGGNCCATTGGTGNTGAAACNAGGCNATNAGATATAATNGTAAATTGTAACTTGTAATC
rJMSF009O15+          AAGGACCATTGGTGCTGAAACAAGGCAATAAGATATAATTGTAAATTGTAACTTGTAATC
rJMSF003I12+          AAGGACCATTGGTGCTGAAACAAGGCAATAAGATATAATTGTAAATTGTAACTTGTAATC
                      ____________________________________________________________
consensus             AAGGACCATTGGTGCTGAAACAAGGCAATAAGATATAATTGTAAATTGTAACTTGTAATC
 
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rJMSF027A24+          AATGAGCAATAATCTTTATAACNGATAATGCACCACCCATCTATTNCTAGGGTCTTTTNT
rJMSF009O15+          AATGAGCAATAATCTTTATAACTGATAATGCACCACCCATCTATTGCTAGGGTCTTTT-T
rJMSF003I12+          AATGAGCAATAATCTTTATAACTGATAATGCACCACCCATCTATTGCTAGGGTCTTTT-T
                      ____________________________________________________________
consensus             AATGAGCAATAATCTTTATAACTGATAATGCACCACCCATCTATTGCTAGGGTCTTTT-T
 
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rJMSF027A24+          TTTAATCCAGGCAGTGTGGTCCAGAATCTGTGTTATCCCTTCTGAACAGCATGAAAGATG
rJMSF009O15+          TTTAATCCAGGCAGTGTGGTCCAGAATCTGTGTTATCCCTTCTGAACAGCATGAAAGATG
rJMSF003I12+          TTTAATCCAGGCAGTGTGGTCCAGAATCTGTGTTATCCCTTCTGAACAGCATGAAAGATG
                      ____________________________________________________________
consensus             TTTAATCCAGGCAGTGTGGTCCAGAATCTGTGTTATCCCTTCTGAACAGCATGAAAGATG
 
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rJMSF027A24+          GCAGGTTGCTAGGTCNGAAGAACATATACAGGNTCTTTGCATGATTGTACATTGGTTTAT
rJMSF009O15+          GCAGGTTGCTAGGTCTGAAGAACATATACAGGATCTTTGCATGATTGTACATTGGTTTAT
rJMSF003I12+          GCAGGTTGCTAGGTCTGAAGAACATATACAGGATCTTTGCATGATTGTACATTGGTTTAT
                      ____________________________________________________________
consensus             GCAGGTTGCTAGGTCTGAAGAACATATACAGGATCTTTGCATGATTGTACATTGGTTTAT
 
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rJMSF027A24+          AGTTTTGATGTTGCGTTAGCACAAAAAAAAANGCATTCATGCNCAAAAGAGATATCAGTG
rJMSF009O15+          AGTTTTGATGTTGTGTTAGCACAAAAAAAAATGCATTTATGCACAAAAGAGATACCAGTG
rJMSF003I12+          AGTTTTGATGTTGTGTTAGCACAAAAAAAAATGCATTTATGCACAAAAGAGATA-CAGTG
                      ____________________________________________________________
consensus             AGTTTTGATGTTGTGTTAGCACAAAAAAAAATGCATTTATGCACAAAAGAGATATCAGTG
 
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rJMSF027A24+          TTTAAGATAATAGGATATGGATGTAAATNCTATNTCAGATCAATCC              
rJMSF009O15+          TTTAAGATAATAGGATATGGATGTAAATTCTATTTCAGATCAATCC              
rJMSF003I12+          TTTAAGATAATAGGATATGGATGTAAATTCTATTTCAGATCAATCCATTTGTAGACAGCT
                      ____________________________________________________________
consensus             TTTAAGATAATAGGATATGGATGTAAATTCTATTTCAGATCAATCCATTTGTAGACAGCT